PDB Short entry for 2FCC HEADER HYDROLASE 12-DEC-05 2FCC TITLE CRYSTAL STRUCTURE OF T4 PYRIMIDINE DIMER GLYCOSYLASE (T4-PDG) TITLE 2 COVALENTLY COMPLEXED WITH A DNA SUBSTRATE CONTAINING ABASIC SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'); COMPND 3 CHAIN: C, E; COMPND 4 FRAGMENT: DS OLIGONUCLEOTIDE CONTAINING AP SITE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU) COMPND 8 P*GP*G)-3'); COMPND 9 CHAIN: D, F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ENDONUCLEASE V; COMPND 13 CHAIN: A, B; COMPND 14 FRAGMENT: T4-PDG; COMPND 15 EC: 3.1.25.1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED.; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: CHEMICALLY SYNTHESIZED.; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 9 ORGANISM_TAXID: 10665; SOURCE 10 GENE: DENV; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: AB2480 KEYWDS T4-PDG, PYRIMIDINE DIMER, DNA REPAIR, ENDONUCLEASE, ENZYME-DNA KEYWDS 2 COMPLEX, COVALENT INTERMEDIATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GOLAN,D.O.ZHARKOV,A.S.FERNANDES,M.L.DODSON,A.K.MCCULLOUGH, AUTHOR 2 A.P.GROLLMAN,R.S.LLOYD,G.SHOHAM REVDAT 4 30-AUG-23 2FCC 1 REMARK LINK REVDAT 3 13-JUL-11 2FCC 1 VERSN REVDAT 2 24-FEB-09 2FCC 1 VERSN REVDAT 1 03-OCT-06 2FCC 0 JRNL AUTH G.GOLAN,D.O.ZHARKOV,A.P.GROLLMAN,M.L.DODSON,A.K.MCCULLOUGH, JRNL AUTH 2 R.S.LLOYD,G.SHOHAM JRNL TITL STRUCTURE OF T4 PYRIMIDINE DIMER GLYCOSYLASE IN A REDUCED JRNL TITL 2 IMINE COVALENT COMPLEX WITH ABASIC SITE-CONTAINING DNA. JRNL REF J.MOL.BIOL. V. 362 241 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16916523 JRNL DOI 10.1016/J.JMB.2006.06.059 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 464806.420 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 81403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4032 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11988 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 602 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2254 REMARK 3 NUCLEIC ACID ATOMS : 1036 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.36000 REMARK 3 B22 (A**2) : 2.36000 REMARK 3 B33 (A**2) : -4.72000 REMARK 3 B12 (A**2) : 0.60000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.050 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.210 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.950 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.120 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.190 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 26.15 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA-PED.PARAM REMARK 3 PARAMETER FILE 3 : GOL.PAR REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA-PED.TOP REMARK 3 TOPOLOGY FILE 3 : GOL.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FCC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9188 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81403 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1VAS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M (NH4)2SO4 AND 0.1 M SODIUM CITRATE REMARK 280 BUFFER (PH 6.4), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.61833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.23667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.61833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.23667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.61833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 67.23667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.61833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 67.23667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N2 DG F 214 N2 DG F 214 12565 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 45 -84.20 -63.85 REMARK 500 ILE A 46 93.65 73.94 REMARK 500 ASN A 84 57.39 -92.23 REMARK 500 ARG A 101 55.83 -98.29 REMARK 500 ARG A 125 57.04 -147.10 REMARK 500 ASN B 37 20.03 -151.88 REMARK 500 TYR B 104 136.41 -172.84 REMARK 500 ARG B 125 54.12 -155.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA C 206 0.08 SIDE CHAIN REMARK 500 DG E 205 0.07 SIDE CHAIN REMARK 500 DA E 206 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 DBREF 2FCC A 2 138 UNP P04418 END5_BPT4 2 138 DBREF 2FCC B 2 138 UNP P04418 END5_BPT4 2 138 DBREF 2FCC C 201 213 PDB 2FCC 2FCC 201 213 DBREF 2FCC D 214 226 PDB 2FCC 2FCC 214 226 DBREF 2FCC E 201 213 PDB 2FCC 2FCC 201 213 DBREF 2FCC F 214 226 PDB 2FCC 2FCC 214 226 SEQRES 1 C 13 DC DC DA DG DG DA PED DG DA DA DG DC DC SEQRES 1 D 13 DG DG DC BRU BRU DC DA BRU DC DC BRU DG DG SEQRES 1 E 13 DC DC DA DG DG DA PED DG DA DA DG DC DC SEQRES 1 F 13 DG DG DC BRU BRU DC DA BRU DC DC BRU DG DG SEQRES 1 A 137 THR ARG ILE ASN LEU THR LEU VAL SER GLU LEU ALA ASP SEQRES 2 A 137 GLN HIS LEU MET ALA GLU TYR ARG GLU LEU PRO ARG VAL SEQRES 3 A 137 PHE GLY ALA VAL ARG LYS HIS VAL ALA ASN GLY LYS ARG SEQRES 4 A 137 VAL ARG ASP PHE LYS ILE SER PRO THR PHE ILE LEU GLY SEQRES 5 A 137 ALA GLY HIS VAL THR PHE PHE TYR ASP LYS LEU GLU PHE SEQRES 6 A 137 LEU ARG LYS ARG GLN ILE GLU LEU ILE ALA GLU CYS LEU SEQRES 7 A 137 LYS ARG GLY PHE ASN ILE LYS ASP THR THR VAL GLN ASP SEQRES 8 A 137 ILE SER ASP ILE PRO GLN GLU PHE ARG GLY ASP TYR ILE SEQRES 9 A 137 PRO HIS GLU ALA SER ILE ALA ILE SER GLN ALA ARG LEU SEQRES 10 A 137 ASP GLU LYS ILE ALA GLN ARG PRO THR TRP TYR LYS TYR SEQRES 11 A 137 TYR GLY LYS ALA ILE TYR ALA SEQRES 1 B 137 THR ARG ILE ASN LEU THR LEU VAL SER GLU LEU ALA ASP SEQRES 2 B 137 GLN HIS LEU MET ALA GLU TYR ARG GLU LEU PRO ARG VAL SEQRES 3 B 137 PHE GLY ALA VAL ARG LYS HIS VAL ALA ASN GLY LYS ARG SEQRES 4 B 137 VAL ARG ASP PHE LYS ILE SER PRO THR PHE ILE LEU GLY SEQRES 5 B 137 ALA GLY HIS VAL THR PHE PHE TYR ASP LYS LEU GLU PHE SEQRES 6 B 137 LEU ARG LYS ARG GLN ILE GLU LEU ILE ALA GLU CYS LEU SEQRES 7 B 137 LYS ARG GLY PHE ASN ILE LYS ASP THR THR VAL GLN ASP SEQRES 8 B 137 ILE SER ASP ILE PRO GLN GLU PHE ARG GLY ASP TYR ILE SEQRES 9 B 137 PRO HIS GLU ALA SER ILE ALA ILE SER GLN ALA ARG LEU SEQRES 10 B 137 ASP GLU LYS ILE ALA GLN ARG PRO THR TRP TYR LYS TYR SEQRES 11 B 137 TYR GLY LYS ALA ILE TYR ALA MODRES 2FCC BRU D 217 DU MODRES 2FCC BRU D 218 DU MODRES 2FCC BRU D 221 DU MODRES 2FCC BRU D 224 DU MODRES 2FCC BRU F 217 DU MODRES 2FCC BRU F 218 DU MODRES 2FCC BRU F 221 DU MODRES 2FCC BRU F 224 DU HET PED C 207 11 HET BRU D 217 20 HET BRU D 218 20 HET BRU D 221 20 HET BRU D 224 20 HET PED E 207 11 HET BRU F 217 20 HET BRU F 218 20 HET BRU F 221 20 HET BRU F 224 20 HET SO4 A 501 5 HET SO4 A 502 5 HET GOL A 602 6 HET GOL B 601 6 HETNAM PED PENTANE-3,4-DIOL-5-PHOSPHATE HETNAM BRU 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN PED OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PED 2(C5 H13 O6 P) FORMUL 2 BRU 8(C9 H12 BR N2 O8 P) FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 11 HOH *183(H2 O) HELIX 1 1 LEU A 8 LEU A 12 5 5 HELIX 2 2 ALA A 13 LEU A 24 1 12 HELIX 3 3 LEU A 24 ASN A 37 1 14 HELIX 4 4 ARG A 40 PHE A 44 5 5 HELIX 5 5 VAL A 57 TYR A 61 5 5 HELIX 6 6 LYS A 63 ARG A 81 1 19 HELIX 7 7 PRO A 97 ARG A 101 5 5 HELIX 8 8 HIS A 107 ALA A 123 1 17 HELIX 9 9 LEU B 8 LEU B 12 5 5 HELIX 10 10 ALA B 13 LEU B 24 1 12 HELIX 11 11 LEU B 24 VAL B 35 1 12 HELIX 12 12 ALA B 36 GLY B 38 5 3 HELIX 13 13 ARG B 40 PHE B 44 5 5 HELIX 14 14 VAL B 57 TYR B 61 5 5 HELIX 15 15 LYS B 63 ARG B 81 1 19 HELIX 16 16 HIS B 107 ALA B 123 1 17 LINK O3' DA C 206 P PED C 207 1555 1555 1.61 LINK O3' PED C 207 P DG C 208 1555 1555 1.61 LINK C1' PED C 207 N THR A 2 1555 1555 1.49 LINK O3' DC D 216 P BRU D 217 1555 1555 1.61 LINK O3' BRU D 217 P BRU D 218 1555 1555 1.60 LINK O3' BRU D 218 P DC D 219 1555 1555 1.61 LINK O3' DA D 220 P BRU D 221 1555 1555 1.62 LINK O3' BRU D 221 P DC D 222 1555 1555 1.60 LINK O3' DC D 223 P BRU D 224 1555 1555 1.61 LINK O3' BRU D 224 P DG D 225 1555 1555 1.60 LINK O3' DA E 206 P PED E 207 1555 1555 1.61 LINK O3' PED E 207 P DG E 208 1555 1555 1.60 LINK C1' PED E 207 N THR B 2 1555 1555 1.45 LINK O3' DC F 216 P BRU F 217 1555 1555 1.61 LINK O3' BRU F 217 P BRU F 218 1555 1555 1.60 LINK O3' BRU F 218 P DC F 219 1555 1555 1.61 LINK O3' DA F 220 P BRU F 221 1555 1555 1.62 LINK O3' BRU F 221 P DC F 222 1555 1555 1.60 LINK O3' DC F 223 P BRU F 224 1555 1555 1.61 LINK O3' BRU F 224 P DG F 225 1555 1555 1.60 SITE 1 AC1 7 THR A 49 PHE A 50 TYR A 104 PRO A 106 SITE 2 AC1 7 HIS A 107 SER A 110 HOH A1080 SITE 1 AC2 3 ARG A 117 LYS A 121 GLN A 124 SITE 1 AC3 7 THR B 49 PHE B 50 PHE B 59 TYR B 104 SITE 2 AC3 7 PRO B 106 HIS B 107 SER B 110 SITE 1 AC4 6 PHE A 66 LYS A 69 ARG A 70 GLU A 73 SITE 2 AC4 6 HOH A1044 HOH A1088 CRYST1 184.059 184.059 100.855 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005433 0.003137 0.000000 0.00000 SCALE2 0.000000 0.006274 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009915 0.00000