PDB Short entry for 2E7K HEADER MEMBRANE PROTEIN 10-JAN-07 2E7K TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM HUMAN MAGUK P55 SUBFAMILY TITLE 2 MEMBER 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAGUK P55 SUBFAMILY MEMBER 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: PROTEIN MPP2, DISCS LARGE HOMOLOG 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MPP2, DLG2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050912-12; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, MAGUK P55 SUBFAMILY MEMBER 2, MPP2 PROTEIN, DISCS LARGE KEYWDS 2 HOMOLOG 2, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.R.QIN,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2E7K 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E7K 1 VERSN REVDAT 1 22-JAN-08 2E7K 0 JRNL AUTH X.R.QIN,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM HUMAN MAGUK P55 JRNL TITL 2 SUBFAMILY MEMBER 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA 4.3, CYANA 2.0.17 REMARK 3 AUTHORS : JEOL (DELTA), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E7K COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026324. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14MM 13C,15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9816, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 8 106.10 -170.34 REMARK 500 1 ARG A 13 42.02 -102.17 REMARK 500 1 ALA A 16 132.65 -32.63 REMARK 500 1 GLU A 18 124.81 -37.54 REMARK 500 1 ILE A 33 91.82 -58.95 REMARK 500 1 LEU A 47 -72.40 -66.29 REMARK 500 1 VAL A 50 128.83 -34.95 REMARK 500 1 ASN A 58 25.29 48.46 REMARK 500 1 ASN A 75 40.30 -108.85 REMARK 500 1 SER A 89 104.17 -38.40 REMARK 500 2 SER A 2 109.73 -46.64 REMARK 500 2 ARG A 13 53.52 -107.04 REMARK 500 2 LEU A 20 -65.99 -109.11 REMARK 500 2 GLU A 27 40.33 -107.67 REMARK 500 2 LEU A 37 162.20 -48.23 REMARK 500 2 ASN A 58 27.93 48.83 REMARK 500 2 SER A 64 -39.45 -36.04 REMARK 500 2 GLN A 70 -19.21 -49.51 REMARK 500 3 ARG A 8 105.74 -171.91 REMARK 500 3 ARG A 13 50.88 -102.81 REMARK 500 3 ALA A 16 128.61 -36.45 REMARK 500 3 GLU A 18 143.89 -35.38 REMARK 500 3 ILE A 33 102.18 -59.26 REMARK 500 3 LEU A 37 46.31 -79.10 REMARK 500 3 HIS A 38 36.32 34.83 REMARK 500 3 SER A 64 48.54 -91.35 REMARK 500 3 ALA A 76 106.57 -48.43 REMARK 500 3 SER A 89 -177.28 -66.06 REMARK 500 3 SER A 90 50.43 37.05 REMARK 500 4 LYS A 14 -174.97 -51.63 REMARK 500 4 ILE A 33 94.28 -61.76 REMARK 500 4 HIS A 38 47.09 -84.27 REMARK 500 4 GLN A 44 -63.84 -94.61 REMARK 500 4 LYS A 55 -58.83 -126.57 REMARK 500 4 ASN A 58 25.02 46.33 REMARK 500 5 SER A 5 108.40 -55.53 REMARK 500 5 ARG A 8 60.13 -118.78 REMARK 500 5 MET A 9 110.89 -35.39 REMARK 500 5 LYS A 14 176.06 -59.34 REMARK 500 5 ALA A 16 106.31 -46.44 REMARK 500 5 LEU A 20 -70.15 -93.90 REMARK 500 5 LEU A 37 156.56 -45.79 REMARK 500 6 ALA A 16 102.59 -58.34 REMARK 500 6 LEU A 37 106.22 -51.38 REMARK 500 6 MET A 41 -70.40 -67.89 REMARK 500 6 ASN A 58 29.63 46.78 REMARK 500 6 VAL A 62 72.27 -106.57 REMARK 500 6 SER A 64 -39.06 -38.90 REMARK 500 6 ASN A 75 34.67 -95.54 REMARK 500 6 SER A 86 -175.13 -54.91 REMARK 500 REMARK 500 THIS ENTRY HAS 150 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001131.1 RELATED DB: TARGETDB DBREF 2E7K A 8 85 UNP Q14168 MPP2_HUMAN 163 240 SEQADV 2E7K GLY A 1 UNP Q14168 EXPRESSION TAG SEQADV 2E7K SER A 2 UNP Q14168 EXPRESSION TAG SEQADV 2E7K SER A 3 UNP Q14168 EXPRESSION TAG SEQADV 2E7K GLY A 4 UNP Q14168 EXPRESSION TAG SEQADV 2E7K SER A 5 UNP Q14168 EXPRESSION TAG SEQADV 2E7K SER A 6 UNP Q14168 EXPRESSION TAG SEQADV 2E7K GLY A 7 UNP Q14168 EXPRESSION TAG SEQADV 2E7K SER A 86 UNP Q14168 EXPRESSION TAG SEQADV 2E7K GLY A 87 UNP Q14168 EXPRESSION TAG SEQADV 2E7K PRO A 88 UNP Q14168 EXPRESSION TAG SEQADV 2E7K SER A 89 UNP Q14168 EXPRESSION TAG SEQADV 2E7K SER A 90 UNP Q14168 EXPRESSION TAG SEQADV 2E7K GLY A 91 UNP Q14168 EXPRESSION TAG SEQRES 1 A 91 GLY SER SER GLY SER SER GLY ARG MET VAL GLY ILE ARG SEQRES 2 A 91 LYS THR ALA GLY GLU HIS LEU GLY VAL THR PHE ARG VAL SEQRES 3 A 91 GLU GLY GLY GLU LEU VAL ILE ALA ARG ILE LEU HIS GLY SEQRES 4 A 91 GLY MET VAL ALA GLN GLN GLY LEU LEU HIS VAL GLY ASP SEQRES 5 A 91 ILE ILE LYS GLU VAL ASN GLY GLN PRO VAL GLY SER ASP SEQRES 6 A 91 PRO ARG ALA LEU GLN GLU LEU LEU ARG ASN ALA SER GLY SEQRES 7 A 91 SER VAL ILE LEU LYS ILE LEU SER GLY PRO SER SER GLY HELIX 1 1 GLY A 40 GLY A 46 1 7 HELIX 2 2 ASP A 65 ASN A 75 1 11 SHEET 1 A 4 VAL A 22 VAL A 26 0 SHEET 2 A 4 LEU A 31 ILE A 36 -1 O ARG A 35 N THR A 23 SHEET 3 A 4 ILE A 53 VAL A 57 -1 O ILE A 54 N LEU A 31 SHEET 4 A 4 GLN A 60 PRO A 61 -1 O GLN A 60 N VAL A 57 SHEET 1 B 4 VAL A 22 VAL A 26 0 SHEET 2 B 4 LEU A 31 ILE A 36 -1 O ARG A 35 N THR A 23 SHEET 3 B 4 ILE A 53 VAL A 57 -1 O ILE A 54 N LEU A 31 SHEET 4 B 4 LEU A 82 LEU A 85 -1 O LEU A 85 N ILE A 53 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000