PDB Short entry for 2EMC HEADER TRANSCRIPTION 28-MAR-07 2EMC TITLE SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 641-673) OF TITLE 2 HUMAN ZINC FINGER PROTEIN 473 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 473; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 100 HOMOLOG, ZFP-100; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF473; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P070115-30; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZF-C2H2, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,N.TOCHIO,H.ABE,K.SAITO,H.LI,M.SATO,S.KOSHIBA,N.KOBAYASHI, AUTHOR 2 T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI) REVDAT 3 09-MAR-22 2EMC 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EMC 1 VERSN REVDAT 1 02-OCT-07 2EMC 0 JRNL AUTH N.TOCHIO,T.TOMIZAWA,H.ABE,K.SAITO,H.LI,M.SATO,S.KOSHIBA, JRNL AUTH 2 N.KOBAYASHI,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION JRNL TITL 2 641-673) OF HUMAN ZINC FINGER PROTEIN 473 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (TOPSPIN), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EMC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000026842. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM SAMPLE U-15N,13C; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 0.050MM REMARK 210 ZNCL2; 1MM IDA; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 26 -39.50 -34.56 REMARK 500 1 ASN A 39 147.45 -172.75 REMARK 500 1 SER A 41 -177.79 -64.39 REMARK 500 1 SER A 45 110.25 -160.90 REMARK 500 2 SER A 2 42.57 36.61 REMARK 500 2 SER A 3 109.80 -51.64 REMARK 500 2 SER A 44 -56.04 -120.60 REMARK 500 3 SER A 6 -60.73 -105.28 REMARK 500 3 THR A 8 46.35 34.10 REMARK 500 4 GLU A 10 -39.93 -131.02 REMARK 500 4 CYS A 18 -43.86 -134.65 REMARK 500 4 ALA A 26 -38.99 -35.91 REMARK 500 4 SER A 45 105.66 -39.43 REMARK 500 5 SER A 6 -61.69 -97.70 REMARK 500 5 HIS A 11 156.57 -46.92 REMARK 500 5 GLU A 38 27.93 42.65 REMARK 500 6 GLU A 38 40.85 -92.88 REMARK 500 6 ASN A 39 74.23 -107.36 REMARK 500 6 SER A 41 42.09 -93.42 REMARK 500 6 PRO A 43 0.79 -69.78 REMARK 500 7 LYS A 9 45.79 -98.67 REMARK 500 7 GLU A 10 63.63 -112.09 REMARK 500 7 LYS A 20 -178.28 -66.09 REMARK 500 7 HIS A 24 126.36 -173.21 REMARK 500 7 GLU A 38 110.43 -36.06 REMARK 500 7 ASN A 39 140.98 -172.77 REMARK 500 8 LYS A 9 41.41 -103.19 REMARK 500 8 CYS A 18 -31.95 -130.09 REMARK 500 8 PRO A 40 99.40 -69.78 REMARK 500 8 SER A 44 89.29 -47.23 REMARK 500 9 PRO A 40 92.25 -69.80 REMARK 500 10 ALA A 26 -38.78 -34.09 REMARK 500 10 ALA A 36 37.75 -89.71 REMARK 500 10 GLU A 38 45.03 -89.43 REMARK 500 11 ALA A 36 -176.34 -54.92 REMARK 500 11 GLU A 38 81.60 -56.31 REMARK 500 11 SER A 45 102.81 -59.95 REMARK 500 12 THR A 8 75.72 -119.13 REMARK 500 12 PRO A 43 -174.70 -69.78 REMARK 500 12 SER A 45 -58.41 -127.22 REMARK 500 13 SER A 3 141.52 -35.19 REMARK 500 13 SER A 6 123.16 -38.17 REMARK 500 13 ALA A 26 -39.21 -34.39 REMARK 500 13 PRO A 40 97.54 -69.82 REMARK 500 13 PRO A 43 2.00 -69.74 REMARK 500 14 SER A 44 41.59 72.26 REMARK 500 15 LYS A 9 73.55 -108.07 REMARK 500 15 ALA A 26 -37.40 -34.03 REMARK 500 15 PRO A 40 0.48 -69.81 REMARK 500 17 LYS A 9 151.07 -34.48 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 15 SG REMARK 620 2 CYS A 18 SG 100.1 REMARK 620 3 HIS A 31 NE2 113.6 99.3 REMARK 620 4 HIS A 35 NE2 109.5 112.4 119.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003003493.7 RELATED DB: TARGETDB DBREF 2EMC A 8 40 UNP Q8WTR7 ZN473_HUMAN 641 673 SEQADV 2EMC GLY A 1 UNP Q8WTR7 EXPRESSION TAG SEQADV 2EMC SER A 2 UNP Q8WTR7 EXPRESSION TAG SEQADV 2EMC SER A 3 UNP Q8WTR7 EXPRESSION TAG SEQADV 2EMC GLY A 4 UNP Q8WTR7 EXPRESSION TAG SEQADV 2EMC SER A 5 UNP Q8WTR7 EXPRESSION TAG SEQADV 2EMC SER A 6 UNP Q8WTR7 EXPRESSION TAG SEQADV 2EMC GLY A 7 UNP Q8WTR7 EXPRESSION TAG SEQADV 2EMC SER A 41 UNP Q8WTR7 EXPRESSION TAG SEQADV 2EMC GLY A 42 UNP Q8WTR7 EXPRESSION TAG SEQADV 2EMC PRO A 43 UNP Q8WTR7 EXPRESSION TAG SEQADV 2EMC SER A 44 UNP Q8WTR7 EXPRESSION TAG SEQADV 2EMC SER A 45 UNP Q8WTR7 EXPRESSION TAG SEQADV 2EMC GLY A 46 UNP Q8WTR7 EXPRESSION TAG SEQRES 1 A 46 GLY SER SER GLY SER SER GLY THR LYS GLU HIS PRO PHE SEQRES 2 A 46 LYS CYS ASN GLU CYS GLY LYS THR PHE SER HIS SER ALA SEQRES 3 A 46 HIS LEU SER LYS HIS GLN LEU ILE HIS ALA GLY GLU ASN SEQRES 4 A 46 PRO SER GLY PRO SER SER GLY HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 HIS A 24 LEU A 33 1 10 SHEET 1 A 2 PHE A 13 LYS A 14 0 SHEET 2 A 2 THR A 21 PHE A 22 -1 O PHE A 22 N PHE A 13 LINK SG CYS A 15 ZN ZN A 201 1555 1555 2.31 LINK SG CYS A 18 ZN ZN A 201 1555 1555 2.33 LINK NE2 HIS A 31 ZN ZN A 201 1555 1555 2.06 LINK NE2 HIS A 35 ZN ZN A 201 1555 1555 2.09 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000