PDB Short entry for 2FC8 HEADER RNA BINDING PROTEIN 12-DEC-05 2FC8 TITLE SOLUTION STRUCTURE OF THE RRM_1 DOMAIN OF NCL PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NCL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM_1 DOMAIN, RESIDUES 8-96; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050516-05 KEYWDS STRUCTURE GENOMICS, RRM_1 DOMAIN, NCL PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2FC8 1 REMARK SEQADV REVDAT 2 24-JUN-08 2FC8 1 SOURCE REMARK DBREF SEQADV REVDAT 2 2 1 VERSN REVDAT 1 12-JUN-06 2FC8 0 JRNL AUTH W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RRM_1 DOMAIN OF NCL PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FC8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035706. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90 % REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 103.67 -41.51 REMARK 500 1 ASN A 9 33.65 72.68 REMARK 500 1 THR A 27 115.32 -38.83 REMARK 500 1 SER A 35 -37.06 -35.78 REMARK 500 1 ASP A 37 97.92 -69.20 REMARK 500 1 SER A 39 165.58 -49.44 REMARK 500 1 ALA A 89 91.01 -57.71 REMARK 500 1 PRO A 91 -171.41 -69.73 REMARK 500 1 LYS A 92 -55.65 -134.86 REMARK 500 2 PRO A 14 -172.98 -69.75 REMARK 500 2 THR A 27 114.95 -34.86 REMARK 500 2 SER A 35 -30.98 -38.51 REMARK 500 2 ASP A 37 83.39 -69.37 REMARK 500 2 SER A 39 161.04 -47.57 REMARK 500 2 SER A 53 103.90 -58.56 REMARK 500 2 ALA A 89 144.48 -34.30 REMARK 500 3 PRO A 14 -168.74 -69.77 REMARK 500 3 THR A 27 110.76 -39.92 REMARK 500 3 SER A 35 -31.92 -35.27 REMARK 500 3 SER A 39 164.32 -42.95 REMARK 500 3 SER A 53 108.01 -53.56 REMARK 500 3 TRP A 88 102.39 -57.56 REMARK 500 3 ALA A 89 105.34 -33.92 REMARK 500 3 PRO A 99 97.26 -69.74 REMARK 500 4 SER A 6 77.15 -100.23 REMARK 500 4 PRO A 14 -165.99 -69.76 REMARK 500 4 THR A 27 120.17 -35.60 REMARK 500 4 SER A 35 -34.80 -38.47 REMARK 500 4 ASP A 37 90.56 -65.42 REMARK 500 4 SER A 39 162.57 -46.29 REMARK 500 4 ALA A 89 97.87 -55.21 REMARK 500 4 LYS A 92 104.81 -44.44 REMARK 500 4 GLU A 94 40.04 -108.78 REMARK 500 4 SER A 100 157.26 -45.89 REMARK 500 5 PRO A 8 2.89 -69.82 REMARK 500 5 ARG A 11 50.70 35.07 REMARK 500 5 THR A 27 116.24 -38.88 REMARK 500 5 SER A 35 -36.05 -37.60 REMARK 500 5 ASP A 37 99.28 -67.23 REMARK 500 5 SER A 39 167.04 -44.04 REMARK 500 5 ALA A 89 162.48 -41.15 REMARK 500 5 PRO A 91 99.40 -69.76 REMARK 500 5 PRO A 99 -179.22 -69.77 REMARK 500 6 ALA A 10 39.22 -89.86 REMARK 500 6 SER A 12 165.82 -43.63 REMARK 500 6 GLN A 13 142.30 -37.28 REMARK 500 6 PRO A 14 -166.07 -69.82 REMARK 500 6 SER A 39 159.43 -41.70 REMARK 500 6 SER A 53 107.49 -56.24 REMARK 500 7 ASN A 9 38.55 -83.84 REMARK 500 REMARK 500 THIS ENTRY HAS 152 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FC9 RELATED DB: PDB REMARK 900 THE DIFFERENT FRAGMENT OF THE SAME PROTEIN REMARK 900 RELATED ID: HSI002005757.2 RELATED DB: TARGETDB DBREF 2FC8 A 8 96 UNP Q9BQ02 Q9BQ02_HUMAN 336 424 SEQADV 2FC8 GLY A 1 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 2 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 3 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 GLY A 4 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 5 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 6 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 GLY A 7 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 97 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 GLY A 98 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 PRO A 99 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 100 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 101 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 GLY A 102 UNP Q9BQ02 EXPRESSION TAG SEQRES 1 A 102 GLY SER SER GLY SER SER GLY PRO ASN ALA ARG SER GLN SEQRES 2 A 102 PRO SER LYS THR LEU PHE VAL LYS GLY LEU SER GLU ASP SEQRES 3 A 102 THR THR GLU GLU THR LEU LYS GLU SER PHE ASP GLY SER SEQRES 4 A 102 VAL ARG ALA ARG ILE VAL THR ASP ARG GLU THR GLY SER SEQRES 5 A 102 SER LYS GLY PHE GLY PHE VAL ASP PHE ASN SER GLU GLU SEQRES 6 A 102 ASP ALA LYS ALA ALA LYS GLU ALA MET GLU ASP GLY GLU SEQRES 7 A 102 ILE ASP GLY ASN LYS VAL THR LEU ASP TRP ALA LYS PRO SEQRES 8 A 102 LYS GLY GLU GLY GLY SER GLY PRO SER SER GLY HELIX 1 1 GLU A 29 SER A 35 1 7 HELIX 2 2 GLU A 64 MET A 74 1 11 SHEET 1 A 4 ARG A 41 VAL A 45 0 SHEET 2 A 4 PHE A 56 ASP A 60 -1 O PHE A 58 N ARG A 43 SHEET 3 A 4 LEU A 18 LYS A 21 -1 N VAL A 20 O GLY A 57 SHEET 4 A 4 THR A 85 TRP A 88 -1 O ASP A 87 N PHE A 19 SHEET 1 B 2 GLU A 78 ILE A 79 0 SHEET 2 B 2 ASN A 82 LYS A 83 -1 O ASN A 82 N ILE A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000