PDB Short entry for 2F8X HEADER TRANSCRIPTION/DNA 04-DEC-05 2F8X TITLE CRYSTAL STRUCTURE OF ACTIVATED NOTCH, CSL AND MAML ON HES-1 PROMOTER TITLE 2 DNA SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*AP*AP*A) COMPND 3 -3'; COMPND 4 CHAIN: X; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*TP*TP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*TP*AP*AP*C) COMPND 8 -3'; COMPND 9 CHAIN: Y; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS, ISOFORM COMPND 13 4; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 18 CHAIN: K; COMPND 19 FRAGMENT: [CONTAINS: NOTCH 1 EXTRACELLULAR TRUNCATION; NOTCH 1 COMPND 20 INTRACELLULAR DOMAIN]; COMPND 21 SYNONYM: (NOTCH 1) (HN1) (TRANSLOCATION-ASSOCIATED NOTCH PROTEIN TAN- COMPND 22 1); COMPND 23 ENGINEERED: YES; COMPND 24 MOL_ID: 5; COMPND 25 MOLECULE: MASTERMIND-LIKE PROTEIN 1; COMPND 26 CHAIN: M; COMPND 27 SYNONYM: MAM-1; COMPND 28 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PRSETA; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: NOTCH1, TAN1; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 22 MOL_ID: 5; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: MAML1, KIAA0200; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 29 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PDEST15 KEYWDS NOTCH, CSL, MASTERMIND, HES-1, ANKYRIN REPEATS, REL-HOMOLOGY REGION, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAM,P.SLIZ,S.C.BLACKLOW REVDAT 3 30-AUG-23 2F8X 1 SEQADV REVDAT 2 24-FEB-09 2F8X 1 VERSN REVDAT 1 04-APR-06 2F8X 0 JRNL AUTH Y.NAM,P.SLIZ,L.SONG,J.C.ASTER,S.C.BLACKLOW JRNL TITL STRUCTURAL BASIS FOR COOPERATIVITY IN RECRUITMENT OF MAML JRNL TITL 2 COACTIVATORS TO NOTCH TRANSCRIPTION COMPLEXES. JRNL REF CELL(CAMBRIDGE,MASS.) V. 124 973 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 16530044 JRNL DOI 10.1016/J.CELL.2005.12.037 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 72848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 3688 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 590 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5494 REMARK 3 NUCLEIC ACID ATOMS : 732 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.48100 REMARK 3 B22 (A**2) : 12.48100 REMARK 3 B33 (A**2) : -24.96300 REMARK 3 B12 (A**2) : 4.19400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.65 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.68 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.210 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 38.83 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72848 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 44.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRIES: 1TTU AND 2F8Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM HEPES, 6% PEG 3350, AND 5% REMARK 280 ETHYLENE GLYCOL, PH 7.9, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.50800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.50800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.50800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.50800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 60.50800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.50800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Y, C, K, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 8 REMARK 465 GLY C 9 REMARK 465 GLU C 10 REMARK 465 GLY C 435 REMARK 465 HIS C 436 REMARK 465 HIS C 437 REMARK 465 HIS C 438 REMARK 465 HIS C 439 REMARK 465 HIS C 440 REMARK 465 HIS C 441 REMARK 465 GLY K 1872 REMARK 465 MET K 1873 REMARK 465 ASP K 1874 REMARK 465 VAL K 1875 REMARK 465 ASN K 1876 REMARK 465 VAL K 1877 REMARK 465 ARG K 1878 REMARK 465 GLY K 1879 REMARK 465 PRO K 1880 REMARK 465 ASP K 1881 REMARK 465 GLY K 1882 REMARK 465 PHE K 1883 REMARK 465 GLY K 1893 REMARK 465 GLY K 1894 REMARK 465 GLY K 1895 REMARK 465 LEU K 1896 REMARK 465 GLU K 1897 REMARK 465 THR K 1898 REMARK 465 GLY K 1899 REMARK 465 ASN K 1900 REMARK 465 SER K 1901 REMARK 465 GLU K 1902 REMARK 465 GLU K 1903 REMARK 465 GLU K 1904 REMARK 465 GLU K 1905 REMARK 465 ASP K 1906 REMARK 465 ALA K 1907 REMARK 465 PRO K 1908 REMARK 465 GLN K 1917 REMARK 465 GLY K 1918 REMARK 465 ALA K 1919 REMARK 465 ARG K 2121 REMARK 465 SER K 2122 REMARK 465 PRO K 2123 REMARK 465 GLN K 2124 REMARK 465 LEU K 2125 REMARK 465 HIS K 2126 REMARK 465 GLY K 2127 REMARK 465 GLY M 12 REMARK 465 LEU M 13 REMARK 465 PRO M 14 REMARK 465 ARG M 15 REMARK 465 ALA M 71 REMARK 465 GLY M 72 REMARK 465 LYS M 73 REMARK 465 HIS M 74 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL K1910 CG1 CG2 REMARK 470 ILE K1911 CG1 CG2 CD1 REMARK 470 SER K1912 OG REMARK 470 ASP K1913 CG OD1 OD2 REMARK 470 PHE K1914 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE K1915 CG1 CG2 CD1 REMARK 470 TYR K1916 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO C 392 OH TYR C 430 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT X 1 N1 - C1' - C2' ANGL. DEV. = 8.4 DEGREES REMARK 500 DG X 10 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA Y 117 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 28 -76.70 -73.25 REMARK 500 ARG C 29 60.16 79.27 REMARK 500 LEU C 35 128.79 175.48 REMARK 500 GLU C 49 -160.66 -61.14 REMARK 500 LYS C 50 87.63 -178.25 REMARK 500 PRO C 57 108.48 -50.36 REMARK 500 ARG C 75 20.97 -59.43 REMARK 500 ASP C 76 17.40 -143.35 REMARK 500 SER C 83 41.92 -109.10 REMARK 500 ALA C 87 133.12 177.52 REMARK 500 GLN C 96 -138.75 -121.53 REMARK 500 CYS C 109 130.48 -178.26 REMARK 500 ALA C 111 73.26 -111.22 REMARK 500 ASN C 135 38.84 -81.54 REMARK 500 SER C 136 16.37 50.36 REMARK 500 LYS C 152 141.88 162.54 REMARK 500 LYS C 156 -154.07 -73.32 REMARK 500 ASN C 162 64.87 -100.67 REMARK 500 ALA C 163 -150.52 -67.06 REMARK 500 ASP C 164 -14.25 71.39 REMARK 500 THR C 171 -176.74 -60.78 REMARK 500 ARG C 180 17.27 52.32 REMARK 500 SER C 181 29.62 83.63 REMARK 500 THR C 186 119.16 -21.66 REMARK 500 ALA C 198 32.73 -154.43 REMARK 500 ASP C 213 -36.98 -31.61 REMARK 500 ASP C 214 49.11 -82.22 REMARK 500 SER C 216 -140.09 -76.69 REMARK 500 GLU C 217 -95.78 -91.81 REMARK 500 GLU C 219 179.50 -48.77 REMARK 500 ASP C 225 173.88 -45.67 REMARK 500 VAL C 240 -66.67 -104.66 REMARK 500 ARG C 247 144.95 -21.45 REMARK 500 ASP C 254 144.28 176.51 REMARK 500 ASP C 264 141.39 -36.31 REMARK 500 GLU C 280 -82.76 -174.60 REMARK 500 ARG C 281 20.98 -155.46 REMARK 500 TYR C 283 -169.35 -115.45 REMARK 500 SER C 287 63.97 -103.34 REMARK 500 GLN C 288 24.20 38.18 REMARK 500 GLU C 289 -88.59 -150.30 REMARK 500 GLN C 293 174.07 -49.17 REMARK 500 GLN C 295 -27.29 -142.02 REMARK 500 ALA C 296 75.27 61.56 REMARK 500 CYS C 299 -41.47 -154.27 REMARK 500 PRO C 300 70.62 -59.93 REMARK 500 GLU C 302 157.94 171.97 REMARK 500 LYS C 305 56.47 -166.11 REMARK 500 ASP C 310 104.40 -46.91 REMARK 500 GLU C 328 38.62 -82.17 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG X 0 0.06 SIDE CHAIN REMARK 500 DT X 1 0.08 SIDE CHAIN REMARK 500 DA X 12 0.06 SIDE CHAIN REMARK 500 DA X 13 0.05 SIDE CHAIN REMARK 500 DG Y 114 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2F8X C 9 435 UNP Q06330 SUH_HUMAN 23 449 DBREF 2F8X K 1873 2127 UNP P46531 NOTC1_HUMAN 1873 2127 DBREF 2F8X M 13 74 UNP Q92585 MAML1_HUMAN 13 74 DBREF 2F8X X 0 17 PDB 2F8X 2F8X 0 17 DBREF 2F8X Y 101 118 PDB 2F8X 2F8X 101 118 SEQADV 2F8X MET C 8 UNP Q06330 INITIATING METHIONINE SEQADV 2F8X HIS C 436 UNP Q06330 EXPRESSION TAG SEQADV 2F8X HIS C 437 UNP Q06330 EXPRESSION TAG SEQADV 2F8X HIS C 438 UNP Q06330 EXPRESSION TAG SEQADV 2F8X HIS C 439 UNP Q06330 EXPRESSION TAG SEQADV 2F8X HIS C 440 UNP Q06330 EXPRESSION TAG SEQADV 2F8X HIS C 441 UNP Q06330 EXPRESSION TAG SEQADV 2F8X GLY K 1872 UNP P46531 CLONING ARTIFACT SEQADV 2F8X GLY M 12 UNP Q92585 CLONING ARTIFACT SEQRES 1 X 18 DG DT DT DA DC DT DG DT DG DG DG DA DA SEQRES 2 X 18 DA DG DA DA DA SEQRES 1 Y 18 DT DT DT DC DT DT DT DC DC DC DA DC DA SEQRES 2 Y 18 DG DT DA DA DC SEQRES 1 C 434 MET GLY GLU ARG PRO PRO PRO LYS ARG LEU THR ARG GLU SEQRES 2 C 434 ALA MET ARG ASN TYR LEU LYS GLU ARG GLY ASP GLN THR SEQRES 3 C 434 VAL LEU ILE LEU HIS ALA LYS VAL ALA GLN LYS SER TYR SEQRES 4 C 434 GLY ASN GLU LYS ARG PHE PHE CYS PRO PRO PRO CYS VAL SEQRES 5 C 434 TYR LEU MET GLY SER GLY TRP LYS LYS LYS LYS GLU GLN SEQRES 6 C 434 MET GLU ARG ASP GLY CYS SER GLU GLN GLU SER GLN PRO SEQRES 7 C 434 CYS ALA PHE ILE GLY ILE GLY ASN SER ASP GLN GLU MET SEQRES 8 C 434 GLN GLN LEU ASN LEU GLU GLY LYS ASN TYR CYS THR ALA SEQRES 9 C 434 LYS THR LEU TYR ILE SER ASP SER ASP LYS ARG LYS HIS SEQRES 10 C 434 PHE MET LEU SER VAL LYS MET PHE TYR GLY ASN SER ASP SEQRES 11 C 434 ASP ILE GLY VAL PHE LEU SER LYS ARG ILE LYS VAL ILE SEQRES 12 C 434 SER LYS PRO SER LYS LYS LYS GLN SER LEU LYS ASN ALA SEQRES 13 C 434 ASP LEU CYS ILE ALA SER GLY THR LYS VAL ALA LEU PHE SEQRES 14 C 434 ASN ARG LEU ARG SER GLN THR VAL SER THR ARG TYR LEU SEQRES 15 C 434 HIS VAL GLU GLY GLY ASN PHE HIS ALA SER SER GLN GLN SEQRES 16 C 434 TRP GLY ALA PHE PHE ILE HIS LEU LEU ASP ASP ASP GLU SEQRES 17 C 434 SER GLU GLY GLU GLU PHE THR VAL ARG ASP GLY TYR ILE SEQRES 18 C 434 HIS TYR GLY GLN THR VAL LYS LEU VAL CYS SER VAL THR SEQRES 19 C 434 GLY MET ALA LEU PRO ARG LEU ILE ILE ARG LYS VAL ASP SEQRES 20 C 434 LYS GLN THR ALA LEU LEU ASP ALA ASP ASP PRO VAL SER SEQRES 21 C 434 GLN LEU HIS LYS CYS ALA PHE TYR LEU LYS ASP THR GLU SEQRES 22 C 434 ARG MET TYR LEU CYS LEU SER GLN GLU ARG ILE ILE GLN SEQRES 23 C 434 PHE GLN ALA THR PRO CYS PRO LYS GLU PRO ASN LYS GLU SEQRES 24 C 434 MET ILE ASN ASP GLY ALA SER TRP THR ILE ILE SER THR SEQRES 25 C 434 ASP LYS ALA GLU TYR THR PHE TYR GLU GLY MET GLY PRO SEQRES 26 C 434 VAL LEU ALA PRO VAL THR PRO VAL PRO VAL VAL GLU SER SEQRES 27 C 434 LEU GLN LEU ASN GLY GLY GLY ASP VAL ALA MET LEU GLU SEQRES 28 C 434 LEU THR GLY GLN ASN PHE THR PRO ASN LEU ARG VAL TRP SEQRES 29 C 434 PHE GLY ASP VAL GLU ALA GLU THR MET TYR ARG CYS GLY SEQRES 30 C 434 GLU SER MET LEU CYS VAL VAL PRO ASP ILE SER ALA PHE SEQRES 31 C 434 ARG GLU GLY TRP ARG TRP VAL ARG GLN PRO VAL GLN VAL SEQRES 32 C 434 PRO VAL THR LEU VAL ARG ASN ASP GLY ILE ILE TYR SER SEQRES 33 C 434 THR SER LEU THR PHE THR TYR THR PRO GLU PRO GLY HIS SEQRES 34 C 434 HIS HIS HIS HIS HIS SEQRES 1 K 256 GLY MET ASP VAL ASN VAL ARG GLY PRO ASP GLY PHE THR SEQRES 2 K 256 PRO LEU MET ILE ALA SER CYS SER GLY GLY GLY LEU GLU SEQRES 3 K 256 THR GLY ASN SER GLU GLU GLU GLU ASP ALA PRO ALA VAL SEQRES 4 K 256 ILE SER ASP PHE ILE TYR GLN GLY ALA SER LEU HIS ASN SEQRES 5 K 256 GLN THR ASP ARG THR GLY GLU THR ALA LEU HIS LEU ALA SEQRES 6 K 256 ALA ARG TYR SER ARG SER ASP ALA ALA LYS ARG LEU LEU SEQRES 7 K 256 GLU ALA SER ALA ASP ALA ASN ILE GLN ASP ASN MET GLY SEQRES 8 K 256 ARG THR PRO LEU HIS ALA ALA VAL SER ALA ASP ALA GLN SEQRES 9 K 256 GLY VAL PHE GLN ILE LEU ILE ARG ASN ARG ALA THR ASP SEQRES 10 K 256 LEU ASP ALA ARG MET HIS ASP GLY THR THR PRO LEU ILE SEQRES 11 K 256 LEU ALA ALA ARG LEU ALA VAL GLU GLY MET LEU GLU ASP SEQRES 12 K 256 LEU ILE ASN SER HIS ALA ASP VAL ASN ALA VAL ASP ASP SEQRES 13 K 256 LEU GLY LYS SER ALA LEU HIS TRP ALA ALA ALA VAL ASN SEQRES 14 K 256 ASN VAL ASP ALA ALA VAL VAL LEU LEU LYS ASN GLY ALA SEQRES 15 K 256 ASN LYS ASP MET GLN ASN ASN ARG GLU GLU THR PRO LEU SEQRES 16 K 256 PHE LEU ALA ALA ARG GLU GLY SER TYR GLU THR ALA LYS SEQRES 17 K 256 VAL LEU LEU ASP HIS PHE ALA ASN ARG ASP ILE THR ASP SEQRES 18 K 256 HIS MET ASP ARG LEU PRO ARG ASP ILE ALA GLN GLU ARG SEQRES 19 K 256 MET HIS HIS ASP ILE VAL ARG LEU LEU ASP GLU TYR ASN SEQRES 20 K 256 LEU VAL ARG SER PRO GLN LEU HIS GLY SEQRES 1 M 63 GLY LEU PRO ARG HIS SER ALA VAL MET GLU ARG LEU ARG SEQRES 2 M 63 ARG ARG ILE GLU LEU CYS ARG ARG HIS HIS SER THR CYS SEQRES 3 M 63 GLU ALA ARG TYR GLU ALA VAL SER PRO GLU ARG LEU GLU SEQRES 4 M 63 LEU GLU ARG GLN HIS THR PHE ALA LEU HIS GLN ARG CYS SEQRES 5 M 63 ILE GLN ALA LYS ALA LYS ARG ALA GLY LYS HIS FORMUL 6 HOH *10(H2 O) HELIX 1 1 THR C 18 GLU C 28 1 11 HELIX 2 2 SER C 64 ARG C 75 1 12 HELIX 3 3 ARG C 178 GLN C 182 5 5 HELIX 4 4 GLY C 351 VAL C 354 5 4 HELIX 5 5 ASP C 393 ARG C 398 5 6 HELIX 6 6 THR K 1884 SER K 1892 1 9 HELIX 7 7 ALA K 1909 TYR K 1916 1 8 HELIX 8 8 THR K 1931 TYR K 1939 1 9 HELIX 9 9 ARG K 1941 ALA K 1951 1 11 HELIX 10 10 THR K 1964 ALA K 1972 1 9 HELIX 11 11 ALA K 1974 ASN K 1984 1 11 HELIX 12 12 THR K 1998 LEU K 2006 1 9 HELIX 13 13 GLY K 2010 SER K 2018 1 9 HELIX 14 14 SER K 2031 VAL K 2039 1 9 HELIX 15 15 ASN K 2041 ASN K 2051 1 11 HELIX 16 16 THR K 2064 GLY K 2073 1 10 HELIX 17 17 SER K 2074 HIS K 2084 1 11 HELIX 18 18 LEU K 2097 ARG K 2105 1 9 HELIX 19 19 HIS K 2107 TYR K 2117 1 11 HELIX 20 20 HIS M 16 ARG M 70 1 55 SHEET 1 A 2 GLN C 32 THR C 33 0 SHEET 2 A 2 THR C 325 PHE C 326 -1 O PHE C 326 N GLN C 32 SHEET 1 B 2 ILE C 36 ALA C 39 0 SHEET 2 B 2 CYS C 58 VAL C 59 -1 O CYS C 58 N LEU C 37 SHEET 1 C 4 ILE C 36 ALA C 39 0 SHEET 2 C 4 TRP C 314 ALA C 322 -1 O ALA C 322 N ILE C 36 SHEET 3 C 4 LYS C 172 ASN C 177 -1 N ALA C 174 O ILE C 317 SHEET 4 C 4 ARG C 187 TYR C 188 -1 O ARG C 187 N ASN C 177 SHEET 1 D 8 ILE C 36 ALA C 39 0 SHEET 2 D 8 TRP C 314 ALA C 322 -1 O ALA C 322 N ILE C 36 SHEET 3 D 8 LYS C 172 ASN C 177 -1 N ALA C 174 O ILE C 317 SHEET 4 D 8 PHE C 206 LEU C 211 -1 O PHE C 206 N VAL C 173 SHEET 5 D 8 THR C 233 CYS C 238 -1 O VAL C 237 N PHE C 207 SHEET 6 D 8 LEU C 248 ASP C 254 -1 O LEU C 248 N VAL C 234 SHEET 7 D 8 THR C 257 LEU C 259 -1 O THR C 257 N ASP C 254 SHEET 8 D 8 LYS C 305 MET C 307 -1 O GLU C 306 N ALA C 258 SHEET 1 E 7 ILE C 36 ALA C 39 0 SHEET 2 E 7 TRP C 314 ALA C 322 -1 O ALA C 322 N ILE C 36 SHEET 3 E 7 LYS C 172 ASN C 177 -1 N ALA C 174 O ILE C 317 SHEET 4 E 7 PHE C 206 LEU C 211 -1 O PHE C 206 N VAL C 173 SHEET 5 E 7 THR C 233 CYS C 238 -1 O VAL C 237 N PHE C 207 SHEET 6 E 7 LEU C 248 ASP C 254 -1 O LEU C 248 N VAL C 234 SHEET 7 E 7 HIS C 270 TYR C 275 -1 O ALA C 273 N ARG C 251 SHEET 1 F 3 VAL C 41 GLN C 43 0 SHEET 2 F 3 ILE C 147 ILE C 150 1 O ILE C 150 N ALA C 42 SHEET 3 F 3 HIS C 124 PHE C 125 -1 N PHE C 125 O ILE C 147 SHEET 1 G 4 GLN C 99 GLN C 100 0 SHEET 2 G 4 PHE C 88 ILE C 91 -1 N ILE C 89 O GLN C 99 SHEET 3 G 4 LEU C 127 PHE C 132 -1 O SER C 128 N GLY C 90 SHEET 4 G 4 ASP C 138 LEU C 143 -1 O PHE C 142 N VAL C 129 SHEET 1 H 2 HIS C 190 GLU C 192 0 SHEET 2 H 2 ASN C 195 HIS C 197 -1 O ASN C 195 N GLU C 192 SHEET 1 I 2 CYS C 285 LEU C 286 0 SHEET 2 I 2 ILE C 291 ILE C 292 -1 O ILE C 292 N CYS C 285 SHEET 1 J 4 VAL C 342 LEU C 348 0 SHEET 2 J 4 MET C 356 GLN C 362 -1 O THR C 360 N SER C 345 SHEET 3 J 4 SER C 386 VAL C 390 -1 O MET C 387 N LEU C 359 SHEET 4 J 4 THR C 379 CYS C 383 -1 N MET C 380 O LEU C 388 SHEET 1 K 4 VAL C 375 ALA C 377 0 SHEET 2 K 4 LEU C 368 PHE C 372 -1 N PHE C 372 O VAL C 375 SHEET 3 K 4 VAL C 412 ARG C 416 -1 O THR C 413 N TRP C 371 SHEET 4 K 4 ILE C 421 SER C 423 -1 O TYR C 422 N LEU C 414 SHEET 1 L 2 VAL C 408 GLN C 409 0 SHEET 2 L 2 THR C 429 TYR C 430 -1 O TYR C 430 N VAL C 408 CISPEP 1 CYS C 54 PRO C 55 0 -0.09 CISPEP 2 THR C 338 PRO C 339 0 0.02 CRYST1 273.866 273.866 121.016 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003651 0.002108 0.000000 0.00000 SCALE2 0.000000 0.004216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008263 0.00000