PDB Short entry for 2EQG HEADER HYDROLASE 30-MAR-07 2EQG TITLE SOLUTION STRUCTURE OF THE FIRST A20-TYPE ZINC FINGER DOMAIN FROM HUMAN TITLE 2 TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: A20-TYPE ZINC FINGER DOMAIN; COMPND 5 SYNONYM: PUTATIVE DNA-BINDING PROTEIN A20, ZINC FINGER PROTEIN A20; COMPND 6 EC: 3.-.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNFAIP3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P070115-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZF-A20 DOMAIN, TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN 3, KEYWDS 2 PUTATIVE DNA-BINDING PROTEIN A20, ZINC FINGER PROTEIN A20, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.P.ZHANG,F.HAYAHSI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EQG 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EQG 1 VERSN REVDAT 1 02-OCT-07 2EQG 0 JRNL AUTH H.P.ZHANG,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST A20-TYPE ZINC FINGER DOMAIN JRNL TITL 2 FROM HUMAN TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EQG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000026981. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.08MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 0.05MM ZNCL2+1MM IDA; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9818, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 LEU A 9 107.24 -54.78 REMARK 500 2 PRO A 17 0.21 -69.75 REMARK 500 3 PRO A 17 3.15 -69.78 REMARK 500 4 PRO A 17 0.75 -69.83 REMARK 500 5 PRO A 46 86.70 -69.76 REMARK 500 6 PRO A 17 0.22 -69.77 REMARK 500 7 LEU A 9 105.00 -56.07 REMARK 500 7 PRO A 17 0.41 -69.73 REMARK 500 7 SER A 35 -37.09 -39.48 REMARK 500 7 PRO A 46 99.52 -69.77 REMARK 500 8 PRO A 17 1.35 -69.79 REMARK 500 8 PRO A 20 0.85 -69.66 REMARK 500 9 SER A 3 175.46 -58.26 REMARK 500 9 PRO A 46 88.51 -69.78 REMARK 500 10 LEU A 9 109.78 -58.24 REMARK 500 10 PRO A 20 2.96 -69.78 REMARK 500 10 PRO A 46 98.99 -69.74 REMARK 500 11 LEU A 9 104.96 -54.83 REMARK 500 11 PRO A 17 0.19 -69.79 REMARK 500 12 LEU A 9 107.99 -55.98 REMARK 500 13 GLU A 33 -31.89 -39.12 REMARK 500 13 SER A 35 -33.55 -35.10 REMARK 500 14 SER A 35 -37.43 -32.05 REMARK 500 14 PRO A 46 3.10 -69.76 REMARK 500 15 PRO A 17 0.89 -69.83 REMARK 500 16 LEU A 9 104.31 -57.13 REMARK 500 16 PRO A 17 1.32 -69.75 REMARK 500 16 PRO A 46 2.56 -69.76 REMARK 500 17 LYS A 40 -32.37 -37.51 REMARK 500 17 PRO A 46 84.33 -69.74 REMARK 500 18 PRO A 46 96.13 -69.80 REMARK 500 20 PRO A 17 1.24 -69.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 14 SG REMARK 620 2 CYS A 19 SG 110.4 REMARK 620 3 CYS A 31 SG 112.8 105.1 REMARK 620 4 CYS A 34 SG 105.5 107.1 115.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003100168.1 RELATED DB: TARGETDB DBREF 2EQG A 8 43 UNP P21580 TNAP3_HUMAN 381 416 SEQADV 2EQG GLY A 1 UNP P21580 EXPRESSION TAG SEQADV 2EQG SER A 2 UNP P21580 EXPRESSION TAG SEQADV 2EQG SER A 3 UNP P21580 EXPRESSION TAG SEQADV 2EQG GLY A 4 UNP P21580 EXPRESSION TAG SEQADV 2EQG SER A 5 UNP P21580 EXPRESSION TAG SEQADV 2EQG SER A 6 UNP P21580 EXPRESSION TAG SEQADV 2EQG GLY A 7 UNP P21580 EXPRESSION TAG SEQADV 2EQG SER A 44 UNP P21580 EXPRESSION TAG SEQADV 2EQG GLY A 45 UNP P21580 EXPRESSION TAG SEQADV 2EQG PRO A 46 UNP P21580 EXPRESSION TAG SEQADV 2EQG SER A 47 UNP P21580 EXPRESSION TAG SEQADV 2EQG SER A 48 UNP P21580 EXPRESSION TAG SEQADV 2EQG GLY A 49 UNP P21580 EXPRESSION TAG SEQRES 1 A 49 GLY SER SER GLY SER SER GLY SER LEU MET ASP VAL LYS SEQRES 2 A 49 CYS GLU THR PRO ASN CYS PRO PHE PHE MET SER VAL ASN SEQRES 3 A 49 THR GLN PRO LEU CYS HIS GLU CYS SER GLU ARG ARG GLN SEQRES 4 A 49 LYS ASN GLN ASN SER GLY PRO SER SER GLY HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 CYS A 31 LYS A 40 1 10 LINK SG CYS A 14 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 19 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 31 ZN ZN A 201 1555 1555 2.25 LINK SG CYS A 34 ZN ZN A 201 1555 1555 2.28 CISPEP 1 GLN A 28 PRO A 29 1 -0.02 CISPEP 2 GLN A 28 PRO A 29 2 0.01 CISPEP 3 GLN A 28 PRO A 29 3 -0.01 CISPEP 4 GLN A 28 PRO A 29 4 -0.08 CISPEP 5 GLN A 28 PRO A 29 5 0.00 CISPEP 6 GLN A 28 PRO A 29 6 0.03 CISPEP 7 GLN A 28 PRO A 29 7 0.02 CISPEP 8 GLN A 28 PRO A 29 8 0.04 CISPEP 9 GLN A 28 PRO A 29 9 0.12 CISPEP 10 GLN A 28 PRO A 29 10 -0.04 CISPEP 11 GLN A 28 PRO A 29 11 -0.04 CISPEP 12 GLN A 28 PRO A 29 12 -0.05 CISPEP 13 GLN A 28 PRO A 29 13 -0.01 CISPEP 14 GLN A 28 PRO A 29 14 -0.05 CISPEP 15 GLN A 28 PRO A 29 15 0.05 CISPEP 16 GLN A 28 PRO A 29 16 0.04 CISPEP 17 GLN A 28 PRO A 29 17 -0.03 CISPEP 18 GLN A 28 PRO A 29 18 0.03 CISPEP 19 GLN A 28 PRO A 29 19 -0.06 CISPEP 20 GLN A 28 PRO A 29 20 -0.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000