PDB Short entry for 2E9K HEADER STRUCTURAL PROTEIN 25-JAN-07 2E9K TITLE SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN MICAL-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MICAL-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CH DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MICAL2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060522-24; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CH DOMAIN, ALL-ALPHA, ACTIN BINDING, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2E9K 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E9K 1 VERSN REVDAT 1 31-JUL-07 2E9K 0 JRNL AUTH T.TOMIZAWA,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN MICAL-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E9K COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026396. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.20MM CH DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060524, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9747, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 11 6.82 -69.79 REMARK 500 1 TYR A 25 169.58 -46.43 REMARK 500 1 THR A 34 -74.85 -128.85 REMARK 500 1 ASP A 64 49.73 -79.06 REMARK 500 1 PRO A 97 -178.23 -69.78 REMARK 500 1 ARG A 119 148.32 -39.50 REMARK 500 2 SER A 12 -36.49 -38.45 REMARK 500 2 GLU A 23 133.70 -37.29 REMARK 500 2 HIS A 27 28.86 43.11 REMARK 500 2 THR A 34 -44.94 -132.68 REMARK 500 2 ALA A 94 108.12 -56.97 REMARK 500 2 LEU A 118 78.77 -65.02 REMARK 500 2 ARG A 119 130.14 -34.75 REMARK 500 3 PRO A 11 8.84 -69.73 REMARK 500 3 TYR A 25 170.82 -52.77 REMARK 500 3 THR A 34 -61.11 -124.02 REMARK 500 3 ASP A 64 47.34 -77.16 REMARK 500 4 PRO A 11 4.89 -69.75 REMARK 500 4 THR A 22 33.98 -92.94 REMARK 500 4 TYR A 25 152.92 -36.41 REMARK 500 4 THR A 34 -53.00 -131.78 REMARK 500 4 PHE A 57 -36.14 -39.19 REMARK 500 4 ARG A 78 -61.68 -101.58 REMARK 500 4 PRO A 117 -172.31 -69.71 REMARK 500 4 LEU A 118 48.19 35.03 REMARK 500 5 SER A 5 46.28 -84.77 REMARK 500 5 SER A 6 43.34 -83.18 REMARK 500 5 PRO A 11 9.73 -69.74 REMARK 500 5 THR A 34 -38.13 -130.49 REMARK 500 5 LEU A 60 105.83 -52.54 REMARK 500 5 PRO A 97 -177.19 -69.74 REMARK 500 5 ARG A 114 93.94 -60.20 REMARK 500 6 PRO A 11 9.60 -69.80 REMARK 500 6 THR A 22 34.36 -90.85 REMARK 500 6 TYR A 25 153.74 -38.34 REMARK 500 6 HIS A 27 27.81 42.67 REMARK 500 6 THR A 34 -53.69 -126.27 REMARK 500 6 ASN A 56 79.57 -108.93 REMARK 500 6 ASP A 58 -34.59 -37.09 REMARK 500 6 ASP A 64 44.05 -79.84 REMARK 500 6 SER A 101 -38.42 -38.07 REMARK 500 6 ARG A 114 98.46 -62.90 REMARK 500 6 LEU A 118 151.84 -49.21 REMARK 500 7 SER A 3 108.79 -44.98 REMARK 500 7 THR A 22 30.57 -91.47 REMARK 500 7 TYR A 25 148.65 -34.84 REMARK 500 7 HIS A 27 29.27 47.11 REMARK 500 7 THR A 34 -52.09 -127.48 REMARK 500 7 ASP A 58 -37.92 -39.55 REMARK 500 7 ALA A 94 109.64 -50.39 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000732.1 RELATED DB: TARGETDB DBREF 2E9K A 8 121 UNP O94851 MICA2_HUMAN 516 629 SEQADV 2E9K GLY A 1 UNP O94851 CLONING ARTIFACT SEQADV 2E9K SER A 2 UNP O94851 CLONING ARTIFACT SEQADV 2E9K SER A 3 UNP O94851 CLONING ARTIFACT SEQADV 2E9K GLY A 4 UNP O94851 CLONING ARTIFACT SEQADV 2E9K SER A 5 UNP O94851 CLONING ARTIFACT SEQADV 2E9K SER A 6 UNP O94851 CLONING ARTIFACT SEQADV 2E9K GLY A 7 UNP O94851 CLONING ARTIFACT SEQRES 1 A 121 GLY SER SER GLY SER SER GLY ASP ILE ARG PRO SER LYS SEQRES 2 A 121 LEU LEU THR TRP CYS GLN GLN GLN THR GLU GLY TYR GLN SEQRES 3 A 121 HIS VAL ASN VAL THR ASP LEU THR THR SER TRP ARG SER SEQRES 4 A 121 GLY LEU ALA LEU CYS ALA ILE ILE HIS ARG PHE ARG PRO SEQRES 5 A 121 GLU LEU ILE ASN PHE ASP SER LEU ASN GLU ASP ASP ALA SEQRES 6 A 121 VAL GLU ASN ASN GLN LEU ALA PHE ASP VAL ALA GLU ARG SEQRES 7 A 121 GLU PHE GLY ILE PRO PRO VAL THR THR GLY LYS GLU MET SEQRES 8 A 121 ALA SER ALA GLN GLU PRO ASP LYS LEU SER MET VAL MET SEQRES 9 A 121 TYR LEU SER LYS PHE TYR GLU LEU PHE ARG GLY THR PRO SEQRES 10 A 121 LEU ARG PRO VAL HELIX 1 1 PRO A 11 GLU A 23 1 13 HELIX 2 2 THR A 34 ARG A 38 5 5 HELIX 3 3 GLY A 40 ARG A 51 1 12 HELIX 4 4 ASN A 61 ASP A 63 5 3 HELIX 5 5 ASP A 64 GLU A 79 1 16 HELIX 6 6 THR A 87 ALA A 94 1 8 HELIX 7 7 ASP A 98 ARG A 114 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000