PDB Short entry for 2ED2 HEADER TRANSCRIPTION 14-FEB-07 2ED2 TITLE SOLUTION STRUCTURE OF RSGI RUH-069, A GTF2I DOMAIN IN HUMAN CDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR II-I; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GTF2I DOMAIN; COMPND 5 SYNONYM: GTFII-I, TFII-I, BRUTON TYROSINE KINASE-ASSOCIATED PROTEIN COMPND 6 135, BTK-ASSOCIATED PROTEIN 135, BAP-135, SRF-PHOX1-INTERACTING COMPND 7 PROTEIN, SPIN, WILLIAMS-BEUREN SYNDROME CHROMOSOME REGION 6 PROTEIN, COMPND 8 RSGI RUH-069; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GTF2I; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050627-14; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS (E.COLI) KEYWDS TRANSCRIPTION FACTOR, UNKNOWN FUNCTION, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.DOI-KATAYAMA,H.HIROTA,K.IZUMI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2ED2 1 REMARK SEQADV REVDAT 2 24-FEB-09 2ED2 1 VERSN REVDAT 1 14-AUG-07 2ED2 0 JRNL AUTH Y.DOI-KATAYAMA,H.HIROTA,K.IZUMI,F.HAYASHI,M.YOSHIDA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-069, A GTF2I DOMAIN IN HUMAN JRNL TITL 2 CDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA NMR 4.3.2, CYANA 1.0.7 REMARK 3 AUTHORS : JEOL (DELTA NMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ED2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026515. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15MM GTF2I DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL (PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9747, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 54 HH TYR A 61 1.44 REMARK 500 H GLU A 47 O LYS A 77 1.51 REMARK 500 O PHE A 16 H PHE A 20 1.53 REMARK 500 O LEU A 8 H VAL A 12 1.57 REMARK 500 O MET A 11 H LEU A 15 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 96.85 49.06 REMARK 500 1 PRO A 54 -169.28 -75.05 REMARK 500 1 TYR A 61 139.86 -38.51 REMARK 500 1 ILE A 80 72.92 -113.04 REMARK 500 1 THR A 87 79.59 54.96 REMARK 500 1 HIS A 88 179.12 59.29 REMARK 500 1 SER A 89 -62.36 -127.48 REMARK 500 1 THR A 91 55.32 -167.33 REMARK 500 1 GLU A 92 78.38 51.70 REMARK 500 1 SER A 98 -59.13 74.69 REMARK 500 2 SER A 2 90.22 60.79 REMARK 500 2 SER A 6 131.96 170.52 REMARK 500 2 PRO A 54 -163.33 -75.02 REMARK 500 2 TYR A 61 139.18 -39.35 REMARK 500 2 LEU A 66 -70.82 -45.15 REMARK 500 2 ILE A 76 154.99 -43.44 REMARK 500 2 ILE A 80 72.14 -105.37 REMARK 500 2 THR A 87 89.62 58.20 REMARK 500 2 SER A 89 73.45 -165.94 REMARK 500 2 GLU A 92 157.98 75.78 REMARK 500 2 SER A 97 163.72 -45.57 REMARK 500 3 SER A 2 129.34 64.65 REMARK 500 3 SER A 5 -58.42 80.29 REMARK 500 3 PRO A 54 -163.93 -75.00 REMARK 500 3 TYR A 61 138.62 -38.09 REMARK 500 3 ILE A 76 155.32 -46.87 REMARK 500 3 ILE A 80 74.48 -106.93 REMARK 500 3 ARG A 82 89.86 -156.63 REMARK 500 3 HIS A 88 -50.38 85.22 REMARK 500 3 SER A 94 -60.20 -177.33 REMARK 500 3 SER A 97 77.84 41.80 REMARK 500 4 SER A 2 145.48 61.83 REMARK 500 4 LYS A 18 -70.18 -71.02 REMARK 500 4 PRO A 54 -162.62 -74.99 REMARK 500 4 ILE A 76 154.71 -47.78 REMARK 500 4 ILE A 80 73.38 -107.76 REMARK 500 4 THR A 87 96.43 63.00 REMARK 500 5 SER A 3 -51.67 -154.97 REMARK 500 5 SER A 5 132.87 62.38 REMARK 500 5 SER A 6 -63.03 -161.06 REMARK 500 5 ASP A 43 -60.14 -96.74 REMARK 500 5 TYR A 61 136.81 -37.63 REMARK 500 5 ILE A 80 72.86 -105.80 REMARK 500 5 THR A 87 -77.66 65.57 REMARK 500 5 SER A 97 126.20 -171.75 REMARK 500 5 SER A 98 105.09 64.35 REMARK 500 6 SER A 2 -56.29 -166.97 REMARK 500 6 SER A 3 80.35 57.99 REMARK 500 6 SER A 5 116.26 -170.58 REMARK 500 6 SER A 6 91.46 -174.13 REMARK 500 REMARK 500 THIS ENTRY HAS 203 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001981.3 RELATED DB: TARGETDB DBREF 2ED2 A 8 93 UNP P78347 GTF2I_HUMAN 466 551 SEQADV 2ED2 GLY A 1 UNP P78347 CLONING ARTIFACT SEQADV 2ED2 SER A 2 UNP P78347 CLONING ARTIFACT SEQADV 2ED2 SER A 3 UNP P78347 CLONING ARTIFACT SEQADV 2ED2 GLY A 4 UNP P78347 CLONING ARTIFACT SEQADV 2ED2 SER A 5 UNP P78347 CLONING ARTIFACT SEQADV 2ED2 SER A 6 UNP P78347 CLONING ARTIFACT SEQADV 2ED2 GLY A 7 UNP P78347 CLONING ARTIFACT SEQADV 2ED2 SER A 94 UNP P78347 CLONING ARTIFACT SEQADV 2ED2 GLY A 95 UNP P78347 CLONING ARTIFACT SEQADV 2ED2 PRO A 96 UNP P78347 CLONING ARTIFACT SEQADV 2ED2 SER A 97 UNP P78347 CLONING ARTIFACT SEQADV 2ED2 SER A 98 UNP P78347 CLONING ARTIFACT SEQADV 2ED2 GLY A 99 UNP P78347 CLONING ARTIFACT SEQRES 1 A 99 GLY SER SER GLY SER SER GLY LEU ARG LYS MET VAL ASP SEQRES 2 A 99 GLN LEU PHE CYS LYS LYS PHE ALA GLU ALA LEU GLY SER SEQRES 3 A 99 THR GLU ALA LYS ALA VAL PRO TYR GLN LYS PHE GLU ALA SEQRES 4 A 99 HIS PRO ASN ASP LEU TYR VAL GLU GLY LEU PRO GLU ASN SEQRES 5 A 99 ILE PRO PHE ARG SER PRO SER TRP TYR GLY ILE PRO ARG SEQRES 6 A 99 LEU GLU LYS ILE ILE GLN VAL GLY ASN ARG ILE LYS PHE SEQRES 7 A 99 VAL ILE LYS ARG PRO GLU LEU LEU THR HIS SER THR THR SEQRES 8 A 99 GLU VAL SER GLY PRO SER SER GLY HELIX 1 1 LEU A 8 LEU A 24 1 17 HELIX 2 2 TYR A 34 ALA A 39 1 6 HELIX 3 3 ILE A 63 GLN A 71 1 9 HELIX 4 4 GLU A 84 LEU A 86 5 3 SHEET 1 A 2 LEU A 44 GLU A 47 0 SHEET 2 A 2 LYS A 77 ILE A 80 -1 O LYS A 77 N GLU A 47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000