PDB Short entry for 2EBK HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-FEB-07 2EBK TITLE SOLUTION STRUCTURE OF THE RWD DOMAIN OF HUMAN RWD DOMAIN CONTAINING TITLE 2 PROTEIN 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RWD DOMAIN-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RWD DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RWDD3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060313-08; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RWD DOMAIN, ALPHA+BETA SANDWICH FOLD, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 4 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YONEYAMA,S.KOSHIBA,S.WATABE,T.HARADA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EBK 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EBK 1 VERSN REVDAT 1 14-AUG-07 2EBK 0 JRNL AUTH M.YONEYAMA,S.KOSHIBA,S.WATABE,T.HARADA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RWD DOMAIN OF HUMAN RWD DOMAIN JRNL TITL 2 CONTAINING PROTEIN 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EBK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026468. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.63MM RWD DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 24 28.36 43.30 REMARK 500 1 ASP A 53 27.63 44.38 REMARK 500 1 PRO A 65 -176.17 -69.80 REMARK 500 1 GLN A 81 -60.65 -90.49 REMARK 500 1 SER A 103 26.90 45.79 REMARK 500 1 PRO A 105 96.85 -69.76 REMARK 500 1 LEU A 110 -38.41 -34.60 REMARK 500 1 ASN A 117 35.84 -84.70 REMARK 500 2 CYS A 24 39.62 34.11 REMARK 500 2 ASP A 38 -35.78 -34.49 REMARK 500 2 MET A 52 35.21 -95.79 REMARK 500 2 PRO A 65 -176.06 -69.82 REMARK 500 2 TYR A 68 150.03 -49.92 REMARK 500 2 LEU A 82 156.65 -43.30 REMARK 500 2 GLU A 92 -38.27 -39.18 REMARK 500 2 LEU A 101 30.38 -86.77 REMARK 500 2 PRO A 105 81.23 -69.77 REMARK 500 2 ASN A 117 35.33 -95.63 REMARK 500 2 LEU A 122 35.77 -83.69 REMARK 500 2 PRO A 125 -175.61 -69.80 REMARK 500 3 MET A 8 -64.99 -104.99 REMARK 500 3 CYS A 24 -33.93 -34.77 REMARK 500 3 ARG A 25 150.23 -34.41 REMARK 500 3 MET A 52 74.07 -119.99 REMARK 500 3 ASP A 53 45.66 35.94 REMARK 500 3 PRO A 57 90.55 -69.77 REMARK 500 3 PRO A 65 -173.24 -69.74 REMARK 500 3 TYR A 68 150.03 -38.55 REMARK 500 3 GLN A 81 -68.98 -95.65 REMARK 500 3 LEU A 82 155.58 -40.54 REMARK 500 3 CYS A 87 -26.54 -39.70 REMARK 500 3 LEU A 101 33.38 -93.93 REMARK 500 3 VAL A 107 -33.11 -34.36 REMARK 500 3 LEU A 122 46.37 -77.82 REMARK 500 3 PRO A 125 3.32 -69.77 REMARK 500 4 CYS A 24 -30.71 -35.96 REMARK 500 4 ARG A 25 153.23 -40.13 REMARK 500 4 LEU A 32 -70.30 -35.76 REMARK 500 4 GLU A 36 91.79 -56.20 REMARK 500 4 ASP A 53 45.14 36.32 REMARK 500 4 PRO A 57 94.72 -69.78 REMARK 500 4 PRO A 65 -164.11 -69.80 REMARK 500 4 PRO A 69 1.14 -69.77 REMARK 500 4 SER A 70 -36.57 -32.93 REMARK 500 4 PRO A 73 -175.27 -69.72 REMARK 500 4 CYS A 87 -35.11 -38.46 REMARK 500 4 LEU A 101 35.11 -95.50 REMARK 500 4 PRO A 105 98.14 -69.77 REMARK 500 4 ASN A 117 36.64 -86.19 REMARK 500 4 LEU A 122 39.92 -82.26 REMARK 500 REMARK 500 THIS ENTRY HAS 263 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002014355.1 RELATED DB: TARGETDB DBREF 2EBK A 8 128 UNP Q9Y3V2 RWDD3_HUMAN 1 121 SEQADV 2EBK GLY A 1 UNP Q9Y3V2 CLONING ARTIFACT SEQADV 2EBK SER A 2 UNP Q9Y3V2 CLONING ARTIFACT SEQADV 2EBK SER A 3 UNP Q9Y3V2 CLONING ARTIFACT SEQADV 2EBK GLY A 4 UNP Q9Y3V2 CLONING ARTIFACT SEQADV 2EBK SER A 5 UNP Q9Y3V2 CLONING ARTIFACT SEQADV 2EBK SER A 6 UNP Q9Y3V2 CLONING ARTIFACT SEQADV 2EBK GLY A 7 UNP Q9Y3V2 CLONING ARTIFACT SEQRES 1 A 128 GLY SER SER GLY SER SER GLY MET ALA GLU PRO VAL GLN SEQRES 2 A 128 GLU GLU LEU SER VAL LEU ALA ALA ILE PHE CYS ARG PRO SEQRES 3 A 128 HIS GLU TRP GLU VAL LEU SER ARG SER GLU THR ASP GLY SEQRES 4 A 128 THR VAL PHE ARG ILE HIS THR LYS ALA GLU GLY PHE MET SEQRES 5 A 128 ASP ALA ASP ILE PRO LEU GLU LEU VAL PHE HIS LEU PRO SEQRES 6 A 128 VAL ASN TYR PRO SER CYS LEU PRO GLY ILE SER ILE ASN SEQRES 7 A 128 SER GLU GLN LEU THR ARG ALA GLN CYS VAL THR VAL LYS SEQRES 8 A 128 GLU LYS LEU LEU GLU GLN ALA GLU SER LEU LEU SER GLU SEQRES 9 A 128 PRO MET VAL HIS GLU LEU VAL LEU TRP ILE GLN GLN ASN SEQRES 10 A 128 LEU ARG HIS ILE LEU SER GLN PRO GLU THR GLY HELIX 1 1 ALA A 9 CYS A 24 1 16 HELIX 2 2 THR A 83 LEU A 101 1 19 HELIX 3 3 PRO A 105 GLN A 115 1 11 HELIX 4 4 ASN A 117 SER A 123 1 7 SHEET 1 A 3 SER A 33 ARG A 34 0 SHEET 2 A 3 THR A 40 LYS A 47 -1 O VAL A 41 N SER A 33 SHEET 3 A 3 PRO A 57 LEU A 64 -1 O LEU A 64 N THR A 40 CISPEP 1 TYR A 68 PRO A 69 1 -0.01 CISPEP 2 TYR A 68 PRO A 69 2 -0.07 CISPEP 3 TYR A 68 PRO A 69 3 -0.07 CISPEP 4 TYR A 68 PRO A 69 4 -0.02 CISPEP 5 TYR A 68 PRO A 69 5 -0.01 CISPEP 6 TYR A 68 PRO A 69 6 -0.05 CISPEP 7 TYR A 68 PRO A 69 7 0.03 CISPEP 8 TYR A 68 PRO A 69 8 -0.03 CISPEP 9 TYR A 68 PRO A 69 9 -0.04 CISPEP 10 TYR A 68 PRO A 69 10 -0.10 CISPEP 11 TYR A 68 PRO A 69 11 -0.02 CISPEP 12 TYR A 68 PRO A 69 12 -0.11 CISPEP 13 TYR A 68 PRO A 69 13 -0.07 CISPEP 14 TYR A 68 PRO A 69 14 -0.04 CISPEP 15 TYR A 68 PRO A 69 15 -0.07 CISPEP 16 TYR A 68 PRO A 69 16 -0.10 CISPEP 17 TYR A 68 PRO A 69 17 -0.04 CISPEP 18 TYR A 68 PRO A 69 18 -0.03 CISPEP 19 TYR A 68 PRO A 69 19 -0.06 CISPEP 20 TYR A 68 PRO A 69 20 -0.07 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000