PDB Short entry for 2EKX
HEADER    SIGNALING PROTEIN                       26-MAR-07   2EKX              
TITLE     SOLUTION STRUCTURE OF THE HUMAN BMX SH2 DOMAIN                        
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: CYTOPLASMIC TYROSINE-PROTEIN KINASE BMX;                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: SH2 DOMAIN;                                                
COMPND   5 SYNONYM: BONE MARROW TYROSINE KINASE GENE IN CHROMOSOME X PROTEIN,   
COMPND   6 EPITHELIAL AND ENDOTHELIAL TYROSINE KINASE, ETK, NTK38;              
COMPND   7 EC: 2.7.10.2;                                                        
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: BMX;                                                           
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P061225-65;                               
SOURCE   8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    SH2 DOMAIN, PHOSPHOTYROSINE BINDING DOMAIN, PROTEIN TYROSINE KINASE,  
KEYWDS   2 SIGNAL TRANSDUCTION, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT   
KEYWDS   3 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL      
KEYWDS   4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN              
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    T.KASAI,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA,RIKEN       
AUTHOR   2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)                     
REVDAT   3   09-MAR-22 2EKX    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 2EKX    1       VERSN                                    
REVDAT   1   02-OCT-07 2EKX    0                                                
JRNL        AUTH   T.KASAI,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA    
JRNL        TITL   SOLUTION STRUCTURE OF THE HUMAN BMX SH2 DOMAIN               
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 3.5, CYANA 2.0.17                            
REMARK   3   AUTHORS     : BRUKER (XWINNMR), GUNTERT, P. (CYANA)                
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2EKX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-07.                  
REMARK 100 THE DEPOSITION ID IS D_1000026791.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 296                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.13MM SH2 DOMAIN U-15N, 13C;      
REMARK 210                                   20MM D-TRIS-HCL(PH 7.0); 100MM     
REMARK 210                                   NACL; 1MM D-DTT; 0.02% NAN3; 90%   
REMARK 210                                   H2O, 10% D2O                       
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY; 3D_13C     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20031121, NMRVIEW 5.0.4,   
REMARK 210                                   KUJIRA 0.9810, CYANA 2.0.17        
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS,            
REMARK 210                                   RESTRAINTED MOLECULAR DYNAMICS     
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS, STRUCTURES   
REMARK 210                                   WITH THE LOWEST ENERGY, TARGET     
REMARK 210                                   FUNCTION                           
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   2       42.23     36.08                                   
REMARK 500  1 SER A   6       28.06     38.97                                   
REMARK 500  1 TYR A  11      170.29    -46.00                                   
REMARK 500  1 PHE A  14       96.82    -61.72                                   
REMARK 500  1 ASN A  17      104.58    -57.95                                   
REMARK 500  1 ASN A  81       30.23     73.31                                   
REMARK 500  1 SER A  98      173.89    -48.91                                   
REMARK 500  1 ALA A  99      -57.34   -122.80                                   
REMARK 500  1 THR A 103      150.52    -39.60                                   
REMARK 500  2 LEU A   8       35.46    -97.30                                   
REMARK 500  2 PHE A  14      100.35    -59.93                                   
REMARK 500  2 GLU A  33      115.90    -39.62                                   
REMARK 500  2 ALA A  35      146.30    -37.61                                   
REMARK 500  2 LYS A  59      -72.22    -35.87                                   
REMARK 500  2 GLU A  73       32.68    -86.60                                   
REMARK 500  2 ASN A  74       45.59     39.16                                   
REMARK 500  2 ILE A 102      103.60    -51.06                                   
REMARK 500  2 THR A 103      162.35    -42.03                                   
REMARK 500  2 LEU A 105      116.49    -37.68                                   
REMARK 500  2 ARG A 106      -70.50    -80.49                                   
REMARK 500  3 ASP A  10       48.78   -102.91                                   
REMARK 500  3 ALA A  15      -61.09   -102.66                                   
REMARK 500  3 GLU A  33      106.83    -36.55                                   
REMARK 500  3 ALA A  35      154.09    -38.93                                   
REMARK 500  3 SER A  42      -65.69    -93.45                                   
REMARK 500  3 MET A  46     -179.28    -65.18                                   
REMARK 500  3 GLU A  73       40.26    -85.22                                   
REMARK 500  3 ASN A  74       34.10     35.85                                   
REMARK 500  3 ASN A  81       39.37     74.48                                   
REMARK 500  3 ARG A 104       95.89    -53.77                                   
REMARK 500  4 SER A   3      154.21    -49.28                                   
REMARK 500  4 TYR A  11      168.26    -44.00                                   
REMARK 500  4 PHE A  14      100.67    -57.70                                   
REMARK 500  4 SER A  41      152.59    -45.50                                   
REMARK 500  4 SER A  42      -74.42    -59.48                                   
REMARK 500  4 GLN A  43       55.20   -117.35                                   
REMARK 500  4 ASN A  74       37.95     73.96                                   
REMARK 500  4 SER A  98      172.05    -49.80                                   
REMARK 500  5 LEU A   8       43.33   -108.80                                   
REMARK 500  5 TYR A  11     -178.76    -59.71                                   
REMARK 500  5 SER A  41     -177.62    -53.79                                   
REMARK 500  5 SER A  42       72.96    -67.44                                   
REMARK 500  5 GLN A  43       43.92     36.32                                   
REMARK 500  5 MET A  46      179.37    -51.38                                   
REMARK 500  5 ALA A  55      177.20    -55.13                                   
REMARK 500  5 LYS A  60      -66.04   -123.43                                   
REMARK 500  5 VAL A  68       99.66    -69.04                                   
REMARK 500  5 GLU A  73       39.92    -94.29                                   
REMARK 500  5 ILE A 102      122.67    -37.61                                   
REMARK 500  5 LEU A 105      100.68    -57.55                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     218 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSI002011645.2   RELATED DB: TARGETDB                    
DBREF  2EKX A    8   110  UNP    P51813   BMX_HUMAN      291    393             
SEQADV 2EKX GLY A    1  UNP  P51813              EXPRESSION TAG                 
SEQADV 2EKX SER A    2  UNP  P51813              EXPRESSION TAG                 
SEQADV 2EKX SER A    3  UNP  P51813              EXPRESSION TAG                 
SEQADV 2EKX GLY A    4  UNP  P51813              EXPRESSION TAG                 
SEQADV 2EKX SER A    5  UNP  P51813              EXPRESSION TAG                 
SEQADV 2EKX SER A    6  UNP  P51813              EXPRESSION TAG                 
SEQADV 2EKX GLY A    7  UNP  P51813              EXPRESSION TAG                 
SEQRES   1 A  110  GLY SER SER GLY SER SER GLY LEU ASP ASP TYR ASP TRP          
SEQRES   2 A  110  PHE ALA GLY ASN ILE SER ARG SER GLN SER GLU GLN LEU          
SEQRES   3 A  110  LEU ARG GLN LYS GLY LYS GLU GLY ALA PHE MET VAL ARG          
SEQRES   4 A  110  ASN SER SER GLN VAL GLY MET TYR THR VAL SER LEU PHE          
SEQRES   5 A  110  SER LYS ALA VAL ASN ASP LYS LYS GLY THR VAL LYS HIS          
SEQRES   6 A  110  TYR HIS VAL HIS THR ASN ALA GLU ASN LYS LEU TYR LEU          
SEQRES   7 A  110  ALA GLU ASN TYR CYS PHE ASP SER ILE PRO LYS LEU ILE          
SEQRES   8 A  110  HIS TYR HIS GLN HIS ASN SER ALA GLY MET ILE THR ARG          
SEQRES   9 A  110  LEU ARG HIS PRO VAL SER                                      
HELIX    1   1 SER A   19  LYS A   30  1                                  12    
HELIX    2   2 SER A   86  ASN A   97  1                                  12    
SHEET    1   A 4 LYS A  64  HIS A  67  0                                        
SHEET    2   A 4 TYR A  47  LEU A  51 -1  N  LEU A  51   O  LYS A  64           
SHEET    3   A 4 ALA A  35  ASN A  40 -1  N  ARG A  39   O  THR A  48           
SHEET    4   A 4 HIS A 107  PRO A 108  1  O  HIS A 107   N  PHE A  36           
SHEET    1   B 2 HIS A  69  THR A  70  0                                        
SHEET    2   B 2 LEU A  76  TYR A  77 -1  O  TYR A  77   N  HIS A  69           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000