PDB Short entry for 2E8O HEADER SIGNALING PROTEIN 22-JAN-07 2E8O TITLE SOLUTION STRUCTURE OF THE N-TERMINAL SAM-DOMAIN OF THE SAM DOMAIN AND TITLE 2 HD DOMAIN CONTAINING PROTEIN 1 (DENDRITIC CELL-DERIVED IFNG-INDUCED TITLE 3 PROTEIN) (DCIP) (MONOCYTE PROTEIN 5) (MOP-5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM DOMAIN AND HD DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAM DOMAIN; COMPND 5 SYNONYM: DENDRITIC CELL-DERIVED IFNG-INDUCED PROTEIN, DCIP, MONOCYTE COMPND 6 PROTEIN 5, MOP-5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SAMHD1, MOP5; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060123-30; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CELL-FREE PROTEIN SYNTHESIS, PROTEIN REGULATION, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.K.GORONCY,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2E8O 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E8O 1 VERSN REVDAT 1 24-JUL-07 2E8O 0 JRNL AUTH A.K.GORONCY,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL SAM-DOMAIN OF THE SAM JRNL TITL 2 DOMAIN AND HD DOMAIN CONTAINING PROTEIN 1 (DENDRITIC JRNL TITL 3 CELL-DERIVED IFNG-INDUCED PROTEIN) (DCIP) (MONOCYTE PROTEIN JRNL TITL 4 5) (MOP-5) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.2.2 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E8O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026364. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.17MM SAM DOMAIN, 20MM D-TRIS REMARK 210 -HCL, 100MM NACL, 1MM D-DTT, REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.2.2, XWINNMR 3.5, REMARK 210 NMRPIPE 2003112, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.899A REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 114.98 -165.52 REMARK 500 1 ASP A 16 52.06 -103.73 REMARK 500 1 LEU A 21 -62.23 -106.64 REMARK 500 1 GLU A 22 -176.45 -171.03 REMARK 500 2 LEU A 92 -66.77 -90.72 REMARK 500 3 SER A 2 -71.62 -106.73 REMARK 500 3 PRO A 11 79.03 -69.70 REMARK 500 3 LEU A 92 -66.75 -90.35 REMARK 500 4 PRO A 11 97.53 -69.72 REMARK 500 4 LEU A 92 -66.85 -90.20 REMARK 500 5 SER A 6 105.28 -160.48 REMARK 500 5 THR A 10 140.43 -175.32 REMARK 500 5 SER A 12 -69.50 -127.82 REMARK 500 5 LEU A 92 -66.70 -90.55 REMARK 500 6 PRO A 11 -178.87 -69.74 REMARK 500 7 SER A 3 115.36 -170.61 REMARK 500 7 SER A 5 -60.42 -104.09 REMARK 500 7 SER A 12 -71.88 -65.83 REMARK 500 7 ASP A 16 112.28 -160.66 REMARK 500 7 LEU A 92 -65.55 -90.46 REMARK 500 8 SER A 3 42.90 -104.28 REMARK 500 8 ASN A 9 -45.26 -133.81 REMARK 500 8 PRO A 11 -172.40 -69.77 REMARK 500 8 LEU A 92 -65.89 -90.84 REMARK 500 9 LEU A 92 -65.83 -90.65 REMARK 500 10 ASN A 9 -71.53 -67.31 REMARK 500 10 THR A 10 135.58 66.04 REMARK 500 10 PRO A 11 92.99 -69.80 REMARK 500 10 ASP A 16 128.55 -174.52 REMARK 500 10 LEU A 92 -66.86 -90.54 REMARK 500 11 ALA A 13 126.63 -178.25 REMARK 500 11 ALA A 15 -176.80 -178.15 REMARK 500 11 ASP A 16 97.79 -59.37 REMARK 500 11 TRP A 17 147.21 -171.22 REMARK 500 12 LEU A 92 -66.76 -90.38 REMARK 500 13 SER A 2 103.93 -57.85 REMARK 500 13 THR A 10 135.25 66.20 REMARK 500 13 LEU A 92 -65.94 -90.07 REMARK 500 13 VAL A 102 139.12 -174.64 REMARK 500 14 PRO A 11 87.21 -69.76 REMARK 500 14 ALA A 13 50.34 -105.69 REMARK 500 15 SER A 3 -67.14 -93.50 REMARK 500 15 PRO A 11 -175.57 -69.74 REMARK 500 15 ALA A 13 118.79 -175.70 REMARK 500 15 ASP A 16 112.77 -174.65 REMARK 500 16 THR A 10 131.86 66.55 REMARK 500 17 SER A 3 114.14 -168.96 REMARK 500 17 PRO A 11 -171.14 -69.77 REMARK 500 17 ALA A 13 49.72 -142.19 REMARK 500 17 ASP A 16 96.56 -60.70 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002022401.1 RELATED DB: TARGETDB DBREF 2E8O A 8 103 UNP Q9Y3Z3 SAMH1_HUMAN 23 118 SEQADV 2E8O GLY A 1 UNP Q9Y3Z3 CLONING ARTIFACT SEQADV 2E8O SER A 2 UNP Q9Y3Z3 CLONING ARTIFACT SEQADV 2E8O SER A 3 UNP Q9Y3Z3 CLONING ARTIFACT SEQADV 2E8O GLY A 4 UNP Q9Y3Z3 CLONING ARTIFACT SEQADV 2E8O SER A 5 UNP Q9Y3Z3 CLONING ARTIFACT SEQADV 2E8O SER A 6 UNP Q9Y3Z3 CLONING ARTIFACT SEQADV 2E8O GLY A 7 UNP Q9Y3Z3 CLONING ARTIFACT SEQRES 1 A 103 GLY SER SER GLY SER SER GLY SER ASN THR PRO SER ALA SEQRES 2 A 103 GLU ALA ASP TRP SER PRO GLY LEU GLU LEU HIS PRO ASP SEQRES 3 A 103 TYR LYS THR TRP GLY PRO GLU GLN VAL CYS SER PHE LEU SEQRES 4 A 103 ARG ARG GLY GLY PHE GLU GLU PRO VAL LEU LEU LYS ASN SEQRES 5 A 103 ILE ARG GLU ASN GLU ILE THR GLY ALA LEU LEU PRO CYS SEQRES 6 A 103 LEU ASP GLU SER ARG PHE GLU ASN LEU GLY VAL SER SER SEQRES 7 A 103 LEU GLY GLU ARG LYS LYS LEU LEU SER TYR ILE GLN ARG SEQRES 8 A 103 LEU VAL GLN ILE HIS VAL ASP THR MET LYS VAL ILE HELIX 1 1 ASP A 26 THR A 29 5 4 HELIX 2 2 TRP A 30 GLY A 43 1 14 HELIX 3 3 GLU A 46 ASN A 56 1 11 HELIX 4 4 ASP A 67 LEU A 74 1 8 HELIX 5 5 SER A 78 GLN A 94 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000