PDB Short entry for 2EJS
HEADER    LIGASE                                  20-MAR-07   2EJS              
TITLE     SOLUTION STRUCTURE OF RUH-076, A HUMAN CUE DOMAIN                     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: AUTOCRINE MOTILITY FACTOR RECEPTOR, ISOFORM 2;             
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: CUE DOMAIN;                                                
COMPND   5 SYNONYM: AMF RECEPTOR, GP78;                                         
COMPND   6 EC: 6.3.2.-;                                                         
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   6 EXPRESSION_SYSTEM_PLASMID: P060904-10;                               
SOURCE   7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    CUE, UBIQUITIN LIGASE COMPLEX, UBIQUITIN-CONJUGATING ENZYME,          
KEYWDS   2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL  
KEYWDS   3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS        
KEYWDS   4 INITIATIVE, RSGI, LIGASE                                             
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    A.Z.M.RUHUL MOMEN,S.KITASAKA,H.HIROTA,F.HAYASHI,S.YOKOYAMA,RIKEN      
AUTHOR   2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)                     
REVDAT   3   09-MAR-22 2EJS    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 2EJS    1       VERSN                                    
REVDAT   1   25-SEP-07 2EJS    0                                                
JRNL        AUTH   A.Z.M.RUHUL MOMEN,S.KITASAKA,H.HIROTA,F.HAYASHI,S.YOKOYAMA   
JRNL        TITL   SOLUTION STRUCTURE OF RUH-076, A HUMAN CUE DOMAIN            
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : VNMR 6.1C, CYANA 1.07                                
REMARK   3   AUTHORS     : VARIAN (VNMR), GUNTERT, P. (CYANA)                   
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2EJS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-07.                  
REMARK 100 THE DEPOSITION ID IS D_1000026750.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM NACL                         
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.24MM DOMAIN U-15N, 13C; 20MM D   
REMARK 210                                   -TRIS-HCL (PH7.0); 100MM NACL;     
REMARK 210                                   1MM D-DTT; 0.02% NAN3; 90%H2O,     
REMARK 210                                   10%D2O                             
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_13C-SEPARATED_NOESY; 3D_15N     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20031121, NMRVIEW 5.04,    
REMARK 210                                   KUJIRA 0.955                       
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS, STRUCTURES   
REMARK 210                                   WITH THE LOWEST ENERGY, TARGET     
REMARK 210                                   FUNCTION                           
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    ILE A    20     H    PHE A    24              1.54            
REMARK 500   O    ASP A    35     H    THR A    39              1.58            
REMARK 500   O    THR A    46     H    LEU A    50              1.59            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   3      105.80   -168.94                                   
REMARK 500  1 SER A   6      170.76     66.31                                   
REMARK 500  1 SER A   9      -50.35   -169.74                                   
REMARK 500  1 ASN A  10       95.13     58.79                                   
REMARK 500  1 LEU A  38      -62.20   -103.00                                   
REMARK 500  1 SER A  41      103.81   -172.89                                   
REMARK 500  1 ARG A  53      -57.10   -130.90                                   
REMARK 500  1 ILE A  54       95.70    -69.31                                   
REMARK 500  2 SER A   3       89.85     47.78                                   
REMARK 500  2 SER A   6       84.96   -157.30                                   
REMARK 500  2 ALA A   8      -63.37   -160.12                                   
REMARK 500  2 ASN A  10      153.85     61.38                                   
REMARK 500  2 SER A  11       89.11     54.91                                   
REMARK 500  2 SER A  41      103.32   -172.12                                   
REMARK 500  2 VAL A  42      -30.16    -39.98                                   
REMARK 500  2 ARG A  53      -53.67   -131.86                                   
REMARK 500  3 SER A   5      114.22     62.89                                   
REMARK 500  3 SER A   6      108.98    -40.52                                   
REMARK 500  3 SER A  11      106.52   -169.37                                   
REMARK 500  3 LEU A  33      -70.26    -40.86                                   
REMARK 500  3 LEU A  38      -61.56   -104.35                                   
REMARK 500  3 SER A  41      104.41   -171.94                                   
REMARK 500  3 VAL A  42      -30.15    -39.98                                   
REMARK 500  3 ARG A  53      -61.36   -122.28                                   
REMARK 500  4 ALA A   8       70.90     46.13                                   
REMARK 500  4 ASN A  10       97.13     60.43                                   
REMARK 500  4 GLN A  21      -35.99    -38.44                                   
REMARK 500  4 SER A  41      108.09   -171.46                                   
REMARK 500  4 GLU A  43      -71.01    -66.11                                   
REMARK 500  4 ILE A  49      -60.18    -93.49                                   
REMARK 500  4 ARG A  53      -54.16   -145.44                                   
REMARK 500  5 SER A   5       91.32   -174.18                                   
REMARK 500  5 ASN A  10      -63.27   -101.56                                   
REMARK 500  5 SER A  11       89.39     48.66                                   
REMARK 500  5 GLN A  34      -70.01    -38.82                                   
REMARK 500  5 SER A  41      103.09   -173.54                                   
REMARK 500  5 VAL A  42      -34.24    -38.86                                   
REMARK 500  6 SER A   2      166.50     59.68                                   
REMARK 500  6 SER A   3      -58.52   -161.12                                   
REMARK 500  6 SER A   5      102.07     66.10                                   
REMARK 500  6 LEU A  33      -70.71    -40.56                                   
REMARK 500  6 LEU A  38      -62.46   -105.12                                   
REMARK 500  6 SER A  41      102.68   -171.86                                   
REMARK 500  6 VAL A  42      -30.16    -39.91                                   
REMARK 500  7 SER A   3       98.48   -177.75                                   
REMARK 500  7 SER A   5      -58.37    178.01                                   
REMARK 500  7 ALA A   8      159.07     60.83                                   
REMARK 500  7 ASN A  10      -57.77   -162.81                                   
REMARK 500  7 LEU A  38      -63.29   -103.83                                   
REMARK 500  7 SER A  41      102.81   -170.25                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     154 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSO003007849.1   RELATED DB: TARGETDB                    
DBREF  2EJS A    8    58  UNP    Q9UKV5   AMFR2_HUMAN    452    502             
SEQADV 2EJS GLY A    1  UNP  Q9UKV5              EXPRESSION TAG                 
SEQADV 2EJS SER A    2  UNP  Q9UKV5              EXPRESSION TAG                 
SEQADV 2EJS SER A    3  UNP  Q9UKV5              EXPRESSION TAG                 
SEQADV 2EJS GLY A    4  UNP  Q9UKV5              EXPRESSION TAG                 
SEQADV 2EJS SER A    5  UNP  Q9UKV5              EXPRESSION TAG                 
SEQADV 2EJS SER A    6  UNP  Q9UKV5              EXPRESSION TAG                 
SEQADV 2EJS GLY A    7  UNP  Q9UKV5              EXPRESSION TAG                 
SEQRES   1 A   58  GLY SER SER GLY SER SER GLY ALA SER ASN SER GLN LEU          
SEQRES   2 A   58  ASN ALA MET ALA HIS GLN ILE GLN GLU MET PHE PRO GLN          
SEQRES   3 A   58  VAL PRO TYR HIS LEU VAL LEU GLN ASP LEU GLN LEU THR          
SEQRES   4 A   58  ARG SER VAL GLU ILE THR THR ASP ASN ILE LEU GLU GLY          
SEQRES   5 A   58  ARG ILE GLN VAL PRO PHE                                      
HELIX    1   1 SER A   11  PHE A   24  1                                  14    
HELIX    2   2 PRO A   28  ARG A   40  1                                  13    
HELIX    3   3 SER A   41  GLY A   52  1                                  12    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000