PDB Short entry for 2ERY HEADER SIGNALING PROTEIN 25-OCT-05 2ERY TITLE THE CRYSTAL STRUCTURE OF THE RAS RELATED PROTEIN RRAS2 (RRAS2) IN THE TITLE 2 GDP BOUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN R-RAS2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RAS-LIKE PROTEIN TC21, TERATOCARCINOMA ONCOGENE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RRAS2, TC21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3)R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS RRAS2, GDP/GTP BINDING, GTP HYDROLYSIS, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.SALAH,G.SCHOCH,A.TURNBULL,E.PAPAGRIGORIOU,M.SOUNDARARAJAN, AUTHOR 2 N.BURGESS,J.ELKINS,C.GILEADI,O.GILEADI,F.VON DELFT,A.EDWARDS, AUTHOR 3 C.ARROWSMITH,J.WEIGELT,M.SUNDSTROM,D.DOYLE,STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (SGC) REVDAT 5 23-AUG-23 2ERY 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2ERY 1 VERSN REVDAT 3 05-MAY-10 2ERY 1 AUTHOR JRNL REVDAT 2 24-FEB-09 2ERY 1 VERSN REVDAT 1 08-NOV-05 2ERY 0 JRNL AUTH E.SALAH,G.SCHOCH,A.TURNBULL,E.PAPAGRIGORIOU,M.SOUNDARARAJAN, JRNL AUTH 2 N.BURGESS,J.ELKINS,C.GILEADI,O.GILEADI,F.VON DELFT, JRNL AUTH 3 A.EDWARDS,C.ARROWSMITH,J.WEIGELT,M.SUNDSTROM,D.DOYLE JRNL TITL THE CRYSTAL STRUCTURE OF THE RAS RELATED PROTEIN RRAS2 JRNL TITL 2 (RRAS2) IN THE GDP BOUND STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 38848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2062 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2548 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 173 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2688 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.00000 REMARK 3 B22 (A**2) : 3.24000 REMARK 3 B33 (A**2) : -1.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2836 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2600 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3824 ; 1.352 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5997 ; 1.575 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 337 ; 8.911 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;30.775 ;23.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 519 ;13.636 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;12.328 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 419 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3127 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 627 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 534 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2792 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1388 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1747 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 201 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.029 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 66 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.123 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1749 ; 0.693 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 697 ; 0.162 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2690 ; 0.997 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1275 ; 1.575 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1132 ; 2.292 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 13 A 70 6 REMARK 3 1 B 13 B 70 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 793 ; 1.29 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 793 ; 1.15 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 82 A 180 6 REMARK 3 1 B 82 B 180 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 2 A (A): 1396 ; 0.47 ; 5.00 REMARK 3 LOOSE THERMAL 2 A (A**2): 1396 ; 0.86 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9806 4.1165 4.4665 REMARK 3 T TENSOR REMARK 3 T11: 0.0515 T22: -0.0593 REMARK 3 T33: 0.0578 T12: 0.0045 REMARK 3 T13: 0.0261 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 4.3458 L22: 0.9035 REMARK 3 L33: 5.0393 L12: 0.7753 REMARK 3 L13: 0.2308 L23: -0.2135 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: 0.0763 S13: -0.1705 REMARK 3 S21: 0.0819 S22: -0.0464 S23: -0.1524 REMARK 3 S31: -0.0615 S32: -0.1299 S33: 0.0357 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5332 1.9229 1.4539 REMARK 3 T TENSOR REMARK 3 T11: 0.0294 T22: -0.0259 REMARK 3 T33: 0.0487 T12: -0.0093 REMARK 3 T13: 0.0068 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 2.4293 L22: 0.6122 REMARK 3 L33: 3.8656 L12: 0.0495 REMARK 3 L13: -0.0709 L23: -0.1866 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: 0.1553 S13: -0.0147 REMARK 3 S21: -0.0235 S22: 0.0112 S23: 0.0068 REMARK 3 S31: -0.0913 S32: 0.0455 S33: -0.0237 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1819 2.4380 4.5989 REMARK 3 T TENSOR REMARK 3 T11: 0.0083 T22: 0.0173 REMARK 3 T33: 0.0309 T12: 0.0038 REMARK 3 T13: 0.0023 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 5.8086 L22: 1.1036 REMARK 3 L33: 2.9896 L12: 0.5189 REMARK 3 L13: 2.2373 L23: 0.1194 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.2764 S13: -0.0910 REMARK 3 S21: 0.0493 S22: 0.0154 S23: -0.0275 REMARK 3 S31: -0.0597 S32: 0.2491 S33: -0.0424 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0695 2.3153 4.2519 REMARK 3 T TENSOR REMARK 3 T11: 0.0127 T22: -0.0107 REMARK 3 T33: 0.0407 T12: 0.0067 REMARK 3 T13: -0.0002 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.5792 L22: 1.1657 REMARK 3 L33: 4.5240 L12: 0.5417 REMARK 3 L13: 0.1217 L23: 0.2007 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: 0.0689 S13: 0.0436 REMARK 3 S21: 0.0816 S22: -0.0260 S23: -0.0243 REMARK 3 S31: -0.1599 S32: -0.0619 S33: 0.0040 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 55 REMARK 3 ORIGIN FOR THE GROUP (A): -18.5258 -5.5036 -6.0650 REMARK 3 T TENSOR REMARK 3 T11: 0.0577 T22: 0.0263 REMARK 3 T33: 0.1095 T12: 0.0267 REMARK 3 T13: -0.0297 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 4.7353 L22: 1.3217 REMARK 3 L33: 4.0982 L12: 0.4734 REMARK 3 L13: 0.5176 L23: 1.3359 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: 0.0846 S13: 0.0826 REMARK 3 S21: -0.1258 S22: -0.1040 S23: 0.0956 REMARK 3 S31: -0.2261 S32: -0.0853 S33: 0.1242 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 56 B 95 REMARK 3 ORIGIN FOR THE GROUP (A): -16.9412 -2.7390 -5.2904 REMARK 3 T TENSOR REMARK 3 T11: 0.0053 T22: 0.1030 REMARK 3 T33: 0.0508 T12: 0.0283 REMARK 3 T13: -0.0024 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 3.8159 L22: 0.7865 REMARK 3 L33: 1.7643 L12: 0.1279 REMARK 3 L13: 0.1130 L23: -0.2370 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0750 S13: -0.0024 REMARK 3 S21: 0.0297 S22: -0.0171 S23: -0.0540 REMARK 3 S31: 0.0581 S32: 0.1259 S33: 0.0120 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 96 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5889 -3.8597 -6.4762 REMARK 3 T TENSOR REMARK 3 T11: -0.0063 T22: 0.1966 REMARK 3 T33: 0.0194 T12: 0.0276 REMARK 3 T13: -0.0098 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 4.6206 L22: 1.3274 REMARK 3 L33: 2.4278 L12: -0.3896 REMARK 3 L13: -1.4042 L23: 0.4481 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.1888 S13: 0.0449 REMARK 3 S21: -0.0056 S22: 0.0550 S23: 0.0064 REMARK 3 S31: 0.0479 S32: 0.4072 S33: -0.0579 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 143 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8316 -3.9272 -5.8076 REMARK 3 T TENSOR REMARK 3 T11: 0.0215 T22: 0.0517 REMARK 3 T33: 0.0469 T12: -0.0036 REMARK 3 T13: -0.0092 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 5.7999 L22: 0.7325 REMARK 3 L33: 3.0903 L12: -0.0127 REMARK 3 L13: 1.4897 L23: 0.2031 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: -0.0050 S13: -0.2143 REMARK 3 S21: -0.0787 S22: -0.0412 S23: -0.0512 REMARK 3 S31: 0.0472 S32: -0.1357 S33: -0.0178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ERY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000035018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99989 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40966 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID 1X1R.PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 % PEG3350, 0.005 M MGCL2, 0.005 M REMARK 280 COCL2, 0.1 M BIS TRIS, 0.1 M MG(FORMATE)2, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K, PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.09550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.03650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.05750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.03650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.09550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.05750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 71 REMARK 465 GLN A 72 REMARK 465 GLU A 73 REMARK 465 GLU A 74 REMARK 465 GLN A 181 REMARK 465 SER B 10 REMARK 465 MET B 11 REMARK 465 GLN B 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 10 OG REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 LYS A 14 CE NZ REMARK 470 ASP A 42 OD1 OD2 REMARK 470 ARG A 63 CZ NH1 NH2 REMARK 470 LYS A 106 CE NZ REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 LYS B 14 CD CE NZ REMARK 470 ASP B 42 CG OD1 OD2 REMARK 470 ILE B 47 CD1 REMARK 470 ARG B 63 NE CZ NH1 NH2 REMARK 470 GLN B 72 CG CD OE1 NE2 REMARK 470 LYS B 106 CE NZ REMARK 470 GLN B 110 CD OE1 NE2 REMARK 470 GLU B 140 CD OE1 OE2 REMARK 470 LYS B 150 CD CE NZ REMARK 470 LYS B 177 CD CE NZ REMARK 470 GLN B 181 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 84 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 58.66 -147.89 REMARK 500 ASP A 44 113.80 -38.71 REMARK 500 ASP B 42 51.98 -145.41 REMARK 500 ASP B 44 122.61 -38.16 REMARK 500 ARG B 84 -77.47 -24.82 REMARK 500 GLU B 180 -114.00 -111.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 22 GLY A 23 66.09 REMARK 500 MET B 83 ARG B 84 114.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 3 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 1 O2B REMARK 620 2 SER A 28 OG 89.6 REMARK 620 3 HOH A 324 O 91.3 177.9 REMARK 620 4 HOH A 328 O 171.6 91.8 87.5 REMARK 620 5 HOH A 332 O 93.1 86.7 91.4 95.2 REMARK 620 6 HOH A 333 O 86.5 87.9 94.0 85.3 174.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 4 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP B 2 O2B REMARK 620 2 SER B 28 OG 94.2 REMARK 620 3 HOH B 206 O 168.6 91.6 REMARK 620 4 HOH B 291 O 81.7 94.6 88.0 REMARK 620 5 HOH B 299 O 97.0 81.3 93.7 175.6 REMARK 620 6 HOH B 300 O 88.2 172.5 87.3 92.8 91.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 2 DBREF 2ERY A 12 181 UNP P62070 RRAS2_HUMAN 12 181 DBREF 2ERY B 12 181 UNP P62070 RRAS2_HUMAN 12 181 SEQADV 2ERY SER A 10 UNP P62070 CLONING ARTIFACT SEQADV 2ERY MET A 11 UNP P62070 CLONING ARTIFACT SEQADV 2ERY SER B 10 UNP P62070 CLONING ARTIFACT SEQADV 2ERY MET B 11 UNP P62070 CLONING ARTIFACT SEQRES 1 A 172 SER MET GLN GLU LYS TYR ARG LEU VAL VAL VAL GLY GLY SEQRES 2 A 172 GLY GLY VAL GLY LYS SER ALA LEU THR ILE GLN PHE ILE SEQRES 3 A 172 GLN SER TYR PHE VAL THR ASP TYR ASP PRO THR ILE GLU SEQRES 4 A 172 ASP SER TYR THR LYS GLN CYS VAL ILE ASP ASP ARG ALA SEQRES 5 A 172 ALA ARG LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU SEQRES 6 A 172 PHE GLY ALA MET ARG GLU GLN TYR MET ARG THR GLY GLU SEQRES 7 A 172 GLY PHE LEU LEU VAL PHE SER VAL THR ASP ARG GLY SER SEQRES 8 A 172 PHE GLU GLU ILE TYR LYS PHE GLN ARG GLN ILE LEU ARG SEQRES 9 A 172 VAL LYS ASP ARG ASP GLU PHE PRO MET ILE LEU ILE GLY SEQRES 10 A 172 ASN LYS ALA ASP LEU ASP HIS GLN ARG GLN VAL THR GLN SEQRES 11 A 172 GLU GLU GLY GLN GLN LEU ALA ARG GLN LEU LYS VAL THR SEQRES 12 A 172 TYR MET GLU ALA SER ALA LYS ILE ARG MET ASN VAL ASP SEQRES 13 A 172 GLN ALA PHE HIS GLU LEU VAL ARG VAL ILE ARG LYS PHE SEQRES 14 A 172 GLN GLU GLN SEQRES 1 B 172 SER MET GLN GLU LYS TYR ARG LEU VAL VAL VAL GLY GLY SEQRES 2 B 172 GLY GLY VAL GLY LYS SER ALA LEU THR ILE GLN PHE ILE SEQRES 3 B 172 GLN SER TYR PHE VAL THR ASP TYR ASP PRO THR ILE GLU SEQRES 4 B 172 ASP SER TYR THR LYS GLN CYS VAL ILE ASP ASP ARG ALA SEQRES 5 B 172 ALA ARG LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU SEQRES 6 B 172 PHE GLY ALA MET ARG GLU GLN TYR MET ARG THR GLY GLU SEQRES 7 B 172 GLY PHE LEU LEU VAL PHE SER VAL THR ASP ARG GLY SER SEQRES 8 B 172 PHE GLU GLU ILE TYR LYS PHE GLN ARG GLN ILE LEU ARG SEQRES 9 B 172 VAL LYS ASP ARG ASP GLU PHE PRO MET ILE LEU ILE GLY SEQRES 10 B 172 ASN LYS ALA ASP LEU ASP HIS GLN ARG GLN VAL THR GLN SEQRES 11 B 172 GLU GLU GLY GLN GLN LEU ALA ARG GLN LEU LYS VAL THR SEQRES 12 B 172 TYR MET GLU ALA SER ALA LYS ILE ARG MET ASN VAL ASP SEQRES 13 B 172 GLN ALA PHE HIS GLU LEU VAL ARG VAL ILE ARG LYS PHE SEQRES 14 B 172 GLN GLU GLN HET MG A 3 1 HET GDP A 1 28 HET MG B 4 1 HET GDP B 2 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 HOH *290(H2 O) HELIX 1 1 GLY A 26 SER A 37 1 12 HELIX 2 2 GLY A 76 GLY A 86 1 11 HELIX 3 3 ASP A 97 GLU A 103 1 7 HELIX 4 4 GLU A 103 ASP A 116 1 14 HELIX 5 5 THR A 138 LEU A 149 1 12 HELIX 6 6 ASN A 163 GLN A 179 1 17 HELIX 7 7 GLY B 26 SER B 37 1 12 HELIX 8 8 GLN B 81 GLY B 86 1 6 HELIX 9 9 ASP B 97 GLU B 102 1 6 HELIX 10 10 GLU B 103 ASP B 116 1 14 HELIX 11 11 LEU B 131 ARG B 135 5 5 HELIX 12 12 THR B 138 LEU B 149 1 12 HELIX 13 13 ASN B 163 GLU B 180 1 18 SHEET 1 A 6 ASP A 49 ILE A 57 0 SHEET 2 A 6 ARG A 60 ASP A 68 -1 O LEU A 64 N LYS A 53 SHEET 3 A 6 LYS A 14 GLY A 21 1 N LEU A 17 O ASP A 65 SHEET 4 A 6 GLY A 88 SER A 94 1 O LEU A 90 N VAL A 20 SHEET 5 A 6 MET A 122 ASN A 127 1 O ASN A 127 N PHE A 93 SHEET 6 A 6 THR A 152 GLU A 155 1 O THR A 152 N LEU A 124 SHEET 1 B 6 ASP B 49 ILE B 57 0 SHEET 2 B 6 ARG B 60 ASP B 68 -1 O LEU B 64 N LYS B 53 SHEET 3 B 6 LYS B 14 GLY B 21 1 N VAL B 19 O LEU B 67 SHEET 4 B 6 GLY B 88 SER B 94 1 O VAL B 92 N VAL B 20 SHEET 5 B 6 MET B 122 ASN B 127 1 O ILE B 123 N LEU B 91 SHEET 6 B 6 THR B 152 GLU B 155 1 O THR B 152 N LEU B 124 LINK O2B GDP A 1 MG MG A 3 1555 1555 2.08 LINK MG MG A 3 OG SER A 28 1555 1555 2.17 LINK MG MG A 3 O HOH A 324 1555 1555 1.96 LINK MG MG A 3 O HOH A 328 1555 1555 2.10 LINK MG MG A 3 O HOH A 332 1555 1555 2.06 LINK MG MG A 3 O HOH A 333 1555 1555 2.17 LINK O2B GDP B 2 MG MG B 4 1555 1555 1.99 LINK MG MG B 4 OG SER B 28 1555 1555 2.11 LINK MG MG B 4 O HOH B 206 1555 1555 2.09 LINK MG MG B 4 O HOH B 291 1555 1555 2.18 LINK MG MG B 4 O HOH B 299 1555 1555 2.09 LINK MG MG B 4 O HOH B 300 1555 1555 2.10 CISPEP 1 SER A 10 MET A 11 0 1.20 SITE 1 AC1 6 GDP A 1 SER A 28 HOH A 324 HOH A 328 SITE 2 AC1 6 HOH A 332 HOH A 333 SITE 1 AC2 6 GDP B 2 SER B 28 HOH B 206 HOH B 291 SITE 2 AC2 6 HOH B 299 HOH B 300 SITE 1 AC3 26 MG A 3 GLY A 22 GLY A 24 VAL A 25 SITE 2 AC3 26 GLY A 26 LYS A 27 SER A 28 ALA A 29 SITE 3 AC3 26 PHE A 39 VAL A 40 THR A 41 ASN A 127 SITE 4 AC3 26 LYS A 128 ASP A 130 LEU A 131 SER A 157 SITE 5 AC3 26 ALA A 158 LYS A 159 HOH A 275 HOH A 276 SITE 6 AC3 26 HOH A 294 HOH A 313 HOH A 318 HOH A 324 SITE 7 AC3 26 HOH A 332 HOH A 333 SITE 1 AC4 26 MG B 4 GLY B 24 VAL B 25 GLY B 26 SITE 2 AC4 26 LYS B 27 SER B 28 ALA B 29 PHE B 39 SITE 3 AC4 26 VAL B 40 THR B 41 ASN B 127 LYS B 128 SITE 4 AC4 26 ASP B 130 LEU B 131 SER B 157 ALA B 158 SITE 5 AC4 26 LYS B 159 HOH B 217 HOH B 269 HOH B 270 SITE 6 AC4 26 HOH B 271 HOH B 283 HOH B 291 HOH B 295 SITE 7 AC4 26 HOH B 299 HOH B 300 CRYST1 62.191 72.115 82.073 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016079 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012184 0.00000