PDB Short entry for 2F8A HEADER OXIDOREDUCTASE 02-DEC-05 2F8A TITLE CRYSTAL STRUCTURE OF THE SELENOCYSTEINE TO GLYCINE MUTANT OF HUMAN TITLE 2 GLUTATHIONE PEROXIDASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE PEROXIDASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 12-196; COMPND 5 SYNONYM: GSHPX-1, GPX-1, CELLULAR GLUTATHIONE PEROXIDASE; COMPND 6 EC: 1.11.1.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GPX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET DERIVATIVE KEYWDS THIOREDOXIN FOLD, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.L.KAVANAGH,C.JOHANSSON,C.SMEE,O.GILEADI,F.VON DELFT,J.WEIGELT, AUTHOR 2 M.SUNDSTROM,A.EDWARDS,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 6 30-AUG-23 2F8A 1 REMARK SEQADV REVDAT 5 29-APR-15 2F8A 1 HETSYN REVDAT 4 13-JUL-11 2F8A 1 VERSN REVDAT 3 05-MAY-10 2F8A 1 AUTHOR REVDAT 2 24-FEB-09 2F8A 1 VERSN REVDAT 1 13-DEC-05 2F8A 0 JRNL AUTH K.L.KAVANAGH,C.JOHANSSON,C.SMEE,O.GILEADI,F.VON DELFT, JRNL AUTH 2 U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF THE SELENOCYSTEINE TO GLYCINE MUTANT OF JRNL TITL 2 HUMAN GLUTATHIONE PEROXIDASE 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 79080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1917 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4230 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2860 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 409 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 13.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 0.87000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.048 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.624 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3071 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2156 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4200 ; 1.414 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5254 ; 0.913 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 5.823 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;30.446 ;23.475 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;11.174 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.589 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3499 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 642 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 548 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2308 ; 0.206 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1496 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1588 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 272 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.162 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 64 ; 0.274 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.107 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1988 ; 2.028 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 766 ; 0.499 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3093 ; 2.692 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1243 ; 3.965 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1085 ; 5.887 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9092 16.0845 28.9778 REMARK 3 T TENSOR REMARK 3 T11: -0.0328 T22: -0.0319 REMARK 3 T33: 0.0138 T12: 0.0058 REMARK 3 T13: 0.0060 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.6414 L22: 0.4536 REMARK 3 L33: 0.7722 L12: -0.0506 REMARK 3 L13: -0.1353 L23: -0.1119 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: 0.0163 S13: -0.0403 REMARK 3 S21: -0.0315 S22: -0.0131 S23: -0.1227 REMARK 3 S31: 0.0358 S32: 0.1255 S33: 0.0257 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): -24.6442 22.7288 10.0622 REMARK 3 T TENSOR REMARK 3 T11: 0.0142 T22: -0.0189 REMARK 3 T33: -0.0408 T12: -0.0038 REMARK 3 T13: -0.0214 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.7971 L22: 0.4690 REMARK 3 L33: 0.6990 L12: -0.0174 REMARK 3 L13: -0.1237 L23: -0.0365 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.1601 S13: 0.0384 REMARK 3 S21: -0.1145 S22: 0.0042 S23: 0.0348 REMARK 3 S31: -0.0361 S32: -0.0545 S33: 0.0015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2F8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 70.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.54000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GP1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% TACSIMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.79600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.68800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.79600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.68800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED BY THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY : -X, Y, -Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -39.84034 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 70.67637 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 631 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 VAL A -12 REMARK 465 ASP A -11 REMARK 465 LEU A -10 REMARK 465 GLY A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLN A 196 REMARK 465 MET B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 SER B -15 REMARK 465 SER B -14 REMARK 465 GLY B -13 REMARK 465 VAL B -12 REMARK 465 ASP B -11 REMARK 465 LEU B -10 REMARK 465 GLY B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 GLN B 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 0 CG SD CE REMARK 470 ARG A 20 NH2 REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 GLN B 12 CG CD OE1 NE2 REMARK 470 ARG B 20 CZ NH1 NH2 REMARK 470 LYS B 86 NZ REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA B 502 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CYSTEINE 47 IN THE ACTIVE SITE (SELENO-CYSTEINE ENCODED REMARK 999 BY A UGA CODON) HAS BEEN MUTATED TO A GLYCINE DBREF 2F8A A 12 196 UNP P07203 GPX1_HUMAN 12 196 DBREF 2F8A B 12 196 UNP P07203 GPX1_HUMAN 12 196 SEQADV 2F8A MET A -22 UNP P07203 CLONING ARTIFACT SEQADV 2F8A HIS A -21 UNP P07203 EXPRESSION TAG SEQADV 2F8A HIS A -20 UNP P07203 EXPRESSION TAG SEQADV 2F8A HIS A -19 UNP P07203 EXPRESSION TAG SEQADV 2F8A HIS A -18 UNP P07203 EXPRESSION TAG SEQADV 2F8A HIS A -17 UNP P07203 EXPRESSION TAG SEQADV 2F8A HIS A -16 UNP P07203 EXPRESSION TAG SEQADV 2F8A SER A -15 UNP P07203 CLONING ARTIFACT SEQADV 2F8A SER A -14 UNP P07203 CLONING ARTIFACT SEQADV 2F8A GLY A -13 UNP P07203 CLONING ARTIFACT SEQADV 2F8A VAL A -12 UNP P07203 CLONING ARTIFACT SEQADV 2F8A ASP A -11 UNP P07203 CLONING ARTIFACT SEQADV 2F8A LEU A -10 UNP P07203 CLONING ARTIFACT SEQADV 2F8A GLY A -9 UNP P07203 CLONING ARTIFACT SEQADV 2F8A THR A -8 UNP P07203 CLONING ARTIFACT SEQADV 2F8A GLU A -7 UNP P07203 CLONING ARTIFACT SEQADV 2F8A ASN A -6 UNP P07203 CLONING ARTIFACT SEQADV 2F8A LEU A -5 UNP P07203 CLONING ARTIFACT SEQADV 2F8A TYR A -4 UNP P07203 CLONING ARTIFACT SEQADV 2F8A PHE A -3 UNP P07203 CLONING ARTIFACT SEQADV 2F8A GLN A -2 UNP P07203 CLONING ARTIFACT SEQADV 2F8A SER A -1 UNP P07203 CLONING ARTIFACT SEQADV 2F8A MET A 0 UNP P07203 CLONING ARTIFACT SEQADV 2F8A GLY A 47 UNP P07203 CYS 47 SEE REMARK 999 SEQADV 2F8A MET B -22 UNP P07203 CLONING ARTIFACT SEQADV 2F8A HIS B -21 UNP P07203 EXPRESSION TAG SEQADV 2F8A HIS B -20 UNP P07203 EXPRESSION TAG SEQADV 2F8A HIS B -19 UNP P07203 EXPRESSION TAG SEQADV 2F8A HIS B -18 UNP P07203 EXPRESSION TAG SEQADV 2F8A HIS B -17 UNP P07203 EXPRESSION TAG SEQADV 2F8A HIS B -16 UNP P07203 EXPRESSION TAG SEQADV 2F8A SER B -15 UNP P07203 CLONING ARTIFACT SEQADV 2F8A SER B -14 UNP P07203 CLONING ARTIFACT SEQADV 2F8A GLY B -13 UNP P07203 CLONING ARTIFACT SEQADV 2F8A VAL B -12 UNP P07203 CLONING ARTIFACT SEQADV 2F8A ASP B -11 UNP P07203 CLONING ARTIFACT SEQADV 2F8A LEU B -10 UNP P07203 CLONING ARTIFACT SEQADV 2F8A GLY B -9 UNP P07203 CLONING ARTIFACT SEQADV 2F8A THR B -8 UNP P07203 CLONING ARTIFACT SEQADV 2F8A GLU B -7 UNP P07203 CLONING ARTIFACT SEQADV 2F8A ASN B -6 UNP P07203 CLONING ARTIFACT SEQADV 2F8A LEU B -5 UNP P07203 CLONING ARTIFACT SEQADV 2F8A TYR B -4 UNP P07203 CLONING ARTIFACT SEQADV 2F8A PHE B -3 UNP P07203 CLONING ARTIFACT SEQADV 2F8A GLN B -2 UNP P07203 CLONING ARTIFACT SEQADV 2F8A SER B -1 UNP P07203 CLONING ARTIFACT SEQADV 2F8A MET B 0 UNP P07203 CLONING ARTIFACT SEQADV 2F8A GLY B 47 UNP P07203 CYS 47 SEE REMARK 999 SEQRES 1 A 208 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 208 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLN SER VAL SEQRES 3 A 208 TYR ALA PHE SER ALA ARG PRO LEU ALA GLY GLY GLU PRO SEQRES 4 A 208 VAL SER LEU GLY SER LEU ARG GLY LYS VAL LEU LEU ILE SEQRES 5 A 208 GLU ASN VAL ALA SER LEU GLY GLY THR THR VAL ARG ASP SEQRES 6 A 208 TYR THR GLN MET ASN GLU LEU GLN ARG ARG LEU GLY PRO SEQRES 7 A 208 ARG GLY LEU VAL VAL LEU GLY PHE PRO CYS ASN GLN PHE SEQRES 8 A 208 GLY HIS GLN GLU ASN ALA LYS ASN GLU GLU ILE LEU ASN SEQRES 9 A 208 SER LEU LYS TYR VAL ARG PRO GLY GLY GLY PHE GLU PRO SEQRES 10 A 208 ASN PHE MET LEU PHE GLU LYS CYS GLU VAL ASN GLY ALA SEQRES 11 A 208 GLY ALA HIS PRO LEU PHE ALA PHE LEU ARG GLU ALA LEU SEQRES 12 A 208 PRO ALA PRO SER ASP ASP ALA THR ALA LEU MET THR ASP SEQRES 13 A 208 PRO LYS LEU ILE THR TRP SER PRO VAL CYS ARG ASN ASP SEQRES 14 A 208 VAL ALA TRP ASN PHE GLU LYS PHE LEU VAL GLY PRO ASP SEQRES 15 A 208 GLY VAL PRO LEU ARG ARG TYR SER ARG ARG PHE GLN THR SEQRES 16 A 208 ILE ASP ILE GLU PRO ASP ILE GLU ALA LEU LEU SER GLN SEQRES 1 B 208 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 208 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLN SER VAL SEQRES 3 B 208 TYR ALA PHE SER ALA ARG PRO LEU ALA GLY GLY GLU PRO SEQRES 4 B 208 VAL SER LEU GLY SER LEU ARG GLY LYS VAL LEU LEU ILE SEQRES 5 B 208 GLU ASN VAL ALA SER LEU GLY GLY THR THR VAL ARG ASP SEQRES 6 B 208 TYR THR GLN MET ASN GLU LEU GLN ARG ARG LEU GLY PRO SEQRES 7 B 208 ARG GLY LEU VAL VAL LEU GLY PHE PRO CYS ASN GLN PHE SEQRES 8 B 208 GLY HIS GLN GLU ASN ALA LYS ASN GLU GLU ILE LEU ASN SEQRES 9 B 208 SER LEU LYS TYR VAL ARG PRO GLY GLY GLY PHE GLU PRO SEQRES 10 B 208 ASN PHE MET LEU PHE GLU LYS CYS GLU VAL ASN GLY ALA SEQRES 11 B 208 GLY ALA HIS PRO LEU PHE ALA PHE LEU ARG GLU ALA LEU SEQRES 12 B 208 PRO ALA PRO SER ASP ASP ALA THR ALA LEU MET THR ASP SEQRES 13 B 208 PRO LYS LEU ILE THR TRP SER PRO VAL CYS ARG ASN ASP SEQRES 14 B 208 VAL ALA TRP ASN PHE GLU LYS PHE LEU VAL GLY PRO ASP SEQRES 15 B 208 GLY VAL PRO LEU ARG ARG TYR SER ARG ARG PHE GLN THR SEQRES 16 B 208 ILE ASP ILE GLU PRO ASP ILE GLU ALA LEU LEU SER GLN HET MLA A 501 7 HET MLA B 502 7 HETNAM MLA MALONIC ACID HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 3 MLA 2(C3 H4 O4) FORMUL 5 HOH *409(H2 O) HELIX 1 1 SER A 13 ALA A 16 5 4 HELIX 2 2 GLY A 31 ARG A 34 5 4 HELIX 3 3 THR A 49 GLY A 65 1 17 HELIX 4 4 LYS A 86 GLU A 88 5 3 HELIX 5 5 GLU A 89 VAL A 97 1 9 HELIX 6 6 HIS A 121 LEU A 131 1 11 HELIX 7 7 ASP A 144 ILE A 148 5 5 HELIX 8 8 GLN A 182 ASP A 185 5 4 HELIX 9 9 ILE A 186 SER A 195 1 10 HELIX 10 10 SER B 13 ALA B 16 5 4 HELIX 11 11 GLY B 31 ARG B 34 5 4 HELIX 12 12 THR B 49 GLY B 65 1 17 HELIX 13 13 LYS B 86 GLU B 88 5 3 HELIX 14 14 GLU B 89 VAL B 97 1 9 HELIX 15 15 HIS B 121 LEU B 131 1 11 HELIX 16 16 ASP B 144 ILE B 148 5 5 HELIX 17 17 GLN B 182 ASP B 185 5 4 HELIX 18 18 ILE B 186 SER B 195 1 10 SHEET 1 A 2 SER A 18 ALA A 19 0 SHEET 2 A 2 VAL A 28 SER A 29 -1 O VAL A 28 N ALA A 19 SHEET 1 B 5 MET A 108 LEU A 109 0 SHEET 2 B 5 LEU A 69 PRO A 75 1 N GLY A 73 O MET A 108 SHEET 3 B 5 VAL A 37 VAL A 43 1 N LEU A 39 O LEU A 72 SHEET 4 B 5 LYS A 164 VAL A 167 -1 O PHE A 165 N ILE A 40 SHEET 5 B 5 PRO A 173 TYR A 177 -1 O LEU A 174 N LEU A 166 SHEET 1 C 2 SER B 18 ALA B 19 0 SHEET 2 C 2 VAL B 28 SER B 29 -1 O VAL B 28 N ALA B 19 SHEET 1 D 5 MET B 108 LEU B 109 0 SHEET 2 D 5 LEU B 69 PRO B 75 1 N GLY B 73 O MET B 108 SHEET 3 D 5 VAL B 37 VAL B 43 1 N VAL B 37 O VAL B 70 SHEET 4 D 5 LYS B 164 VAL B 167 -1 O PHE B 165 N ILE B 40 SHEET 5 D 5 PRO B 173 TYR B 177 -1 O ARG B 175 N LEU B 166 CISPEP 1 ARG A 98 PRO A 99 0 -0.95 CISPEP 2 SER A 151 PRO A 152 0 -6.80 CISPEP 3 SER A 151 PRO A 152 0 -7.69 CISPEP 4 ARG B 98 PRO B 99 0 -0.85 CISPEP 5 SER B 151 PRO B 152 0 -8.13 CISPEP 6 SER B 151 PRO B 152 0 -7.48 SITE 1 AC1 12 MET A 142 THR A 143 ASP A 144 LEU A 147 SITE 2 AC1 12 TRP A 160 ARG A 179 HOH A 547 HOH A 567 SITE 3 AC1 12 HOH A 600 HOH A 608 HOH A 637 HOH A 647 SITE 1 AC2 12 MET B 142 THR B 143 ASP B 144 LEU B 147 SITE 2 AC2 12 TRP B 160 ARG B 179 HOH B 541 HOH B 573 SITE 3 AC2 12 HOH B 587 HOH B 600 HOH B 655 HOH B 682 CRYST1 127.592 59.376 81.132 90.00 119.41 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007837 0.000000 0.004418 0.00000 SCALE2 0.000000 0.016842 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014149 0.00000