PDB Short entry for 2EBT
HEADER    TRANSCRIPTION                           09-FEB-07   2EBT              
TITLE     SOLUTION STRUCTURE OF THREE TANDEM REPEATS OF ZF-C2H2 DOMAINS FROM    
TITLE    2 HUMAN KRUPPEL-LIKE FACTOR 5                                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: KRUEPPEL-LIKE FACTOR 5;                                    
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: ZF-C2H2;                                                   
COMPND   5 SYNONYM: INTESTINAL-ENRICHED KRUEPPEL-LIKE FACTOR, COLON KRUEPPEL-   
COMPND   6 LIKE FACTOR, TRANSCRIPTION FACTOR BTEB2, BASIC TRANSCRIPTION ELEMENT-
COMPND   7 BINDING PROTEIN 2, BTE-BINDING PROTEIN 2, GC BOX-BINDING PROTEIN 2;  
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   6 EXPRESSION_SYSTEM_PLASMID: P060116-02;                               
SOURCE   7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    C2H2-TYPE ZINC-FINGER, METAL BIND, TRANSCRIPTION FACTOR, KRUPPEL-LIKE 
KEYWDS   2 FACTOR, GC-BOX PROMOTER ELEMENTS, STRUCTURAL GENOMICS, NPPSFA,       
KEYWDS   3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES,      
KEYWDS   4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION 
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS 
AUTHOR   2 INITIATIVE (RSGI)                                                    
REVDAT   3   09-MAR-22 2EBT    1       REMARK SEQADV LINK                       
REVDAT   2   24-FEB-09 2EBT    1       VERSN                                    
REVDAT   1   19-FEB-08 2EBT    0                                                
JRNL        AUTH   T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA                             
JRNL        TITL   SOLUTION STRUCTURE OF THREE TANDEM REPEATS OF ZF-C2H2        
JRNL        TITL 2 DOMAINS FROM HUMAN KRUPPEL-LIKE FACTOR 5                     
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : VNMR 6.1C, CYANA 2.0.17                              
REMARK   3   AUTHORS     : VARIAN (VNMR), GUNTERT, P. (CYANA)                   
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2EBT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-07.                  
REMARK 100 THE DEPOSITION ID IS D_1000026475.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 293                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 0.59MM UNIFORMLY 13C/15N           
REMARK 210                                   -LABELLED PROTEIN, 20MM TRISHCL,   
REMARK 210                                   100MM NACL, 1MM DTT, 0.02% NAN3,   
REMARK 210                                   50UM ZNCL2, 1MM IDA, 10% D2O, 90%  
REMARK 210                                   H2O                                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_13C-SEPARATED_NOESY; 3D_15N     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 900 MHZ; 800 MHZ                   
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20020425, NMRVIEW 5.0.4,   
REMARK 210                                   KUJIRA 0.9822, CYANA 2.0.17        
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY, TARGET FUNCTION            
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A 362      129.28   -174.07                                   
REMARK 500  1 PRO A 365     -170.23    -69.76                                   
REMARK 500  1 LYS A 369      159.94    -39.50                                   
REMARK 500  1 ASP A 376       41.36    -81.85                                   
REMARK 500  1 THR A 385       35.12    -85.61                                   
REMARK 500  1 GLU A 400      135.39   -173.46                                   
REMARK 500  1 THR A 406       48.33    -80.31                                   
REMARK 500  1 PRO A 432        2.79    -69.71                                   
REMARK 500  2 SER A 362      147.28   -175.03                                   
REMARK 500  2 PRO A 365     -175.98    -69.75                                   
REMARK 500  2 ARG A 370      136.58   -173.53                                   
REMARK 500  2 ASP A 376       40.64    -87.43                                   
REMARK 500  2 THR A 406       43.34    -81.81                                   
REMARK 500  2 PRO A 432        2.61    -69.79                                   
REMARK 500  3 CYS A 375      128.73    -35.94                                   
REMARK 500  3 ASP A 376       36.23    -84.85                                   
REMARK 500  3 CYS A 405      109.76    -54.94                                   
REMARK 500  3 THR A 406       47.93    -76.21                                   
REMARK 500  3 THR A 428       30.62    -84.47                                   
REMARK 500  3 CYS A 435      174.60    -56.26                                   
REMARK 500  3 ASN A 439       43.63     71.16                                   
REMARK 500  4 ASP A 376       41.15    -81.67                                   
REMARK 500  4 THR A 398      129.39    -38.81                                   
REMARK 500  4 THR A 406       45.78    -82.74                                   
REMARK 500  4 GLN A 456      163.00    -44.32                                   
REMARK 500  5 PRO A 365     -175.64    -69.77                                   
REMARK 500  5 LYS A 369      115.69   -163.11                                   
REMARK 500  5 ASP A 376       39.25    -82.99                                   
REMARK 500  5 THR A 385       37.28    -84.69                                   
REMARK 500  5 THR A 398      120.97    -37.57                                   
REMARK 500  5 GLU A 400       95.25    -45.61                                   
REMARK 500  5 THR A 406       46.08    -83.20                                   
REMARK 500  5 THR A 428       30.96    -99.42                                   
REMARK 500  6 ARG A 370      144.13   -170.82                                   
REMARK 500  6 CYS A 375      133.95    -36.52                                   
REMARK 500  6 THR A 406       43.85    -82.81                                   
REMARK 500  7 SER A 359      142.73   -173.17                                   
REMARK 500  7 ASP A 366      108.20   -172.48                                   
REMARK 500  7 ASP A 376       37.70    -84.27                                   
REMARK 500  7 THR A 406       43.30    -79.72                                   
REMARK 500  8 PRO A 365     -175.78    -69.76                                   
REMARK 500  8 ASP A 376       32.88    -84.57                                   
REMARK 500  8 CYS A 380      139.45    -37.79                                   
REMARK 500  8 THR A 385      -19.83    -49.66                                   
REMARK 500  8 ARG A 395      -37.32    -34.50                                   
REMARK 500  8 LYS A 401       70.47   -111.49                                   
REMARK 500  8 THR A 406       42.26    -82.30                                   
REMARK 500  9 PRO A 365     -176.22    -69.76                                   
REMARK 500  9 ASP A 376       41.47    -81.80                                   
REMARK 500  9 LYS A 401       76.18   -107.31                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     132 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A 100  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 375   SG                                                     
REMARK 620 2 CYS A 380   SG  107.0                                              
REMARK 620 3 HIS A 393   NE2 109.7 111.5                                        
REMARK 620 4 HIS A 397   NE2 111.8 110.8 106.2                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A 200  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 405   SG                                                     
REMARK 620 2 CYS A 410   SG  106.0                                              
REMARK 620 3 HIS A 423   NE2 112.7 113.2                                        
REMARK 620 4 HIS A 427   NE2 110.1 113.2 101.7                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A 300  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 435   SG                                                     
REMARK 620 2 CYS A 438   SG  104.6                                              
REMARK 620 3 HIS A 451   NE2 113.5 110.7                                        
REMARK 620 4 HIS A 455   NE2 110.8 114.4 103.1                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 100                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSO003006302.1   RELATED DB: TARGETDB                    
DBREF  2EBT A  365   457  UNP    Q13887   KLF5_HUMAN     365    457             
SEQADV 2EBT GLY A  358  UNP  Q13887              EXPRESSION TAG                 
SEQADV 2EBT SER A  359  UNP  Q13887              EXPRESSION TAG                 
SEQADV 2EBT SER A  360  UNP  Q13887              EXPRESSION TAG                 
SEQADV 2EBT GLY A  361  UNP  Q13887              EXPRESSION TAG                 
SEQADV 2EBT SER A  362  UNP  Q13887              EXPRESSION TAG                 
SEQADV 2EBT SER A  363  UNP  Q13887              EXPRESSION TAG                 
SEQADV 2EBT GLY A  364  UNP  Q13887              EXPRESSION TAG                 
SEQRES   1 A  100  GLY SER SER GLY SER SER GLY PRO ASP LEU GLU LYS ARG          
SEQRES   2 A  100  ARG ILE HIS TYR CYS ASP TYR PRO GLY CYS THR LYS VAL          
SEQRES   3 A  100  TYR THR LYS SER SER HIS LEU LYS ALA HIS LEU ARG THR          
SEQRES   4 A  100  HIS THR GLY GLU LYS PRO TYR LYS CYS THR TRP GLU GLY          
SEQRES   5 A  100  CYS ASP TRP ARG PHE ALA ARG SER ASP GLU LEU THR ARG          
SEQRES   6 A  100  HIS TYR ARG LYS HIS THR GLY ALA LYS PRO PHE GLN CYS          
SEQRES   7 A  100  GLY VAL CYS ASN ARG SER PHE SER ARG SER ASP HIS LEU          
SEQRES   8 A  100  ALA LEU HIS MET LYS ARG HIS GLN ASN                          
HET     ZN  A 100       1                                                       
HET     ZN  A 200       1                                                       
HET     ZN  A 300       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2   ZN    3(ZN 2+)                                                     
HELIX    1   1 LYS A  386  THR A  398  1                                  13    
HELIX    2   2 ARG A  416  THR A  428  1                                  13    
HELIX    3   3 ARG A  444  GLN A  456  1                                  13    
SHEET    1   A 2 HIS A 373  TYR A 374  0                                        
SHEET    2   A 2 VAL A 383  TYR A 384 -1  O  TYR A 384   N  HIS A 373           
SHEET    1   B 2 TYR A 403  LYS A 404  0                                        
SHEET    2   B 2 ARG A 413  PHE A 414 -1  O  PHE A 414   N  TYR A 403           
LINK        ZN    ZN A 100                 SG  CYS A 375     1555   1555  2.29  
LINK        ZN    ZN A 100                 SG  CYS A 380     1555   1555  2.25  
LINK        ZN    ZN A 100                 NE2 HIS A 393     1555   1555  2.03  
LINK        ZN    ZN A 100                 NE2 HIS A 397     1555   1555  2.00  
LINK        ZN    ZN A 200                 SG  CYS A 405     1555   1555  2.33  
LINK        ZN    ZN A 200                 SG  CYS A 410     1555   1555  2.35  
LINK        ZN    ZN A 200                 NE2 HIS A 423     1555   1555  2.05  
LINK        ZN    ZN A 200                 NE2 HIS A 427     1555   1555  2.05  
LINK        ZN    ZN A 300                 SG  CYS A 435     1555   1555  2.32  
LINK        ZN    ZN A 300                 SG  CYS A 438     1555   1555  2.31  
LINK        ZN    ZN A 300                 NE2 HIS A 451     1555   1555  2.01  
LINK        ZN    ZN A 300                 NE2 HIS A 455     1555   1555  2.05  
SITE     1 AC1  4 CYS A 375  CYS A 380  HIS A 393  HIS A 397                    
SITE     1 AC2  4 CYS A 405  CYS A 410  HIS A 423  HIS A 427                    
SITE     1 AC3  4 CYS A 435  CYS A 438  HIS A 451  HIS A 455                    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000