PDB Short entry for 2FCJ HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-DEC-05 2FCJ TITLE STRUCTURE OF SMALL TOPRIM DOMAIN PROTEIN FROM BACILLUS TITLE 2 STEAROTHERMOPHILUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL TOPRIM DOMAIN PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: RBSTP2199; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOPRIM DOMAIN, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR P.REZACOVA,Y.CHEN,D.BOREK,F.COLLART,A.JOACHIMIAK,Z.OTWINOWSKI,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 24-OCT-12 2FCJ 1 JRNL REVDAT 3 13-JUL-11 2FCJ 1 VERSN REVDAT 2 24-FEB-09 2FCJ 1 VERSN REVDAT 1 24-JAN-06 2FCJ 0 JRNL AUTH P.REZACOVA,D.BOREK,S.F.MOY,A.JOACHIMIAK,Z.OTWINOWSKI JRNL TITL CRYSTAL STRUCTURE AND PUTATIVE FUNCTION OF SMALL TOPRIM JRNL TITL 2 DOMAIN-CONTAINING PROTEIN FROM BACILLUS STEAROTHERMOPHILUS. JRNL REF PROTEINS V. 70 311 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 17705269 JRNL DOI 10.1002/PROT.21511 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 75438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1538 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5303 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 393 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.386 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3001 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4070 ; 1.163 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 364 ; 6.192 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;31.497 ;22.848 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 547 ;13.164 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;12.911 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2276 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1411 ; 0.233 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2117 ; 0.321 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 550 ; 0.219 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 105 ; 0.231 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 104 ; 0.267 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1850 ; 1.691 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2911 ; 2.345 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1276 ; 2.290 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1157 ; 3.198 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 113 5 REMARK 3 1 B 3 B 113 5 REMARK 3 1 C 3 C 113 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 419 ; 0.46 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 419 ; 0.31 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 419 ; 0.48 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 377 ; 1.00 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 377 ; 0.97 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 377 ; 1.16 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 419 ; 2.77 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 419 ; 1.79 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 419 ; 2.60 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 377 ; 3.34 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 377 ; 2.55 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 377 ; 2.98 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB035716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77810 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 15.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 76.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH6.0; 26% PEG3350; 0.2M REMARK 280 AMMONIUM SULFATE; 18% GLYCEROL; PROTEIN CONCENTRATION 3.5MG/ML; REMARK 280 MICRO-SEEDING, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.30850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.14950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.36000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.14950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.30850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.36000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 18.30850 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 36.36000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 115 REMARK 465 GLY A 116 REMARK 465 ARG A 117 REMARK 465 GLY A 118 REMARK 465 GLU A 119 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 GLU C 119 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 114 CG SD CE REMARK 470 ARG B 2 CG CD CZ NH1 NH2 REMARK 470 ARG C 3 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 117 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 234 O HOH C 735 1.88 REMARK 500 O GLU B 49 O HOH B 539 1.91 REMARK 500 O MET A 1 O HOH A 232 1.98 REMARK 500 O HOH C 730 O HOH C 735 2.03 REMARK 500 O HOH B 541 O HOH B 542 2.13 REMARK 500 OE2 GLU B 76 O HOH B 422 2.18 REMARK 500 OE1 GLU C 5 O HOH C 697 2.18 REMARK 500 CG MET A 1 O HOH A 233 2.18 REMARK 500 O HOH A 149 O HOH A 235 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 228 O HOH B 490 4455 1.73 REMARK 500 O HOH A 231 O HOH C 699 2564 2.04 REMARK 500 O HOH B 544 O HOH C 734 2564 2.04 REMARK 500 OG SER B 14 O HOH B 441 4555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 61 CD GLU A 61 OE1 0.333 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 61 CG - CD - OE2 ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 87 -65.81 80.53 REMARK 500 ALA B 59 58.37 -92.72 REMARK 500 ARG B 87 -55.27 72.08 REMARK 500 ARG C 87 -63.27 75.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 MET A 114 24.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC35832 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE WAS NO SUITABLE SEQUENCE DATABASE REMARK 999 REFERENCE AT THE TIME OF PROCESSING. DBREF 2FCJ A 1 119 PDB 2FCJ 2FCJ 1 119 DBREF 2FCJ B 1 119 PDB 2FCJ 2FCJ 1 119 DBREF 2FCJ C 1 119 PDB 2FCJ 2FCJ 1 119 SEQRES 1 A 119 MET ARG ARG VAL GLU LYS VAL ILE ILE VAL GLU GLY ARG SEQRES 2 A 119 SER ASP LYS GLN LYS VAL ALA ALA VAL LEU ASN GLU PRO SEQRES 3 A 119 VAL VAL ILE VAL CYS THR ASN GLY THR ILE SER ASP ALA SEQRES 4 A 119 ARG LEU GLU GLU LEU ALA ASP GLU LEU GLU GLY TYR ASP SEQRES 5 A 119 VAL TYR LEU LEU ALA ASP ALA ASP GLU ALA GLY GLU LYS SEQRES 6 A 119 LEU ARG ARG GLN PHE ARG ARG MET PHE PRO GLU ALA GLU SEQRES 7 A 119 HIS LEU TYR ILE ASP ARG ALA TYR ARG GLU VAL ALA ALA SEQRES 8 A 119 ALA PRO ILE TRP HIS LEU ALA GLN VAL LEU LEU ARG ALA SEQRES 9 A 119 ARG PHE ASP VAL ARG ILE GLU SER LEU MET ARG GLY ARG SEQRES 10 A 119 GLY GLU SEQRES 1 B 119 MET ARG ARG VAL GLU LYS VAL ILE ILE VAL GLU GLY ARG SEQRES 2 B 119 SER ASP LYS GLN LYS VAL ALA ALA VAL LEU ASN GLU PRO SEQRES 3 B 119 VAL VAL ILE VAL CYS THR ASN GLY THR ILE SER ASP ALA SEQRES 4 B 119 ARG LEU GLU GLU LEU ALA ASP GLU LEU GLU GLY TYR ASP SEQRES 5 B 119 VAL TYR LEU LEU ALA ASP ALA ASP GLU ALA GLY GLU LYS SEQRES 6 B 119 LEU ARG ARG GLN PHE ARG ARG MET PHE PRO GLU ALA GLU SEQRES 7 B 119 HIS LEU TYR ILE ASP ARG ALA TYR ARG GLU VAL ALA ALA SEQRES 8 B 119 ALA PRO ILE TRP HIS LEU ALA GLN VAL LEU LEU ARG ALA SEQRES 9 B 119 ARG PHE ASP VAL ARG ILE GLU SER LEU MET ARG GLY ARG SEQRES 10 B 119 GLY GLU SEQRES 1 C 119 MET ARG ARG VAL GLU LYS VAL ILE ILE VAL GLU GLY ARG SEQRES 2 C 119 SER ASP LYS GLN LYS VAL ALA ALA VAL LEU ASN GLU PRO SEQRES 3 C 119 VAL VAL ILE VAL CYS THR ASN GLY THR ILE SER ASP ALA SEQRES 4 C 119 ARG LEU GLU GLU LEU ALA ASP GLU LEU GLU GLY TYR ASP SEQRES 5 C 119 VAL TYR LEU LEU ALA ASP ALA ASP GLU ALA GLY GLU LYS SEQRES 6 C 119 LEU ARG ARG GLN PHE ARG ARG MET PHE PRO GLU ALA GLU SEQRES 7 C 119 HIS LEU TYR ILE ASP ARG ALA TYR ARG GLU VAL ALA ALA SEQRES 8 C 119 ALA PRO ILE TRP HIS LEU ALA GLN VAL LEU LEU ARG ALA SEQRES 9 C 119 ARG PHE ASP VAL ARG ILE GLU SER LEU MET ARG GLY ARG SEQRES 10 C 119 GLY GLU HET SO4 C 501 5 HET SO4 C 502 5 HET MES C 601 12 HET GOL B 401 7 HET GOL B 403 6 HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 MES C6 H13 N O4 S FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *393(H2 O) HELIX 1 1 GLY A 12 LEU A 23 1 12 HELIX 2 2 SER A 37 LEU A 48 1 12 HELIX 3 3 ASP A 60 PHE A 74 1 15 HELIX 4 4 PRO A 93 ALA A 104 1 12 HELIX 5 5 ARG A 109 LEU A 113 5 5 HELIX 6 6 GLY B 12 LEU B 23 1 12 HELIX 7 7 SER B 37 LEU B 48 1 12 HELIX 8 8 ASP B 60 PHE B 74 1 15 HELIX 9 9 ASP B 83 ARG B 87 5 5 HELIX 10 10 GLU B 88 ALA B 92 5 5 HELIX 11 11 PRO B 93 ALA B 104 1 12 HELIX 12 12 ARG B 109 MET B 114 5 6 HELIX 13 13 GLY C 12 LEU C 23 1 12 HELIX 14 14 SER C 37 LEU C 48 1 12 HELIX 15 15 ASP C 60 PHE C 74 1 15 HELIX 16 16 ASP C 83 ARG C 87 5 5 HELIX 17 17 GLU C 88 ALA C 92 5 5 HELIX 18 18 PRO C 93 ALA C 104 1 12 HELIX 19 19 ARG C 109 LEU C 113 5 5 SHEET 1 A 4 VAL A 28 CYS A 31 0 SHEET 2 A 4 LYS A 6 VAL A 10 1 N VAL A 10 O VAL A 30 SHEET 3 A 4 ASP A 52 LEU A 56 1 O LEU A 56 N ILE A 9 SHEET 4 A 4 GLU A 78 LEU A 80 1 O LEU A 80 N LEU A 55 SHEET 1 B 4 VAL B 28 CYS B 31 0 SHEET 2 B 4 LYS B 6 VAL B 10 1 N ILE B 8 O VAL B 28 SHEET 3 B 4 ASP B 52 LEU B 56 1 O TYR B 54 N ILE B 9 SHEET 4 B 4 GLU B 78 LEU B 80 1 O LEU B 80 N LEU B 55 SHEET 1 C 4 VAL C 28 CYS C 31 0 SHEET 2 C 4 LYS C 6 VAL C 10 1 N VAL C 10 O VAL C 30 SHEET 3 C 4 ASP C 52 LEU C 56 1 O LEU C 56 N ILE C 9 SHEET 4 C 4 GLU C 78 LEU C 80 1 O LEU C 80 N LEU C 55 LINK NH2 ARG C 109 O2 SO4 C 502 1555 1555 1.98 SITE 1 AC1 4 TRP C 95 HIS C 96 GLN C 99 ARG C 103 SITE 1 AC2 5 HOH B 492 LYS C 65 ARG C 68 ARG C 109 SITE 2 AC2 5 HOH C 626 SITE 1 AC3 11 HOH B 464 HOH B 471 GLU C 11 GLY C 12 SITE 2 AC3 11 ASP C 58 ASP C 60 GLU C 61 ALA C 62 SITE 3 AC3 11 ARG C 87 GLU C 88 HOH C 729 SITE 1 AC4 7 LEU B 102 ARG B 103 HOH B 413 GLU C 25 SITE 2 AC4 7 PRO C 26 VAL C 27 ILE C 29 SITE 1 AC5 7 ASN B 24 ASP B 107 VAL B 108 VAL C 28 SITE 2 AC5 7 ILE C 29 HOH C 602 HOH C 629 CRYST1 36.617 72.720 116.299 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013751 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008599 0.00000