PDB Short entry for 2EYR HEADER IMMUNE SYSTEM 09-NOV-05 2EYR TITLE A STRUCTURAL BASIS FOR SELECTION AND CROSS-SPECIES REACTIVITY OF THE TITLE 2 SEMI-INVARIANT NKT CELL RECEPTOR IN CD1D/GLYCOLIPID RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NKT12; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NKT12; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS NATURAL KILLER T CELL RECEPTOR, NKT CELL RECEPTOR, NKT12, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.KJER-NIELSEN,N.A.BORG REVDAT 4 13-JUL-11 2EYR 1 VERSN REVDAT 3 24-FEB-09 2EYR 1 VERSN REVDAT 2 04-APR-06 2EYR 1 JRNL REVDAT 1 21-MAR-06 2EYR 0 JRNL AUTH L.KJER-NIELSEN,N.A.BORG,D.G.PELLICCI,T.BEDDOE,L.KOSTENKO, JRNL AUTH 2 C.S.CLEMENTS,N.A.WILLIAMSON,M.J.SMYTH,G.S.BESRA,H.H.REID, JRNL AUTH 3 M.BHARADWAJ,D.I.GODFREY,J.ROSSJOHN,J.MCCLUSKEY JRNL TITL A STRUCTURAL BASIS FOR SELECTION AND CROSS-SPECIES JRNL TITL 2 REACTIVITY OF THE SEMI-INVARIANT NKT CELL RECEPTOR IN JRNL TITL 3 CD1D/GLYCOLIPID RECOGNITION JRNL REF J.EXP.MED. V. 203 661 2006 JRNL REFN ISSN 0022-1007 JRNL PMID 16505140 JRNL DOI 10.1084/JEM.20051777 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 16747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1314 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1177 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.693 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.238 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.058 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3618 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4924 ; 1.052 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 5.549 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;35.191 ;24.318 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 588 ;16.978 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;20.534 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2798 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1357 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2368 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 166 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.072 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2281 ; 0.927 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3616 ; 1.692 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1531 ; 2.348 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1308 ; 3.418 ;10.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8550 9.7780 51.3240 REMARK 3 T TENSOR REMARK 3 T11: -0.1252 T22: 0.0187 REMARK 3 T33: -0.0905 T12: 0.0293 REMARK 3 T13: -0.0214 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 4.1025 L22: 5.3394 REMARK 3 L33: 1.1944 L12: -2.6817 REMARK 3 L13: -0.8044 L23: 0.1669 REMARK 3 S TENSOR REMARK 3 S11: 0.0587 S12: -0.0278 S13: -0.0405 REMARK 3 S21: -0.0753 S22: -0.0710 S23: 0.4299 REMARK 3 S31: -0.0742 S32: -0.1387 S33: 0.0122 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7180 27.2130 42.8190 REMARK 3 T TENSOR REMARK 3 T11: -0.0694 T22: -0.1129 REMARK 3 T33: -0.0540 T12: 0.0538 REMARK 3 T13: 0.0179 T23: -0.0579 REMARK 3 L TENSOR REMARK 3 L11: 11.5177 L22: 1.5166 REMARK 3 L33: 1.6014 L12: -1.6247 REMARK 3 L13: -0.8338 L23: -0.1076 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: -0.5062 S13: 0.4501 REMARK 3 S21: 0.1865 S22: 0.1921 S23: -0.1005 REMARK 3 S31: -0.1292 S32: -0.0500 S33: -0.1472 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5330 -9.2880 46.6950 REMARK 3 T TENSOR REMARK 3 T11: -0.1092 T22: -0.1551 REMARK 3 T33: -0.0100 T12: 0.0682 REMARK 3 T13: 0.0163 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 5.8274 L22: 4.8173 REMARK 3 L33: 3.8093 L12: 0.8799 REMARK 3 L13: 0.6676 L23: -1.8705 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: 0.0530 S13: -0.2691 REMARK 3 S21: 0.3895 S22: 0.0508 S23: -0.5368 REMARK 3 S31: -0.0627 S32: 0.1673 S33: 0.0285 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 123 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7470 2.5030 34.4220 REMARK 3 T TENSOR REMARK 3 T11: -0.1123 T22: -0.0157 REMARK 3 T33: -0.0132 T12: 0.0031 REMARK 3 T13: 0.0805 T23: -0.0497 REMARK 3 L TENSOR REMARK 3 L11: 1.5255 L22: 3.9268 REMARK 3 L33: 0.8178 L12: 1.7969 REMARK 3 L13: -0.1643 L23: -0.7818 REMARK 3 S TENSOR REMARK 3 S11: -0.2898 S12: 0.1013 S13: -0.1226 REMARK 3 S21: -0.2834 S22: 0.1992 S23: -0.3627 REMARK 3 S31: 0.1384 S32: 0.1075 S33: 0.0906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2EYR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-05. REMARK 100 THE RCSB ID CODE IS RCSB035258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18076 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 65.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1MI5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 0.1M CACODYLATE, 0.2M REMARK 280 LITHIUM CHLORIDE, PH 6.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.90150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.90150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.46000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.69450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.46000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.69450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.90150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.46000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.69450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.90150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.46000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.69450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.90150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 266 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 LYS A 0 REMARK 465 SER A 206 REMARK 465 PRO A 207 REMARK 465 GLU A 208 REMARK 465 SER A 209 REMARK 465 SER A 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 32 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 85 109.79 -57.36 REMARK 500 LYS A 132 -7.46 59.12 REMARK 500 SER A 170 -70.09 -61.96 REMARK 500 MET A 171 -4.05 -59.12 REMARK 500 VAL B 52 -30.38 -30.46 REMARK 500 ASN B 53 43.25 -143.71 REMARK 500 SER B 88 -166.47 -178.14 REMARK 500 PRO B 184 0.47 -58.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EYS RELATED DB: PDB REMARK 900 THE SEMI-INVARIANT NKT CELL RECEPTOR IN CD1D/GLYCOLIPID REMARK 900 RECOGNITION REMARK 900 RELATED ID: 2EYT RELATED DB: PDB REMARK 900 THE SEMI-INVARIANT NKT CELL RECEPTOR IN CD1D/GLYCOLIPID REMARK 900 RECOGNITION DBREF 2EYR A 20 210 UNP Q6PIZ8 Q6PIZ8_HUMAN 42 226 DBREF 2EYR B 20 247 UNP Q2YDB4 Q2YDB4_HUMAN 39 263 SEQRES 1 A 210 HIS MET LYS ASN GLN VAL GLU GLN SER PRO GLN SER LEU SEQRES 2 A 210 ILE ILE LEU GLU GLY LYS ASN CYS THR LEU GLN CYS ASN SEQRES 3 A 210 TYR THR VAL SER PRO PHE SER ASN LEU ARG TRP TYR LYS SEQRES 4 A 210 GLN ASP THR GLY ARG GLY PRO VAL SER LEU THR ILE MET SEQRES 5 A 210 THR PHE SER GLU ASN THR LYS SER ASN GLY ARG TYR THR SEQRES 6 A 210 ALA THR LEU ASP ALA ASP THR LYS GLN SER SER LEU HIS SEQRES 7 A 210 ILE THR ALA SER GLN LEU SER ASP SER ALA SER TYR ILE SEQRES 8 A 210 CYS VAL VAL SER ASP ARG GLY SER THR LEU GLY ARG LEU SEQRES 9 A 210 TYR PHE GLY ARG GLY THR GLN LEU THR VAL TRP PRO ASP SEQRES 10 A 210 ILE GLN ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SEQRES 11 A 210 SER LYS SER SER ASP LYS SER VAL CYS LEU PHE THR ASP SEQRES 12 A 210 PHE ASP SER GLN THR ASN VAL SER GLN SER LYS ASP SER SEQRES 13 A 210 ASP VAL TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SEQRES 14 A 210 SER MET ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER SEQRES 15 A 210 ASN LYS SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SEQRES 16 A 210 SER ILE ILE PRO GLU ASP THR PHE PHE PRO SER PRO GLU SEQRES 17 A 210 SER SER SEQRES 1 B 241 ASP ILE TYR GLN THR PRO ARG TYR LEU VAL ILE GLY THR SEQRES 2 B 241 GLY LYS LYS ILE THR LEU GLU CYS SER GLN THR MET GLY SEQRES 3 B 241 HIS ASP LYS MET TYR TRP TYR GLN GLN ASP PRO GLY MET SEQRES 4 B 241 GLU LEU HIS LEU ILE HIS TYR SER TYR GLY VAL ASN SER SEQRES 5 B 241 THR GLU LYS GLY ASP LEU SER SER GLU SER THR VAL SER SEQRES 6 B 241 ARG ILE ARG THR GLU HIS PHE PRO LEU THR LEU GLU SER SEQRES 7 B 241 ALA ARG PRO SER HIS THR SER GLN TYR LEU CYS ALA SER SEQRES 8 B 241 THR SER ARG ARG GLY SER TYR GLU GLN TYR PHE GLY PRO SEQRES 9 B 241 GLY THR ARG LEU THR VAL THR GLU ASP LEU LYS ASN VAL SEQRES 10 B 241 PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA SEQRES 11 B 241 GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU SEQRES 12 B 241 ALA THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP SEQRES 13 B 241 TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR SEQRES 14 B 241 ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SEQRES 15 B 241 SER ARG TYR ALA LEU SER SER ARG LEU ARG VAL SER ALA SEQRES 16 B 241 THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN SEQRES 17 B 241 VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR SEQRES 18 B 241 GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA SEQRES 19 B 241 GLU ALA TRP GLY ARG ALA ASP FORMUL 3 HOH *55(H2 O) HELIX 1 1 GLN A 81 SER A 85 5 5 HELIX 2 2 ARG B 83 THR B 87 5 5 HELIX 3 3 ASP B 119 VAL B 123 5 5 HELIX 4 4 SER B 134 GLN B 142 1 9 HELIX 5 5 ALA B 201 ASN B 206 1 6 SHEET 1 A 5 VAL A 3 SER A 6 0 SHEET 2 A 5 CYS A 18 TYR A 24 -1 O ASN A 23 N GLU A 4 SHEET 3 A 5 GLN A 72 ILE A 77 -1 O ILE A 77 N CYS A 18 SHEET 4 A 5 TYR A 62 ASP A 67 -1 N THR A 63 O HIS A 76 SHEET 5 A 5 THR A 55 ASN A 58 -1 N ASN A 58 O TYR A 62 SHEET 1 B 5 SER A 9 LEU A 13 0 SHEET 2 B 5 THR A 110 TRP A 115 1 O TRP A 115 N ILE A 12 SHEET 3 B 5 ALA A 86 SER A 93 -1 N ALA A 86 O LEU A 112 SHEET 4 B 5 ASN A 31 GLN A 37 -1 N GLN A 37 O SER A 87 SHEET 5 B 5 VAL A 44 THR A 50 -1 O LEU A 46 N TRP A 34 SHEET 1 C 4 SER A 9 LEU A 13 0 SHEET 2 C 4 THR A 110 TRP A 115 1 O TRP A 115 N ILE A 12 SHEET 3 C 4 ALA A 86 SER A 93 -1 N ALA A 86 O LEU A 112 SHEET 4 C 4 LEU A 104 PHE A 106 -1 O TYR A 105 N VAL A 92 SHEET 1 D 4 ALA A 124 LEU A 128 0 SHEET 2 D 4 SER A 137 THR A 142 -1 O LEU A 140 N TYR A 126 SHEET 3 D 4 PHE A 173 SER A 182 -1 O ALA A 180 N CYS A 139 SHEET 4 D 4 VAL A 158 ILE A 160 -1 N TYR A 159 O TRP A 181 SHEET 1 E 4 ALA A 124 LEU A 128 0 SHEET 2 E 4 SER A 137 THR A 142 -1 O LEU A 140 N TYR A 126 SHEET 3 E 4 PHE A 173 SER A 182 -1 O ALA A 180 N CYS A 139 SHEET 4 E 4 CYS A 164 MET A 168 -1 N LEU A 166 O SER A 175 SHEET 1 F 4 ILE B 4 THR B 7 0 SHEET 2 F 4 ILE B 19 GLN B 25 -1 O SER B 24 N TYR B 5 SHEET 3 F 4 LEU B 77 LEU B 79 -1 O LEU B 77 N LEU B 21 SHEET 4 F 4 SER B 65 VAL B 67 -1 N THR B 66 O THR B 78 SHEET 1 G 6 TYR B 10 GLY B 14 0 SHEET 2 G 6 THR B 112 THR B 117 1 O THR B 115 N LEU B 11 SHEET 3 G 6 SER B 88 THR B 95 -1 N TYR B 90 O THR B 112 SHEET 4 G 6 LYS B 31 GLN B 37 -1 N TYR B 35 O LEU B 91 SHEET 5 G 6 HIS B 44 SER B 49 -1 O HIS B 44 N GLN B 36 SHEET 6 G 6 GLU B 56 LYS B 57 -1 O GLU B 56 N TYR B 48 SHEET 1 H 4 TYR B 10 GLY B 14 0 SHEET 2 H 4 THR B 112 THR B 117 1 O THR B 115 N LEU B 11 SHEET 3 H 4 SER B 88 THR B 95 -1 N TYR B 90 O THR B 112 SHEET 4 H 4 GLN B 106 PHE B 108 -1 O TYR B 107 N SER B 94 SHEET 1 I 4 GLU B 127 PHE B 131 0 SHEET 2 I 4 LYS B 143 PHE B 153 -1 O VAL B 147 N PHE B 131 SHEET 3 I 4 TYR B 191 SER B 200 -1 O LEU B 197 N LEU B 146 SHEET 4 I 4 VAL B 173 THR B 175 -1 N CYS B 174 O ARG B 196 SHEET 1 J 4 GLU B 127 PHE B 131 0 SHEET 2 J 4 LYS B 143 PHE B 153 -1 O VAL B 147 N PHE B 131 SHEET 3 J 4 TYR B 191 SER B 200 -1 O LEU B 197 N LEU B 146 SHEET 4 J 4 LEU B 180 LYS B 181 -1 N LEU B 180 O ALA B 192 SHEET 1 K 4 LYS B 167 VAL B 169 0 SHEET 2 K 4 VAL B 158 VAL B 164 -1 N TRP B 162 O VAL B 169 SHEET 3 K 4 HIS B 210 PHE B 217 -1 O ARG B 212 N TRP B 163 SHEET 4 K 4 GLN B 236 TRP B 243 -1 O GLN B 236 N PHE B 217 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.03 SSBOND 2 CYS A 139 CYS A 189 1555 1555 2.03 SSBOND 3 CYS A 164 CYS B 174 1555 1555 2.05 SSBOND 4 CYS B 23 CYS B 92 1555 1555 2.01 SSBOND 5 CYS B 148 CYS B 213 1555 1555 2.03 CISPEP 1 SER A 6 PRO A 7 0 -7.99 CISPEP 2 SER A 27 PRO A 28 0 -4.89 CISPEP 3 THR B 7 PRO B 8 0 -5.04 CISPEP 4 TYR B 154 PRO B 155 0 -1.22 CRYST1 58.920 131.389 117.803 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008489 0.00000