PDB Short entry for 2F37 HEADER MEMBRANE PROTEIN 18-NOV-05 2F37 TITLE CRYSTAL STRUCTURE OF THE ANKYRIN REPEAT DOMAIN OF HUMAN TITLE 2 TRPV2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL COMPND 3 SUBFAMILY V MEMBER 2; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: ANKYRIN REPEAT DOMAIN (RESIDUES 69-319); COMPND 6 SYNONYM: TRPV2, OSM-9-LIKE TRP CHANNEL 2, OTRPC2, COMPND 7 VANILLOID RECEPTOR-LIKE PROTEIN 1, VRL-1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRPV2, VRL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DL41 KEYWDS ANKYRIN REPEAT, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.J.MCCLEVERTY REVDAT 2 24-FEB-09 2F37 1 VERSN REVDAT 1 31-OCT-06 2F37 0 JRNL AUTH C.J.MCCLEVERTY,E.KOESEMA,A.PATAPOUTIAN,S.A.LESLEY, JRNL AUTH 2 A.KREUSCH JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN TRPV2 CHANNEL JRNL TITL 2 ANKYRIN REPEAT DOMAIN. JRNL REF PROTEIN SCI. V. 15 2201 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16882997 JRNL DOI 10.1110/PS.062357206 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 72681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3848 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5266 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 257 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3888 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 389 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : 0.70000 REMARK 3 B12 (A**2) : -0.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3968 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5397 ; 1.345 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 9.259 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;35.436 ;24.670 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;15.504 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;19.245 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 617 ; 0.373 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3011 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2097 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2805 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 365 ; 0.109 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.934 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2507 ; 1.000 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4036 ; 1.674 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1461 ; 2.057 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1351 ; 3.278 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2F37 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB035396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83694 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 1.5 M LI2SO4, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.61833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 177.23667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.92750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 221.54583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.30917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.61833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 177.23667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 221.54583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 132.92750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.30917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 682 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 69 REMARK 465 ASP A 70 REMARK 465 GLN A 202 REMARK 465 SER A 319 REMARK 465 PRO B 69 REMARK 465 SER B 319 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 73 NE CZ NH1 NH2 REMARK 480 ARG A 85 CD NE CZ NH1 NH2 REMARK 480 LYS A 100 CD CE NZ REMARK 480 LYS A 128 CD CE NZ REMARK 480 LYS A 299 CE NZ REMARK 480 GLU B 261 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 591 O HOH A 637 0.23 REMARK 500 O HOH A 604 O HOH A 623 0.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 679 O HOH B 626 8566 0.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 188 N - CA - C ANGL. DEV. = -20.6 DEGREES REMARK 500 ILE A 313 N - CA - C ANGL. DEV. = -24.5 DEGREES REMARK 500 PHE B 208 N - CA - CB ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 126 41.69 -108.86 REMARK 500 ASP A 129 31.60 70.28 REMARK 500 PHE A 208 18.18 -148.42 REMARK 500 GLU A 210 -32.73 71.18 REMARK 500 ARG B 162 127.28 -39.93 REMARK 500 GLU B 210 -29.36 74.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 187 ASN A 188 -141.33 REMARK 500 LYS A 200 GLY A 201 72.68 REMARK 500 HIS A 312 ILE A 313 -116.12 REMARK 500 GLU B 112 GLY B 113 111.04 REMARK 500 LYS B 200 GLY B 201 -147.04 REMARK 500 TYR B 207 PHE B 208 135.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 679 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH B 690 DISTANCE = 5.38 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 DBREF 2F37 A 69 319 UNP Q9Y5S1 TRPV2_HUMAN 69 319 DBREF 2F37 B 69 319 UNP Q9Y5S1 TRPV2_HUMAN 69 319 SEQADV 2F37 MSE A 121 UNP Q9Y5S1 MET 121 MODIFIED RESIDUE SEQADV 2F37 MSE A 254 UNP Q9Y5S1 MET 254 MODIFIED RESIDUE SEQADV 2F37 MSE A 269 UNP Q9Y5S1 MET 269 MODIFIED RESIDUE SEQADV 2F37 MSE B 121 UNP Q9Y5S1 MET 121 MODIFIED RESIDUE SEQADV 2F37 MSE B 254 UNP Q9Y5S1 MET 254 MODIFIED RESIDUE SEQADV 2F37 MSE B 269 UNP Q9Y5S1 MET 269 MODIFIED RESIDUE SEQRES 1 A 251 PRO ASP PRO ASN ARG PHE ASP ARG ASP ARG LEU PHE ASN SEQRES 2 A 251 ALA VAL SER ARG GLY VAL PRO GLU ASP LEU ALA GLY LEU SEQRES 3 A 251 PRO GLU TYR LEU SER LYS THR SER LYS TYR LEU THR ASP SEQRES 4 A 251 SER GLU TYR THR GLU GLY SER THR GLY LYS THR CYS LEU SEQRES 5 A 251 MSE LYS ALA VAL LEU ASN LEU LYS ASP GLY VAL ASN ALA SEQRES 6 A 251 CYS ILE LEU PRO LEU LEU GLN ILE ASP ARG ASP SER GLY SEQRES 7 A 251 ASN PRO GLN PRO LEU VAL ASN ALA GLN CYS THR ASP ASP SEQRES 8 A 251 TYR TYR ARG GLY HIS SER ALA LEU HIS ILE ALA ILE GLU SEQRES 9 A 251 LYS ARG SER LEU GLN CYS VAL LYS LEU LEU VAL GLU ASN SEQRES 10 A 251 GLY ALA ASN VAL HIS ALA ARG ALA CYS GLY ARG PHE PHE SEQRES 11 A 251 GLN LYS GLY GLN GLY THR CYS PHE TYR PHE GLY GLU LEU SEQRES 12 A 251 PRO LEU SER LEU ALA ALA CYS THR LYS GLN TRP ASP VAL SEQRES 13 A 251 VAL SER TYR LEU LEU GLU ASN PRO HIS GLN PRO ALA SER SEQRES 14 A 251 LEU GLN ALA THR ASP SER GLN GLY ASN THR VAL LEU HIS SEQRES 15 A 251 ALA LEU VAL MSE ILE SER ASP ASN SER ALA GLU ASN ILE SEQRES 16 A 251 ALA LEU VAL THR SER MSE TYR ASP GLY LEU LEU GLN ALA SEQRES 17 A 251 GLY ALA ARG LEU CYS PRO THR VAL GLN LEU GLU ASP ILE SEQRES 18 A 251 ARG ASN LEU GLN ASP LEU THR PRO LEU LYS LEU ALA ALA SEQRES 19 A 251 LYS GLU GLY LYS ILE GLU ILE PHE ARG HIS ILE LEU GLN SEQRES 20 A 251 ARG GLU PHE SER SEQRES 1 B 251 PRO ASP PRO ASN ARG PHE ASP ARG ASP ARG LEU PHE ASN SEQRES 2 B 251 ALA VAL SER ARG GLY VAL PRO GLU ASP LEU ALA GLY LEU SEQRES 3 B 251 PRO GLU TYR LEU SER LYS THR SER LYS TYR LEU THR ASP SEQRES 4 B 251 SER GLU TYR THR GLU GLY SER THR GLY LYS THR CYS LEU SEQRES 5 B 251 MSE LYS ALA VAL LEU ASN LEU LYS ASP GLY VAL ASN ALA SEQRES 6 B 251 CYS ILE LEU PRO LEU LEU GLN ILE ASP ARG ASP SER GLY SEQRES 7 B 251 ASN PRO GLN PRO LEU VAL ASN ALA GLN CYS THR ASP ASP SEQRES 8 B 251 TYR TYR ARG GLY HIS SER ALA LEU HIS ILE ALA ILE GLU SEQRES 9 B 251 LYS ARG SER LEU GLN CYS VAL LYS LEU LEU VAL GLU ASN SEQRES 10 B 251 GLY ALA ASN VAL HIS ALA ARG ALA CYS GLY ARG PHE PHE SEQRES 11 B 251 GLN LYS GLY GLN GLY THR CYS PHE TYR PHE GLY GLU LEU SEQRES 12 B 251 PRO LEU SER LEU ALA ALA CYS THR LYS GLN TRP ASP VAL SEQRES 13 B 251 VAL SER TYR LEU LEU GLU ASN PRO HIS GLN PRO ALA SER SEQRES 14 B 251 LEU GLN ALA THR ASP SER GLN GLY ASN THR VAL LEU HIS SEQRES 15 B 251 ALA LEU VAL MSE ILE SER ASP ASN SER ALA GLU ASN ILE SEQRES 16 B 251 ALA LEU VAL THR SER MSE TYR ASP GLY LEU LEU GLN ALA SEQRES 17 B 251 GLY ALA ARG LEU CYS PRO THR VAL GLN LEU GLU ASP ILE SEQRES 18 B 251 ARG ASN LEU GLN ASP LEU THR PRO LEU LYS LEU ALA ALA SEQRES 19 B 251 LYS GLU GLY LYS ILE GLU ILE PHE ARG HIS ILE LEU GLN SEQRES 20 B 251 ARG GLU PHE SER MODRES 2F37 MSE A 121 MET SELENOMETHIONINE MODRES 2F37 MSE A 254 MET SELENOMETHIONINE MODRES 2F37 MSE A 269 MET SELENOMETHIONINE MODRES 2F37 MSE B 121 MET SELENOMETHIONINE MODRES 2F37 MSE B 254 MET SELENOMETHIONINE MODRES 2F37 MSE B 269 MET SELENOMETHIONINE HET MSE A 121 8 HET MSE A 254 8 HET MSE A 269 8 HET MSE B 121 8 HET MSE B 254 8 HET MSE B 269 8 HET SO4 B 501 5 HET SO4 A 502 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *389(H2 O) HELIX 1 1 ASP A 75 ARG A 85 1 11 HELIX 2 2 VAL A 87 ALA A 92 5 6 HELIX 3 3 GLY A 93 SER A 102 1 10 HELIX 4 4 ASP A 107 THR A 111 5 5 HELIX 5 5 THR A 118 ASN A 126 1 9 HELIX 6 6 CYS A 134 GLY A 146 1 13 HELIX 7 7 PRO A 150 ALA A 154 5 5 HELIX 8 8 SER A 165 LYS A 173 1 9 HELIX 9 9 SER A 175 ASN A 185 1 11 HELIX 10 10 GLY A 195 GLN A 199 5 5 HELIX 11 11 LEU A 211 THR A 219 1 9 HELIX 12 12 GLN A 221 ASN A 231 1 11 HELIX 13 13 THR A 247 SER A 256 1 10 HELIX 14 14 SER A 259 CYS A 281 1 23 HELIX 15 15 GLN A 285 ILE A 289 5 5 HELIX 16 16 THR A 296 GLU A 304 1 9 HELIX 17 17 LYS A 306 ARG A 316 1 11 HELIX 18 18 ASP B 75 ARG B 85 1 11 HELIX 19 19 VAL B 87 ALA B 92 5 6 HELIX 20 20 GLY B 93 SER B 102 1 10 HELIX 21 21 ASP B 107 THR B 111 5 5 HELIX 22 22 THR B 118 ASN B 126 1 9 HELIX 23 23 CYS B 134 GLY B 146 1 13 HELIX 24 24 PRO B 150 ALA B 154 5 5 HELIX 25 25 SER B 165 LYS B 173 1 9 HELIX 26 26 SER B 175 ASN B 185 1 11 HELIX 27 27 GLY B 195 GLN B 199 5 5 HELIX 28 28 LEU B 211 THR B 219 1 9 HELIX 29 29 GLN B 221 ASN B 231 1 11 HELIX 30 30 THR B 247 SER B 256 1 10 HELIX 31 31 SER B 259 CYS B 281 1 23 HELIX 32 32 GLN B 285 ILE B 289 5 5 HELIX 33 33 THR B 296 GLU B 304 1 9 HELIX 34 34 LYS B 306 GLU B 317 1 12 LINK C LEU A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N LYS A 122 1555 1555 1.33 LINK C VAL A 253 N MSE A 254 1555 1555 1.33 LINK C MSE A 254 N ILE A 255 1555 1555 1.33 LINK C SER A 268 N MSE A 269 1555 1555 1.34 LINK C MSE A 269 N TYR A 270 1555 1555 1.33 LINK C LEU B 120 N MSE B 121 1555 1555 1.33 LINK C MSE B 121 N LYS B 122 1555 1555 1.33 LINK C VAL B 253 N MSE B 254 1555 1555 1.33 LINK C MSE B 254 N ILE B 255 1555 1555 1.33 LINK C SER B 268 N MSE B 269 1555 1555 1.33 LINK C MSE B 269 N TYR B 270 1555 1555 1.33 SITE 1 AC1 7 ARG B 174 SER B 175 LEU B 176 GLN B 177 SITE 2 AC1 7 HOH B 570 HOH B 676 HOH B 679 SITE 1 AC2 2 ARG A 76 GLY A 113 CRYST1 93.657 93.657 265.855 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010677 0.006165 0.000000 0.00000 SCALE2 0.000000 0.012329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003761 0.00000