PDB Short entry for 2ENZ HEADER TRANSFERASE 28-MAR-07 2ENZ TITLE SOLUTION STRUCTURE OF THE SECOND C1 DOMAIN FROM HUMAN PROTEIN KINASE C TITLE 2 THETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE C THETA TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C1 DOMAIN, PHORBOL-ESTER/DAG-TYPE 2; COMPND 5 SYNONYM: NPKC-THETA; COMPND 6 EC: 2.7.11.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P060227-08; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZINC BINDING, DAG/PE-BINDING PROTEIN, DIACYLGLYCEROL, PHORBOL ESTER, KEYWDS 2 TCR, T-CELL, PKC, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2ENZ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2ENZ 1 VERSN REVDAT 1 01-APR-08 2ENZ 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND C1 DOMAIN FROM HUMAN JRNL TITL 2 PROTEIN KINASE C THETA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.1 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ENZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000026893. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.08MM UNIFORMLY 13C,15N-LABELED REMARK 210 PROTEIN; 20MM TRISHCL; 100MM REMARK 210 NACL; 1MM DTT; 0.02% NAN3; REMARK 210 0.05MM ZNCL2; 1MM IDA; 10% D2O, REMARK 210 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9822, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 233 69.27 -69.99 REMARK 500 1 LEU A 255 -56.82 -124.19 REMARK 500 1 ARG A 257 43.36 -109.02 REMARK 500 1 GLN A 258 86.68 -52.44 REMARK 500 1 ALA A 264 -74.14 -96.57 REMARK 500 1 ASN A 279 41.56 -94.43 REMARK 500 2 LYS A 227 64.18 -105.47 REMARK 500 2 ARG A 233 72.46 -69.96 REMARK 500 2 SER A 241 147.15 62.22 REMARK 500 2 CYS A 245 109.06 -53.32 REMARK 500 2 HIS A 247 -67.05 -93.14 REMARK 500 2 LEU A 255 -72.58 -125.57 REMARK 500 2 ARG A 257 41.89 -104.30 REMARK 500 2 HIS A 270 -175.24 -52.63 REMARK 500 2 ASN A 279 45.74 -95.63 REMARK 500 3 SER A 225 114.39 -39.62 REMARK 500 3 ARG A 233 70.12 -69.39 REMARK 500 3 HIS A 247 -71.64 -119.33 REMARK 500 3 LEU A 251 157.80 -47.76 REMARK 500 3 LEU A 255 -74.84 -102.63 REMARK 500 3 GLN A 258 43.30 34.32 REMARK 500 3 ALA A 264 -71.58 -101.65 REMARK 500 3 HIS A 270 -174.92 -52.19 REMARK 500 4 ASP A 229 102.73 -40.84 REMARK 500 4 ARG A 233 72.64 -66.43 REMARK 500 4 LEU A 251 168.37 -44.70 REMARK 500 4 ALA A 264 -71.39 -112.67 REMARK 500 4 HIS A 270 -175.28 -51.58 REMARK 500 4 ASN A 279 34.63 -88.35 REMARK 500 5 ASP A 229 114.68 -37.47 REMARK 500 5 ARG A 233 69.58 -69.69 REMARK 500 5 CYS A 245 101.48 -56.81 REMARK 500 5 HIS A 247 -70.82 -82.67 REMARK 500 5 LEU A 251 178.32 -59.28 REMARK 500 5 LEU A 255 -64.72 -108.41 REMARK 500 5 GLN A 258 38.67 35.84 REMARK 500 5 HIS A 270 -177.91 -58.77 REMARK 500 5 ILE A 283 -89.12 -72.66 REMARK 500 6 ARG A 233 74.39 -63.63 REMARK 500 6 LYS A 240 -62.23 -130.81 REMARK 500 6 HIS A 247 -67.15 -121.76 REMARK 500 6 ARG A 272 -63.29 -93.87 REMARK 500 7 ILE A 228 76.20 -107.67 REMARK 500 7 SER A 241 144.35 -39.00 REMARK 500 7 HIS A 247 -70.09 -87.23 REMARK 500 7 TRP A 253 130.92 -173.23 REMARK 500 7 ALA A 256 -34.43 -37.61 REMARK 500 7 ARG A 257 36.51 -86.65 REMARK 500 7 GLN A 258 -74.29 -41.28 REMARK 500 7 HIS A 270 179.06 -51.64 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 232 ND1 REMARK 620 2 CYS A 262 SG 117.9 REMARK 620 3 CYS A 265 SG 107.0 104.5 REMARK 620 4 CYS A 281 SG 112.1 107.3 107.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 245 SG REMARK 620 2 CYS A 248 SG 103.6 REMARK 620 3 HIS A 270 ND1 109.4 105.5 REMARK 620 4 CYS A 273 SG 111.6 109.0 116.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 DBREF 2ENZ A 227 284 UNP Q04759 KPCT_HUMAN 227 284 SEQADV 2ENZ GLY A 220 UNP Q04759 EXPRESSION TAG SEQADV 2ENZ SER A 221 UNP Q04759 EXPRESSION TAG SEQADV 2ENZ SER A 222 UNP Q04759 EXPRESSION TAG SEQADV 2ENZ GLY A 223 UNP Q04759 EXPRESSION TAG SEQADV 2ENZ SER A 224 UNP Q04759 EXPRESSION TAG SEQADV 2ENZ SER A 225 UNP Q04759 EXPRESSION TAG SEQADV 2ENZ GLY A 226 UNP Q04759 EXPRESSION TAG SEQRES 1 A 65 GLY SER SER GLY SER SER GLY LYS ILE ASP MET PRO HIS SEQRES 2 A 65 ARG PHE LYS VAL TYR ASN TYR LYS SER PRO THR PHE CYS SEQRES 3 A 65 GLU HIS CYS GLY THR LEU LEU TRP GLY LEU ALA ARG GLN SEQRES 4 A 65 GLY LEU LYS CYS ASP ALA CYS GLY MET ASN VAL HIS HIS SEQRES 5 A 65 ARG CYS GLN THR LYS VAL ALA ASN LEU CYS GLY ILE ASN HET ZN A 300 1 HET ZN A 400 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) SHEET 1 A 3 PHE A 234 VAL A 236 0 SHEET 2 A 3 LEU A 260 CYS A 262 -1 O LYS A 261 N LYS A 235 SHEET 3 A 3 ASN A 268 VAL A 269 -1 O VAL A 269 N LEU A 260 LINK ND1 HIS A 232 ZN ZN A 300 1555 1555 2.05 LINK SG CYS A 245 ZN ZN A 400 1555 1555 2.35 LINK SG CYS A 248 ZN ZN A 400 1555 1555 2.35 LINK SG CYS A 262 ZN ZN A 300 1555 1555 2.27 LINK SG CYS A 265 ZN ZN A 300 1555 1555 2.35 LINK ND1 HIS A 270 ZN ZN A 400 1555 1555 2.05 LINK SG CYS A 273 ZN ZN A 400 1555 1555 2.29 LINK SG CYS A 281 ZN ZN A 300 1555 1555 2.26 SITE 1 AC1 3 PRO A 231 HIS A 232 ARG A 233 SITE 1 AC2 3 CYS A 245 HIS A 247 HIS A 270 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000