PDB Short entry for 2EAP HEADER SIGNALING PROTEIN 31-JAN-07 2EAP TITLE SOLUTION STRUCTURE OF THE N-TERMINAL SAM-DOMAIN OF HUMAN LYMPHOCYTE TITLE 2 CYTOSOLIC PROTEIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYMPHOCYTE CYTOSOLIC PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL SAM DOMAIN, RESIDUES 8-90; COMPND 5 SYNONYM: SH2 DOMAIN-CONTAINING LEUKOCYTE PROTEIN OF 76 KDA, SLP-76 COMPND 6 TYROSINE PHOSPHOPROTEIN, SLP76; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LCP2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060327-18; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CELL-FREE PROTEIN SYNTHESIS, PROTEIN REGULATION, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.K.GORONCY,M.SATO,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EAP 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EAP 1 VERSN REVDAT 1 05-FEB-08 2EAP 0 JRNL AUTH A.K.GORONCY,M.SATO,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL SAM-DOMAIN OF HUMAN JRNL TITL 2 LYMPHOCYTE CYTOSOLIC PROTEIN 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.2.2 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EAP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026437. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.16MM SAM DOMAIN; 20MM D-TRIS REMARK 210 -HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02 % NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.2.2, XWINNMR 3.5, REMARK 210 NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9821 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -63.79 -133.18 REMARK 500 1 SER A 6 -74.13 -138.10 REMARK 500 1 MET A 8 31.79 -141.97 REMARK 500 1 ALA A 9 -169.87 -172.91 REMARK 500 1 LEU A 10 87.22 -68.27 REMARK 500 1 TYR A 36 67.22 -100.97 REMARK 500 1 HIS A 47 64.01 63.89 REMARK 500 1 ASN A 55 30.37 -95.80 REMARK 500 1 LEU A 56 106.91 -51.17 REMARK 500 1 ARG A 85 108.58 -59.02 REMARK 500 1 SER A 87 50.51 -171.95 REMARK 500 2 SER A 2 44.24 -98.05 REMARK 500 2 SER A 3 70.17 61.24 REMARK 500 2 SER A 6 88.91 -164.29 REMARK 500 2 ALA A 9 37.47 -150.49 REMARK 500 2 LEU A 10 78.14 -104.39 REMARK 500 2 TYR A 36 66.95 -100.78 REMARK 500 2 HIS A 47 63.95 63.75 REMARK 500 2 ASN A 55 30.12 -95.84 REMARK 500 2 LEU A 56 107.31 -51.08 REMARK 500 2 SER A 87 -178.67 61.73 REMARK 500 2 ILE A 88 70.17 59.31 REMARK 500 3 ARG A 11 -74.22 -61.90 REMARK 500 3 TYR A 36 67.02 -100.34 REMARK 500 3 HIS A 47 64.22 63.70 REMARK 500 3 ASN A 55 30.68 -96.21 REMARK 500 3 LEU A 56 107.25 -51.14 REMARK 500 3 ARG A 85 -169.86 52.57 REMARK 500 3 PHE A 89 27.40 -154.08 REMARK 500 4 SER A 2 80.86 57.56 REMARK 500 4 SER A 6 114.25 -171.87 REMARK 500 4 ALA A 9 -170.01 59.05 REMARK 500 4 LEU A 10 94.24 -64.41 REMARK 500 4 ARG A 11 -74.41 -75.19 REMARK 500 4 TYR A 36 68.31 -104.26 REMARK 500 4 HIS A 47 64.19 63.80 REMARK 500 4 ASN A 55 30.64 -96.87 REMARK 500 4 LEU A 56 108.78 -51.18 REMARK 500 4 GLU A 84 96.55 -61.85 REMARK 500 4 SER A 87 50.98 -147.76 REMARK 500 5 SER A 3 89.04 -155.62 REMARK 500 5 SER A 5 112.03 -161.89 REMARK 500 5 LEU A 10 101.97 -55.34 REMARK 500 5 ARG A 11 -74.31 -79.46 REMARK 500 5 TYR A 36 67.60 -102.14 REMARK 500 5 HIS A 47 64.74 63.95 REMARK 500 5 LEU A 56 108.05 -51.05 REMARK 500 5 SER A 87 82.51 54.08 REMARK 500 6 ALA A 9 -174.22 57.92 REMARK 500 6 LEU A 10 95.12 -64.39 REMARK 500 REMARK 500 THIS ENTRY HAS 146 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002011014.1 RELATED DB: TARGETDB DBREF 2EAP A 8 90 UNP Q13094 LCP2_HUMAN 1 83 SEQADV 2EAP GLY A 1 UNP Q13094 EXPRESSION TAG SEQADV 2EAP SER A 2 UNP Q13094 EXPRESSION TAG SEQADV 2EAP SER A 3 UNP Q13094 EXPRESSION TAG SEQADV 2EAP GLY A 4 UNP Q13094 EXPRESSION TAG SEQADV 2EAP SER A 5 UNP Q13094 EXPRESSION TAG SEQADV 2EAP SER A 6 UNP Q13094 EXPRESSION TAG SEQADV 2EAP GLY A 7 UNP Q13094 EXPRESSION TAG SEQRES 1 A 90 GLY SER SER GLY SER SER GLY MET ALA LEU ARG ASN VAL SEQRES 2 A 90 PRO PHE ARG SER GLU VAL LEU GLY TRP ASP PRO ASP SER SEQRES 3 A 90 LEU ALA ASP TYR PHE LYS LYS LEU ASN TYR LYS ASP CYS SEQRES 4 A 90 GLU LYS ALA VAL LYS LYS TYR HIS ILE ASP GLY ALA ARG SEQRES 5 A 90 PHE LEU ASN LEU THR GLU ASN ASP ILE GLN LYS PHE PRO SEQRES 6 A 90 LYS LEU ARG VAL PRO ILE LEU SER LYS LEU SER GLN GLU SEQRES 7 A 90 ILE ASN LYS ASN GLU GLU ARG ARG SER ILE PHE THR HELIX 1 1 PHE A 15 LEU A 20 1 6 HELIX 2 2 SER A 26 LEU A 34 1 9 HELIX 3 3 TYR A 36 TYR A 46 1 11 HELIX 4 4 ASP A 49 ASN A 55 1 7 HELIX 5 5 THR A 57 GLN A 62 1 6 HELIX 6 6 ARG A 68 LYS A 81 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000