PDB Short entry for 2FBJ HEADER IMMUNOGLOBULIN 18-AUG-89 2FBJ TITLE REFINED CRYSTAL STRUCTURE OF THE GALACTAN-BINDING IMMUNOGLOBULIN FAB TITLE 2 J539 AT 1.95-ANGSTROMS RESOLUTION CAVEAT 2FBJ FUC B 3 HAS WRONG CHIRALITY AT ATOM C1 FUC B 3 HAS WRONG CAVEAT 2 2FBJ CHIRALITY AT ATOM C5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGA-KAPPA J539 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: IGA-KAPPA J539 FAB (HEAVY CHAIN); COMPND 6 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR T.N.BHAT,E.A.PADLAN,D.R.DAVIES REVDAT 7 29-JUL-20 2FBJ 1 CAVEAT COMPND REMARK SEQADV REVDAT 7 2 1 HETNAM LINK SITE ATOM REVDAT 6 11-SEP-13 2FBJ 1 SOURCE REVDAT 5 13-JUL-11 2FBJ 1 VERSN REVDAT 4 25-AUG-09 2FBJ 1 SOURCE REVDAT 3 24-FEB-09 2FBJ 1 VERSN REVDAT 2 15-OCT-90 2FBJ 1 FTNOTE REVDAT 1 15-JUL-90 2FBJ 0 SPRSDE 15-JUL-90 2FBJ 1FBJ JRNL AUTH T.N.BHAT,E.A.PADLAN,D.R.DAVIES JRNL TITL REFINED CRYSTAL STRUCTURE OF THE GALACTAN-BINDING JRNL TITL 2 IMMUNOGLOBULIN FAB J539 AT 1.95-ANGSTROMS RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.W.SUH,T.N.BHAT,M.A.NAVIA,G.H.COHEN,D.N.RAO,S.RUDIKOFF, REMARK 1 AUTH 2 D.R.DAVIES REMARK 1 TITL THE GALACTAN-BINDING IMMUNOGLOBULIN FAB J539. AN X-RAY REMARK 1 TITL 2 DIFFRACTION STUDY AT 2.6-ANGSTROMS RESOLUTION REMARK 1 REF PROTEINS V. 1 74 1986 REMARK 1 REFN ISSN 0887-3585 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.A.NAVIA,D.M.SEGAL,E.A.PADLAN,D.R.DAVIES,N.RAO,S.RUDIKOFF, REMARK 1 AUTH 2 M.POTTER REMARK 1 TITL CRYSTAL STRUCTURE OF GALACTAN-BINDING MOUSE IMMUNOGLOBULIN REMARK 1 TITL 2 J539 FAB AT 4.5-ANGSTROMS RESOLUTION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 76 4071 1979 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.500 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3319 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 375 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.009 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.045 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.00900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.67350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.14450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.67350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.00900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.14450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS L 18 O HOH L 372 1.86 REMARK 500 O HOH H 339 O HOH H 404 1.91 REMARK 500 OE2 GLU L 194 O HOH L 382 1.96 REMARK 500 OD1 ASP L 150 O HOH L 404 1.96 REMARK 500 O HOH H 387 O HOH H 388 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 406 O HOH H 402 3545 1.37 REMARK 500 O HOH L 404 O HOH L 405 4545 1.42 REMARK 500 O HOH L 400 O HOH H 404 3545 1.69 REMARK 500 O HOH L 401 O HOH H 403 3545 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL L 3 CA - CB - CG1 ANGL. DEV. = 9.2 DEGREES REMARK 500 GLN L 17 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 VAL L 19 CA - CB - CG2 ANGL. DEV. = 9.3 DEGREES REMARK 500 LYS L 44 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 LEU L 53 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG L 60 CD - NE - CZ ANGL. DEV. = 10.3 DEGREES REMARK 500 THR L 68 CA - CB - CG2 ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG L 107 CA - CB - CG ANGL. DEV. = 24.6 DEGREES REMARK 500 ARG L 107 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 ASP L 109 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP L 109 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 THR L 125 CA - CB - CG2 ANGL. DEV. = 9.2 DEGREES REMARK 500 VAL L 131 CA - CB - CG2 ANGL. DEV. = 9.1 DEGREES REMARK 500 PHE L 134 CB - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 PHE L 134 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP L 142 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP L 142 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP L 150 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLU L 153 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG L 154 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 THR L 163 CA - CB - CG2 ANGL. DEV. = 11.2 DEGREES REMARK 500 ASP L 164 C - N - CA ANGL. DEV. = 24.5 DEGREES REMARK 500 ASP L 169 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP L 169 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 THR L 171 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 LEU L 180 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 GLU L 184 CG - CD - OE1 ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG L 187 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG L 187 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 LYS L 198 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 VAL L 205 CA - CB - CG1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG L 210 CA - CB - CG ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG L 210 CD - NE - CZ ANGL. DEV. = 21.0 DEGREES REMARK 500 ARG L 210 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLU L 212 CA - CB - CG ANGL. DEV. = 20.0 DEGREES REMARK 500 LEU H 4 CA - CB - CG ANGL. DEV. = 18.1 DEGREES REMARK 500 LEU H 5 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 GLU H 6 OE1 - CD - OE2 ANGL. DEV. = -7.8 DEGREES REMARK 500 LEU H 18 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 LYS H 31 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG H 38 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG H 38 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 LEU H 45 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 GLU H 50 CG - CD - OE2 ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG H 72 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP H 73 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP H 73 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASN H 74 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 TYR H 80 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TYR H 80 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 74 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 39 -81.67 -8.80 REMARK 500 ILE L 50 -50.63 70.85 REMARK 500 SER L 55 -65.74 -28.17 REMARK 500 SER L 167 46.37 -106.70 REMARK 500 LYS L 168 -40.68 -131.53 REMARK 500 GLU L 212 -115.23 47.82 REMARK 500 SER H 55 -0.91 57.04 REMARK 500 LYS H 67 -4.60 -140.79 REMARK 500 ASP H 73 -73.55 -99.86 REMARK 500 ASN H 74 -43.96 110.81 REMARK 500 PRO H 133 -34.19 -38.72 REMARK 500 ALA H 134 71.77 -111.52 REMARK 500 LEU H 135 -24.69 -162.85 REMARK 500 SER H 136 -158.54 -164.10 REMARK 500 SER H 137 155.55 123.54 REMARK 500 ASP H 138 91.74 42.65 REMARK 500 ASP H 148 75.28 49.97 REMARK 500 ALA H 176 -144.84 -76.75 REMARK 500 ASP H 207 -125.53 52.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 226 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU H 196 OE2 REMARK 620 2 GLU H 196 OE1 51.8 REMARK 620 N 1 DBREF 2FBJ L 1 212 GB 437099 AAC28911 1 214 DBREF 2FBJ H 1 119 UNP P01810 HV40_MOUSE 1 119 SEQADV 2FBJ ILE L 2 GB 437099 LEU 2 CONFLICT SEQADV 2FBJ THR L 11 GB 437099 MET 11 CONFLICT SEQADV 2FBJ ALA L 12 GB 437099 SER 12 CONFLICT SEQADV 2FBJ LEU L 15 GB 437099 PRO 15 CONFLICT SEQADV 2FBJ L GB 437099 ARG 32 DELETION SEQADV 2FBJ L GB 437099 PHE 33 DELETION SEQADV 2FBJ THR L 41 GB 437099 ALA 43 CONFLICT SEQADV 2FBJ PRO L 45 GB 437099 LEU 47 CONFLICT SEQADV 2FBJ GLU L 49 GB 437099 ASP 51 CONFLICT SEQADV 2FBJ ILE L 50 GB 437099 THR 52 CONFLICT SEQADV 2FBJ SER L 55 GB 437099 PRO 57 CONFLICT SEQADV 2FBJ ASN L 75 GB 437099 SER 77 CONFLICT SEQADV 2FBJ THR L 76 GB 437099 SER 78 CONFLICT SEQADV 2FBJ ILE L 84 GB 437099 SER 86 CONFLICT SEQADV 2FBJ TYR L 86 GB 437099 PHE 88 CONFLICT SEQADV 2FBJ GLN L 88 GB 437099 HIS 90 CONFLICT SEQADV 2FBJ L GB 437099 SER 93 DELETION SEQADV 2FBJ THR L 91 GB 437099 SER 94 CONFLICT SEQADV 2FBJ ILE L 95 GB 437099 INSERTION SEQRES 1 L 213 GLU ILE VAL LEU THR GLN SER PRO ALA ILE THR ALA ALA SEQRES 2 L 213 SER LEU GLY GLN LYS VAL THR ILE THR CYS SER ALA SER SEQRES 3 L 213 SER SER VAL SER SER LEU HIS TRP TYR GLN GLN LYS SER SEQRES 4 L 213 GLY THR SER PRO LYS PRO TRP ILE TYR GLU ILE SER LYS SEQRES 5 L 213 LEU ALA SER GLY VAL PRO ALA ARG PHE SER GLY SER GLY SEQRES 6 L 213 SER GLY THR SER TYR SER LEU THR ILE ASN THR MET GLU SEQRES 7 L 213 ALA GLU ASP ALA ALA ILE TYR TYR CYS GLN GLN TRP THR SEQRES 8 L 213 TYR PRO LEU ILE THR PHE GLY ALA GLY THR LYS LEU GLU SEQRES 9 L 213 LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE SEQRES 10 L 213 PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER SEQRES 11 L 213 VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE SEQRES 12 L 213 ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN SEQRES 13 L 213 GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SEQRES 14 L 213 SER THR TYR SER MET SER SER THR LEU THR LEU THR LYS SEQRES 15 L 213 ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA SEQRES 16 L 213 THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE SEQRES 17 L 213 ASN ARG ASN GLU CYS SEQRES 1 H 220 GLU VAL LYS LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 220 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 220 PHE ASP PHE SER LYS TYR TRP MET SER TRP VAL ARG GLN SEQRES 4 H 220 ALA PRO GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE HIS SEQRES 5 H 220 PRO ASP SER GLY THR ILE ASN TYR THR PRO SER LEU LYS SEQRES 6 H 220 ASP LYS PHE ILE ILE SER ARG ASP ASN ALA LYS ASN SER SEQRES 7 H 220 LEU TYR LEU GLN MET SER LYS VAL ARG SER GLU ASP THR SEQRES 8 H 220 ALA LEU TYR TYR CYS ALA ARG LEU HIS TYR TYR GLY TYR SEQRES 9 H 220 ASN ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 220 ALA GLU SER ALA ARG ASN PRO THR ILE TYR PRO LEU THR SEQRES 11 H 220 LEU PRO PRO ALA LEU SER SER ASP PRO VAL ILE ILE GLY SEQRES 12 H 220 CYS LEU ILE HIS ASP TYR PHE PRO SER GLY THR MET ASN SEQRES 13 H 220 VAL THR TRP GLY LYS SER GLY LYS ASP ILE THR THR VAL SEQRES 14 H 220 ASN PHE PRO PRO ALA LEU ALA SER GLY GLY ARG TYR THR SEQRES 15 H 220 MET SER ASN GLN LEU THR LEU PRO ALA VAL GLU CYS PRO SEQRES 16 H 220 GLU GLY GLU SER VAL LYS CYS SER VAL GLN HIS ASP SER SEQRES 17 H 220 ASN PRO VAL GLN GLU LEU ASP VAL ASN CYS SER GLY MODRES 2FBJ ASN H 59 ASN GLYCOSYLATION SITE MODRES 2FBJ ASN H 156 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET ZN H 226 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 4 FUC C6 H12 O5 FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *375(H2 O) HELIX 1 1 GLU L 78 ALA L 82 5 5 HELIX 2 2 SER L 120 SER L 126 1 7 HELIX 3 3 LYS L 182 ARG L 187 1 6 HELIX 4 4 ASP H 28 TYR H 32 5 5 HELIX 5 5 ARG H 87 THR H 91 5 5 HELIX 6 6 PRO H 190 CYS H 194 5 5 SHEET 1 A 4 LEU L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 N THR L 22 O SER L 7 SHEET 3 A 4 SER L 69 ILE L 74 -1 O TYR L 70 N CYS L 23 SHEET 4 A 4 PHE L 61 SER L 66 -1 O SER L 62 N THR L 73 SHEET 1 B 5 LYS L 52 LEU L 53 0 SHEET 2 B 5 LYS L 44 TYR L 48 -1 N TYR L 48 O LYS L 52 SHEET 3 B 5 SER L 31 GLN L 37 -1 N TRP L 34 O ILE L 47 SHEET 4 B 5 ALA L 83 THR L 91 -1 O ILE L 84 N GLN L 37 SHEET 5 B 5 LEU L 94 PHE L 97 -1 N LEU L 94 O THR L 91 SHEET 1 C 6 LYS L 52 LEU L 53 0 SHEET 2 C 6 LYS L 44 TYR L 48 -1 N TYR L 48 O LYS L 52 SHEET 3 C 6 SER L 31 GLN L 37 -1 N TRP L 34 O ILE L 47 SHEET 4 C 6 ALA L 83 THR L 91 -1 O ILE L 84 N GLN L 37 SHEET 5 C 6 THR L 101 LYS L 106 -1 O THR L 101 N TYR L 85 SHEET 6 C 6 ILE L 10 SER L 14 1 N THR L 11 O LYS L 102 SHEET 1 D 4 THR L 113 PHE L 117 0 SHEET 2 D 4 GLY L 128 PHE L 138 -1 O VAL L 132 N PHE L 117 SHEET 3 D 4 TYR L 172 THR L 181 -1 O TYR L 172 N PHE L 138 SHEET 4 D 4 VAL L 158 TRP L 162 -1 N LEU L 159 O THR L 177 SHEET 1 E 4 SER L 152 ARG L 154 0 SHEET 2 E 4 ASN L 144 ILE L 149 -1 O TRP L 147 N ARG L 154 SHEET 3 E 4 SER L 190 THR L 196 -1 O THR L 192 N LYS L 148 SHEET 4 E 4 ILE L 204 ASN L 209 -1 N ILE L 204 O ALA L 195 SHEET 1 F 4 LYS H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 N SER H 21 O SER H 7 SHEET 3 F 4 SER H 78 MET H 83 -1 O LEU H 79 N CYS H 22 SHEET 4 F 4 PHE H 68 ARG H 72 -1 O ILE H 69 N GLN H 82 SHEET 1 G 5 ILE H 58 TYR H 60 0 SHEET 2 G 5 LEU H 45 ILE H 51 -1 N GLU H 50 O ASN H 59 SHEET 3 G 5 MET H 34 GLN H 39 -1 O MET H 34 N ILE H 51 SHEET 4 G 5 ALA H 92 HIS H 100 -1 N LEU H 93 O GLN H 39 SHEET 5 G 5 TYR H 104 TRP H 108 -1 O TYR H 104 N HIS H 100 SHEET 1 H 6 ILE H 58 TYR H 60 0 SHEET 2 H 6 LEU H 45 ILE H 51 -1 N GLU H 50 O ASN H 59 SHEET 3 H 6 MET H 34 GLN H 39 -1 O MET H 34 N ILE H 51 SHEET 4 H 6 ALA H 92 HIS H 100 -1 N LEU H 93 O GLN H 39 SHEET 5 H 6 THR H 112 VAL H 116 -1 O THR H 112 N TYR H 94 SHEET 6 H 6 GLY H 10 VAL H 12 1 O GLY H 10 N THR H 115 SHEET 1 I 4 THR H 125 LEU H 129 0 SHEET 2 I 4 VAL H 140 TYR H 149 -1 N GLY H 143 O LEU H 129 SHEET 3 I 4 TYR H 181 LEU H 189 -1 N TYR H 181 O TYR H 149 SHEET 4 I 4 THR H 167 ASN H 170 -1 O THR H 167 N THR H 188 SHEET 1 J 4 THR H 125 LEU H 129 0 SHEET 2 J 4 VAL H 140 TYR H 149 -1 N GLY H 143 O LEU H 129 SHEET 3 J 4 TYR H 181 LEU H 189 -1 N TYR H 181 O TYR H 149 SHEET 4 J 4 ALA H 174 LEU H 175 -1 N ALA H 174 O THR H 182 SHEET 1 K 3 MET H 155 TRP H 159 0 SHEET 2 K 3 SER H 199 HIS H 206 -1 N SER H 203 O THR H 158 SHEET 3 K 3 GLN H 212 ASN H 217 -1 N GLN H 212 O VAL H 204 SSBOND 1 CYS L 23 CYS L 87 1555 1555 2.02 SSBOND 2 CYS L 133 CYS L 193 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.02 SSBOND 4 CYS H 144 CYS H 202 1555 1555 2.03 SSBOND 5 CYS H 194 CYS H 218 1555 1555 2.02 LINK ND2 ASN H 59 C1 NAG A 1 1555 1555 1.43 LINK ND2 ASN H 156 C1 NAG B 1 1555 1555 1.46 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.47 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.43 LINK OE2 GLU H 196 ZN ZN H 226 2455 1555 2.54 LINK OE1 GLU H 196 ZN ZN H 226 2455 1555 2.44 CISPEP 1 SER L 7 PRO L 8 0 -5.99 CISPEP 2 TYR L 92 PRO L 93 0 4.02 CISPEP 3 TYR L 139 PRO L 140 0 -2.06 CISPEP 4 ASP H 138 PRO H 139 0 -2.09 CISPEP 5 PHE H 150 PRO H 151 0 -4.60 CRYST1 54.018 74.289 131.347 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018512 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007613 0.00000