PDB Short entry for 2FDB HEADER HORMONE/GROWTH FACTOR/TRANSFERASE 13-DEC-05 2FDB TITLE CRYSTAL STRUCTURE OF FIBROBLAST GROWTH FACTOR (FGF)8B IN COMPLEX WITH TITLE 2 FGF RECEPTOR (FGFR) 2C COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR 8 ISOFORM B; COMPND 3 CHAIN: M, N; COMPND 4 SYNONYM: FGF8B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 2; COMPND 8 CHAIN: P, R; COMPND 9 SYNONYM: FGFR2C; FGFR-2; KERATINOCYTE GROWTH FACTOR RECEPTOR 2; CD332 COMPND 10 ANTIGEN; COMPND 11 EC: 2.7.1.112; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: FGFR2, BEK, KSAM; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-TREFOIL FOLD; IMMUNOGLOBULIN FOLD, HORMONE-GROWTH FACTOR- KEYWDS 2 TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.MOHAMMADI,S.K.OLSEN REVDAT 5 30-AUG-23 2FDB 1 REMARK REVDAT 4 20-OCT-21 2FDB 1 SEQADV REVDAT 3 24-FEB-09 2FDB 1 VERSN REVDAT 2 28-FEB-06 2FDB 1 SEQADV REVDAT 1 07-FEB-06 2FDB 0 JRNL AUTH S.K.OLSEN,J.Y.H.LI,C.BROMLEIGH,A.V.ELISEENKOVA,O.A.IBRAHIMI, JRNL AUTH 2 Z.LAO,F.ZHANG,R.J.LINHARDT,A.L.JOYNER,M.MOHAMMADI JRNL TITL STRUCTURAL BASIS BY WHICH ALTERNATIVE SPLICING MODULATES THE JRNL TITL 2 ORGANIZER ACTIVITY OF FGF8 IN THE BRAIN JRNL REF GENES DEV. V. 20 185 2006 JRNL REFN ISSN 0890-9369 JRNL PMID 16384934 JRNL DOI 10.1101/GAD.1365406 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 43700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 15.300 REMARK 3 FREE R VALUE TEST SET COUNT : 6666 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.82100 REMARK 3 B22 (A**2) : 0.90700 REMARK 3 B33 (A**2) : 1.72800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.67200 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.327 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 0.772 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.947 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.610 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.439 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.122 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44825 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30600 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1EVT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18.5% MPEG 5000, 0.15M MAGNESIUM REMARK 280 CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.42300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.45400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.42300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.45400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE TWO BIOLOGICAL UNITS. 1) CHAIN A AND CHAIN B, AND REMARK 300 2) CHAIN C AND CHAIN D (I.E. TWO COMPLEXES OF FGF8B WITH FGFR2C REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: N, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN M 23 REMARK 465 VAL M 24 REMARK 465 THR M 25 REMARK 465 VAL M 26 REMARK 465 GLN M 27 REMARK 465 SER M 28 REMARK 465 SER M 29 REMARK 465 PRO M 30 REMARK 465 ASN M 31 REMARK 465 GLY M 181 REMARK 465 HIS M 182 REMARK 465 HIS M 183 REMARK 465 THR M 184 REMARK 465 THR M 185 REMARK 465 GLU M 186 REMARK 465 ASN P 2149 REMARK 465 ASN P 2150 REMARK 465 GLU P 2295 REMARK 465 LYS P 2296 REMARK 465 ASN P 2297 REMARK 465 GLY P 2298 REMARK 465 SER P 2299 REMARK 465 LYS P 2300 REMARK 465 TYR P 2301 REMARK 465 GLY P 2302 REMARK 465 PRO P 2303 REMARK 465 ASP P 2304 REMARK 465 GLY P 2305 REMARK 465 LEU P 2306 REMARK 465 PRO P 2307 REMARK 465 PRO P 2361 REMARK 465 ALA P 2362 REMARK 465 PRO P 2363 REMARK 465 GLY P 2364 REMARK 465 ARG P 2365 REMARK 465 GLU P 2366 REMARK 465 LYS P 2367 REMARK 465 GLU P 2368 REMARK 465 GLN N 1023 REMARK 465 VAL N 1024 REMARK 465 THR N 1025 REMARK 465 VAL N 1026 REMARK 465 GLN N 1027 REMARK 465 SER N 1028 REMARK 465 SER N 1029 REMARK 465 PRO N 1030 REMARK 465 ASN N 1031 REMARK 465 ARG N 1180 REMARK 465 GLY N 1181 REMARK 465 HIS N 1182 REMARK 465 HIS N 1183 REMARK 465 THR N 1184 REMARK 465 THR N 1185 REMARK 465 GLU N 1186 REMARK 465 ASN R 3149 REMARK 465 ASN R 3150 REMARK 465 GLU R 3295 REMARK 465 LYS R 3296 REMARK 465 ASN R 3297 REMARK 465 GLY R 3298 REMARK 465 SER R 3299 REMARK 465 LYS R 3300 REMARK 465 TYR R 3301 REMARK 465 GLY R 3302 REMARK 465 PRO R 3303 REMARK 465 ASP R 3304 REMARK 465 GLY R 3305 REMARK 465 LEU R 3306 REMARK 465 PRO R 3307 REMARK 465 ASN R 3318 REMARK 465 THR R 3319 REMARK 465 THR R 3320 REMARK 465 ASP R 3321 REMARK 465 LYS R 3322 REMARK 465 GLU R 3323 REMARK 465 PRO R 3361 REMARK 465 ALA R 3362 REMARK 465 PRO R 3363 REMARK 465 GLY R 3364 REMARK 465 ARG R 3365 REMARK 465 GLU R 3366 REMARK 465 LYS R 3367 REMARK 465 GLU R 3368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG M 37 CG CD NE CZ NH1 NH2 REMARK 470 GLU M 38 CG CD OE1 OE2 REMARK 470 LYS M 63 CG CD CE NZ REMARK 470 ARG M 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS M 85 CG CD CE NZ REMARK 470 LYS M 113 CG CD CE NZ REMARK 470 SER M 120 OG REMARK 470 LYS M 123 CG CD CE NZ REMARK 470 GLU M 147 CG CD OE1 OE2 REMARK 470 LYS M 161 CG CD CE NZ REMARK 470 SER M 163 OG REMARK 470 LYS M 164 CG CD CE NZ REMARK 470 ARG M 166 CG CD NE CZ NH1 NH2 REMARK 470 GLU P2160 CG CD OE1 OE2 REMARK 470 GLU P2163 CG CD OE1 OE2 REMARK 470 LYS P2176 CG CD CE NZ REMARK 470 ASN P2184 CG OD1 ND2 REMARK 470 ARG P2210 CG CD NE CZ NH1 NH2 REMARK 470 GLN P2212 CG CD OE1 NE2 REMARK 470 HIS P2213 CG ND1 CD2 CE1 NE2 REMARK 470 GLU P2236 CG CD OE1 OE2 REMARK 470 TYR P2237 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU P2250 CG CD OE1 OE2 REMARK 470 VAL P2269 CG1 CG2 REMARK 470 VAL P2294 CG1 CG2 REMARK 470 TYR P2308 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS P2313 CG CD CE NZ REMARK 470 GLU P2335 CG CD OE1 OE2 REMARK 470 GLN N1034 CG CD OE1 NE2 REMARK 470 ARG N1037 CG CD NE CZ NH1 NH2 REMARK 470 GLU N1038 CG CD OE1 OE2 REMARK 470 GLN N1039 CG CD OE1 NE2 REMARK 470 LYS N1071 CG CD CE NZ REMARK 470 ARG N1072 CG CD NE CZ NH1 NH2 REMARK 470 LYS N1112 CG CD CE NZ REMARK 470 LYS N1113 CG CD CE NZ REMARK 470 SER N1120 OG REMARK 470 LYS N1123 CG CD CE NZ REMARK 470 LYS N1145 CG CD CE NZ REMARK 470 GLU N1147 CG CD OE1 OE2 REMARK 470 ARG N1155 CG CD NE CZ NH1 NH2 REMARK 470 LYS N1156 CG CD CE NZ REMARK 470 LYS N1161 CG CD CE NZ REMARK 470 SER N1163 OG REMARK 470 LYS N1164 CG CD CE NZ REMARK 470 ARG N1166 CG CD NE CZ NH1 NH2 REMARK 470 LYS R3151 CG CD CE NZ REMARK 470 ASN R3158 CG OD1 ND2 REMARK 470 GLU R3160 CG CD OE1 OE2 REMARK 470 LYS R3161 CG CD CE NZ REMARK 470 GLU R3163 CG CD OE1 OE2 REMARK 470 ARG R3165 CG CD NE CZ NH1 NH2 REMARK 470 ARG R3178 CG CD NE CZ NH1 NH2 REMARK 470 ASN R3184 CG OD1 ND2 REMARK 470 LYS R3196 CG CD CE NZ REMARK 470 GLU R3197 CG CD OE1 OE2 REMARK 470 ARG R3210 CG CD NE CZ NH1 NH2 REMARK 470 GLN R3212 CG CD OE1 NE2 REMARK 470 HIS R3213 CG ND1 CD2 CE1 NE2 REMARK 470 LYS R3226 CG CD CE NZ REMARK 470 GLU R3234 CG CD OE1 OE2 REMARK 470 GLU R3236 CG CD OE1 OE2 REMARK 470 TYR R3237 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS R3279 CG CD CE NZ REMARK 470 VAL R3294 CG1 CG2 REMARK 470 TYR R3308 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL R3317 CG1 CG2 REMARK 470 VAL R3332 CG1 CG2 REMARK 470 GLU R3335 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR M 92 -167.56 -170.57 REMARK 500 PHE M 93 173.95 -59.17 REMARK 500 ASN P2158 72.30 -155.06 REMARK 500 ALA P2172 2.94 82.96 REMARK 500 LYS P2322 161.23 177.00 REMARK 500 THR N1092 -166.71 -171.77 REMARK 500 ASN R3158 74.78 -156.25 REMARK 500 ALA R3172 4.74 82.73 REMARK 500 ARG R3253 35.66 -94.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR R3281 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2FDB M 23 186 UNP P55075 FGF8_HUMAN 52 204 DBREF 2FDB P 2149 2368 UNP Q9UQH9 FGFR2_HUMAN 149 368 DBREF 2FDB N 1023 1186 UNP P55075 FGF8_HUMAN 52 204 DBREF 2FDB R 3149 3368 UNP Q9UQH9 FGFR2_HUMAN 149 368 SEQADV 2FDB ARG P 2253 UNP Q9UQH9 PRO 253 ENGINEERED MUTATION SEQADV 2FDB ARG R 3253 UNP Q9UQH9 PRO 253 ENGINEERED MUTATION SEQRES 1 M 164 GLN VAL THR VAL GLN SER SER PRO ASN PHE THR GLN HIS SEQRES 2 M 164 VAL ARG GLU GLN SER LEU VAL THR ASP GLN LEU SER ARG SEQRES 3 M 164 ARG LEU ILE ARG THR TYR GLN LEU TYR SER ARG THR SER SEQRES 4 M 164 GLY LYS HIS VAL GLN VAL LEU ALA ASN LYS ARG ILE ASN SEQRES 5 M 164 ALA MET ALA GLU ASP GLY ASP PRO PHE ALA LYS LEU ILE SEQRES 6 M 164 VAL GLU THR ASP THR PHE GLY SER ARG VAL ARG VAL ARG SEQRES 7 M 164 GLY ALA GLU THR GLY LEU TYR ILE CYS MET ASN LYS LYS SEQRES 8 M 164 GLY LYS LEU ILE ALA LYS SER ASN GLY LYS GLY LYS ASP SEQRES 9 M 164 CYS VAL PHE THR GLU ILE VAL LEU GLU ASN ASN TYR THR SEQRES 10 M 164 ALA LEU GLN ASN ALA LYS TYR GLU GLY TRP TYR MET ALA SEQRES 11 M 164 PHE THR ARG LYS GLY ARG PRO ARG LYS GLY SER LYS THR SEQRES 12 M 164 ARG GLN HIS GLN ARG GLU VAL HIS PHE MET LYS ARG LEU SEQRES 13 M 164 PRO ARG GLY HIS HIS THR THR GLU SEQRES 1 P 220 ASN ASN LYS ARG ALA PRO TYR TRP THR ASN THR GLU LYS SEQRES 2 P 220 MET GLU LYS ARG LEU HIS ALA VAL PRO ALA ALA ASN THR SEQRES 3 P 220 VAL LYS PHE ARG CYS PRO ALA GLY GLY ASN PRO MET PRO SEQRES 4 P 220 THR MET ARG TRP LEU LYS ASN GLY LYS GLU PHE LYS GLN SEQRES 5 P 220 GLU HIS ARG ILE GLY GLY TYR LYS VAL ARG ASN GLN HIS SEQRES 6 P 220 TRP SER LEU ILE MET GLU SER VAL VAL PRO SER ASP LYS SEQRES 7 P 220 GLY ASN TYR THR CYS VAL VAL GLU ASN GLU TYR GLY SER SEQRES 8 P 220 ILE ASN HIS THR TYR HIS LEU ASP VAL VAL GLU ARG SER SEQRES 9 P 220 ARG HIS ARG PRO ILE LEU GLN ALA GLY LEU PRO ALA ASN SEQRES 10 P 220 ALA SER THR VAL VAL GLY GLY ASP VAL GLU PHE VAL CYS SEQRES 11 P 220 LYS VAL TYR SER ASP ALA GLN PRO HIS ILE GLN TRP ILE SEQRES 12 P 220 LYS HIS VAL GLU LYS ASN GLY SER LYS TYR GLY PRO ASP SEQRES 13 P 220 GLY LEU PRO TYR LEU LYS VAL LEU LYS ALA ALA GLY VAL SEQRES 14 P 220 ASN THR THR ASP LYS GLU ILE GLU VAL LEU TYR ILE ARG SEQRES 15 P 220 ASN VAL THR PHE GLU ASP ALA GLY GLU TYR THR CYS LEU SEQRES 16 P 220 ALA GLY ASN SER ILE GLY ILE SER PHE HIS SER ALA TRP SEQRES 17 P 220 LEU THR VAL LEU PRO ALA PRO GLY ARG GLU LYS GLU SEQRES 1 N 164 GLN VAL THR VAL GLN SER SER PRO ASN PHE THR GLN HIS SEQRES 2 N 164 VAL ARG GLU GLN SER LEU VAL THR ASP GLN LEU SER ARG SEQRES 3 N 164 ARG LEU ILE ARG THR TYR GLN LEU TYR SER ARG THR SER SEQRES 4 N 164 GLY LYS HIS VAL GLN VAL LEU ALA ASN LYS ARG ILE ASN SEQRES 5 N 164 ALA MET ALA GLU ASP GLY ASP PRO PHE ALA LYS LEU ILE SEQRES 6 N 164 VAL GLU THR ASP THR PHE GLY SER ARG VAL ARG VAL ARG SEQRES 7 N 164 GLY ALA GLU THR GLY LEU TYR ILE CYS MET ASN LYS LYS SEQRES 8 N 164 GLY LYS LEU ILE ALA LYS SER ASN GLY LYS GLY LYS ASP SEQRES 9 N 164 CYS VAL PHE THR GLU ILE VAL LEU GLU ASN ASN TYR THR SEQRES 10 N 164 ALA LEU GLN ASN ALA LYS TYR GLU GLY TRP TYR MET ALA SEQRES 11 N 164 PHE THR ARG LYS GLY ARG PRO ARG LYS GLY SER LYS THR SEQRES 12 N 164 ARG GLN HIS GLN ARG GLU VAL HIS PHE MET LYS ARG LEU SEQRES 13 N 164 PRO ARG GLY HIS HIS THR THR GLU SEQRES 1 R 220 ASN ASN LYS ARG ALA PRO TYR TRP THR ASN THR GLU LYS SEQRES 2 R 220 MET GLU LYS ARG LEU HIS ALA VAL PRO ALA ALA ASN THR SEQRES 3 R 220 VAL LYS PHE ARG CYS PRO ALA GLY GLY ASN PRO MET PRO SEQRES 4 R 220 THR MET ARG TRP LEU LYS ASN GLY LYS GLU PHE LYS GLN SEQRES 5 R 220 GLU HIS ARG ILE GLY GLY TYR LYS VAL ARG ASN GLN HIS SEQRES 6 R 220 TRP SER LEU ILE MET GLU SER VAL VAL PRO SER ASP LYS SEQRES 7 R 220 GLY ASN TYR THR CYS VAL VAL GLU ASN GLU TYR GLY SER SEQRES 8 R 220 ILE ASN HIS THR TYR HIS LEU ASP VAL VAL GLU ARG SER SEQRES 9 R 220 ARG HIS ARG PRO ILE LEU GLN ALA GLY LEU PRO ALA ASN SEQRES 10 R 220 ALA SER THR VAL VAL GLY GLY ASP VAL GLU PHE VAL CYS SEQRES 11 R 220 LYS VAL TYR SER ASP ALA GLN PRO HIS ILE GLN TRP ILE SEQRES 12 R 220 LYS HIS VAL GLU LYS ASN GLY SER LYS TYR GLY PRO ASP SEQRES 13 R 220 GLY LEU PRO TYR LEU LYS VAL LEU LYS ALA ALA GLY VAL SEQRES 14 R 220 ASN THR THR ASP LYS GLU ILE GLU VAL LEU TYR ILE ARG SEQRES 15 R 220 ASN VAL THR PHE GLU ASP ALA GLY GLU TYR THR CYS LEU SEQRES 16 R 220 ALA GLY ASN SER ILE GLY ILE SER PHE HIS SER ALA TRP SEQRES 17 R 220 LEU THR VAL LEU PRO ALA PRO GLY ARG GLU LYS GLU FORMUL 5 HOH *125(H2 O) HELIX 1 1 PHE M 32 SER M 40 1 9 HELIX 2 2 ASP M 81 ALA M 84 5 4 HELIX 3 3 GLY M 124 ASP M 126 5 3 HELIX 4 4 LYS M 161 THR M 165 5 5 HELIX 5 5 GLN M 169 VAL M 172 5 4 HELIX 6 6 ASN P 2158 GLU P 2163 1 6 HELIX 7 7 LYS P 2199 ARG P 2203 5 5 HELIX 8 8 ASN P 2211 HIS P 2213 5 3 HELIX 9 9 VAL P 2222 LYS P 2226 5 5 HELIX 10 10 THR P 2333 ALA P 2337 5 5 HELIX 11 11 PHE N 1032 SER N 1040 1 9 HELIX 12 12 ASP N 1081 ALA N 1084 5 4 HELIX 13 13 GLY N 1124 ASP N 1126 5 3 HELIX 14 14 LYS N 1161 THR N 1165 5 5 HELIX 15 15 GLN N 1169 VAL N 1172 5 4 HELIX 16 16 ASN R 3158 GLU R 3163 1 6 HELIX 17 17 LYS R 3199 ARG R 3203 5 5 HELIX 18 18 ASN R 3211 HIS R 3213 5 3 HELIX 19 19 VAL R 3222 LYS R 3226 5 5 HELIX 20 20 THR R 3333 ALA R 3337 5 5 SHEET 1 A 7 ILE M 51 SER M 58 0 SHEET 2 A 7 LEU M 86 THR M 92 -1 O VAL M 88 N ARG M 52 SHEET 3 A 7 ARG M 96 GLY M 101 -1 O ARG M 96 N ASP M 91 SHEET 4 A 7 VAL M 128 VAL M 133 -1 O PHE M 129 N VAL M 97 SHEET 5 A 7 THR M 139 ASN M 143 -1 O GLN M 142 N THR M 130 SHEET 6 A 7 PHE M 174 ARG M 177 -1 O PHE M 174 N THR M 139 SHEET 7 A 7 ILE M 51 SER M 58 -1 N GLN M 55 O ARG M 177 SHEET 1 B 2 HIS M 64 VAL M 67 0 SHEET 2 B 2 ILE M 73 ALA M 77 -1 O ASN M 74 N GLN M 66 SHEET 1 C 2 TYR M 107 MET M 110 0 SHEET 2 C 2 LEU M 116 LYS M 119 -1 O ILE M 117 N CYS M 109 SHEET 1 D 2 ARG P2152 TRP P2156 0 SHEET 2 D 2 ALA P2181 ASN P2184 -1 O GLY P2182 N TYR P2155 SHEET 1 E 5 LEU P2166 PRO P2170 0 SHEET 2 E 5 GLY P2238 VAL P2249 1 O HIS P2245 N HIS P2167 SHEET 3 E 5 GLY P2227 ASN P2235 -1 N TYR P2229 O TYR P2244 SHEET 4 E 5 THR P2188 LYS P2193 -1 N THR P2188 O GLU P2234 SHEET 5 E 5 LYS P2196 GLU P2197 -1 O LYS P2196 N LYS P2193 SHEET 1 F 3 VAL P2175 ARG P2178 0 SHEET 2 F 3 SER P2215 MET P2218 -1 O MET P2218 N VAL P2175 SHEET 3 F 3 LYS P2208 ARG P2210 -1 N LYS P2208 O ILE P2217 SHEET 1 G 4 ILE P2257 LEU P2258 0 SHEET 2 G 4 VAL P2274 TYR P2281 -1 O TYR P2281 N ILE P2257 SHEET 3 G 4 LYS P2322 ILE P2329 -1 O ILE P2329 N VAL P2274 SHEET 4 G 4 ALA P2315 THR P2319 -1 N VAL P2317 O ILE P2324 SHEET 1 H 5 ALA P2266 VAL P2269 0 SHEET 2 H 5 ILE P2350 LEU P2360 1 O THR P2358 N ALA P2266 SHEET 3 H 5 GLY P2338 GLY P2345 -1 N TYR P2340 O ALA P2355 SHEET 4 H 5 HIS P2287 LYS P2292 -1 N ILE P2291 O THR P2341 SHEET 5 H 5 LYS P2310 LEU P2312 -1 O LEU P2312 N TRP P2290 SHEET 1 I 7 ILE N1051 SER N1058 0 SHEET 2 I 7 LEU N1086 THR N1092 -1 O VAL N1088 N ARG N1052 SHEET 3 I 7 ARG N1096 GLY N1101 -1 O ARG N1096 N ASP N1091 SHEET 4 I 7 VAL N1128 VAL N1133 -1 O PHE N1129 N VAL N1097 SHEET 5 I 7 THR N1139 ASN N1143 -1 O GLN N1142 N THR N1130 SHEET 6 I 7 PHE N1174 ARG N1177 -1 O PHE N1174 N THR N1139 SHEET 7 I 7 ILE N1051 SER N1058 -1 N GLN N1055 O ARG N1177 SHEET 1 J 2 HIS N1064 VAL N1067 0 SHEET 2 J 2 ILE N1073 ALA N1077 -1 O ASN N1074 N GLN N1066 SHEET 1 K 2 TYR N1107 MET N1110 0 SHEET 2 K 2 LEU N1116 LYS N1119 -1 O ILE N1117 N CYS N1109 SHEET 1 L 2 ARG R3152 TRP R3156 0 SHEET 2 L 2 ALA R3181 ASN R3184 -1 O GLY R3182 N TYR R3155 SHEET 1 M 5 LEU R3166 PRO R3170 0 SHEET 2 M 5 GLY R3238 VAL R3249 1 O HIS R3245 N HIS R3167 SHEET 3 M 5 GLY R3227 ASN R3235 -1 N TYR R3229 O TYR R3244 SHEET 4 M 5 THR R3188 LYS R3193 -1 N THR R3188 O GLU R3234 SHEET 5 M 5 LYS R3196 GLU R3197 -1 O LYS R3196 N LYS R3193 SHEET 1 N 3 VAL R3175 ARG R3178 0 SHEET 2 N 3 SER R3215 MET R3218 -1 O MET R3218 N VAL R3175 SHEET 3 N 3 LYS R3208 ARG R3210 -1 N LYS R3208 O ILE R3217 SHEET 1 O 2 ILE R3257 LEU R3258 0 SHEET 2 O 2 VAL R3280 TYR R3281 -1 O TYR R3281 N ILE R3257 SHEET 1 P 5 ALA R3266 VAL R3269 0 SHEET 2 P 5 ILE R3350 LEU R3360 1 O THR R3358 N ALA R3266 SHEET 3 P 5 GLY R3338 GLY R3345 -1 N TYR R3340 O ALA R3355 SHEET 4 P 5 HIS R3287 LYS R3292 -1 N ILE R3291 O THR R3341 SHEET 5 P 5 LYS R3310 LEU R3312 -1 O LYS R3310 N LYS R3292 SHEET 1 Q 2 VAL R3274 CYS R3278 0 SHEET 2 Q 2 GLU R3325 ILE R3329 -1 O ILE R3329 N VAL R3274 SSBOND 1 CYS M 109 CYS M 127 1555 1555 2.54 SSBOND 2 CYS P 2179 CYS P 2231 1555 1555 2.53 SSBOND 3 CYS P 2278 CYS P 2342 1555 1555 2.52 SSBOND 4 CYS N 1109 CYS N 1127 1555 1555 2.64 SSBOND 5 CYS R 3179 CYS R 3231 1555 1555 2.53 SSBOND 6 CYS R 3278 CYS R 3342 1555 1555 2.63 CISPEP 1 ASN P 2184 PRO P 2185 0 -0.07 CISPEP 2 LEU P 2262 PRO P 2263 0 -0.12 CISPEP 3 ASN R 3184 PRO R 3185 0 -0.04 CISPEP 4 LEU R 3262 PRO R 3263 0 -0.22 CRYST1 170.846 46.908 109.616 90.00 91.66 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005853 0.000000 0.000170 0.00000 SCALE2 0.000000 0.021318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009127 0.00000