PDB Short entry for 2FLB HEADER HYDROLASE/BLOOD CLOTTING 05-JAN-06 2FLB TITLE DISCOVERY OF A NOVEL HYDROXY PYRAZOLE BASED FACTOR IXA INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR VII; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: LIGHT CHAIN, RESIDUES 61-212; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: COAGULATION FACTOR VII; COMPND 8 CHAIN: H; COMPND 9 FRAGMENT: HEAVY CHAIN, RESIDUES 213-466; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TISSUE FACTOR; COMPND 13 CHAIN: T; COMPND 14 FRAGMENT: RESIDUES 34-251; COMPND 15 SYNONYM: TF, COAGULATION FACTOR III, THROMBOPLASTIN, CD142 ANTIGEN; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: F7; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: F3; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21-DES3; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PET-21A(+) KEYWDS ACTIVE SITE-DIRECTED, SHORT HYDROGEN BOND-MEDIATED, PYRAZOLE-BASED KEYWDS 2 INHIBITOR, HYDROLASE-BLOOD CLOTTING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.A.KATZ REVDAT 4 11-OCT-17 2FLB 1 REMARK REVDAT 3 24-FEB-09 2FLB 1 VERSN REVDAT 2 18-APR-06 2FLB 1 JRNL REVDAT 1 04-APR-06 2FLB 0 JRNL AUTH D.VIJAYKUMAR,P.A.SPRENGELER,M.SHAGHAFI,J.R.SPENCER,B.A.KATZ, JRNL AUTH 2 C.YU,R.RAI,W.B.YOUNG,B.SCHULTZ,J.JANC JRNL TITL DISCOVERY OF NOVEL HYDROXY PYRAZOLE BASED FACTOR IXA JRNL TITL 2 INHIBITOR. JRNL REF BIOORG.MED.CHEM.LETT. V. 16 2796 2006 JRNL REFN ISSN 0960-894X JRNL PMID 16487703 JRNL DOI 10.1016/J.BMCL.2006.01.123 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 50969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5085 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3910 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 3.270 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000036014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SOFTWARE AT BEAMLINE REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRATE, 16-18% PEG5000 MME, PH REMARK 280 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.51500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASSEMBLY IS ONE MOLECULE OF FACTOR VIIA (LIGHT CHAIN REMARK 300 PLUS HEAVY CHAIN), ONE MOLECULE OF TISSUE FACTOR, AND ONE INHIBITOR REMARK 300 MOLECULE (2-(4-HYDROXY-5-PHENYL-1H-PYRAZOL-3-YL)-1H-BENZOIMIDAZOLE- REMARK 300 5-CARBOXAMIDINE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA L 1 REMARK 465 ASN L 2 REMARK 465 ALA L 3 REMARK 465 PHE L 4 REMARK 465 LEU L 5 REMARK 465 GLU L 6 REMARK 465 GLU L 7 REMARK 465 LEU L 8 REMARK 465 ARG L 9 REMARK 465 PRO L 10 REMARK 465 GLY L 11 REMARK 465 SER L 12 REMARK 465 LEU L 13 REMARK 465 GLU L 14 REMARK 465 ARG L 15 REMARK 465 GLU L 16 REMARK 465 CYS L 17 REMARK 465 LYS L 18 REMARK 465 GLU L 19 REMARK 465 GLU L 20 REMARK 465 GLN L 21 REMARK 465 CYS L 22 REMARK 465 SER L 23 REMARK 465 PHE L 24 REMARK 465 GLU L 25 REMARK 465 GLU L 26 REMARK 465 ALA L 27 REMARK 465 ARG L 28 REMARK 465 GLU L 29 REMARK 465 ILE L 30 REMARK 465 PHE L 31 REMARK 465 LYS L 32 REMARK 465 ASP L 33 REMARK 465 ALA L 34 REMARK 465 GLU L 35 REMARK 465 ARG L 36 REMARK 465 THR L 37 REMARK 465 LYS L 38 REMARK 465 LEU L 39 REMARK 465 PHE L 40 REMARK 465 TRP L 41 REMARK 465 ILE L 42 REMARK 465 SER L 43 REMARK 465 TYR L 44 REMARK 465 SER L 45 REMARK 465 ASP L 46 REMARK 465 LYS L 143 REMARK 465 ARG L 144 REMARK 465 ASN L 145 REMARK 465 ALA L 146 REMARK 465 SER L 147 REMARK 465 LYS L 148 REMARK 465 PRO L 149 REMARK 465 GLN L 150 REMARK 465 GLY L 151 REMARK 465 ARG L 152 REMARK 465 GLY T 2 REMARK 465 THR T 3 REMARK 465 THR T 4 REMARK 465 ASN T 5 REMARK 465 GLN T 110 REMARK 465 PRO T 111 REMARK 465 THR T 112 REMARK 465 ILE T 113 REMARK 465 GLN T 114 REMARK 465 SER T 115 REMARK 465 PHE T 116 REMARK 465 GLU T 117 REMARK 465 GLN T 118 REMARK 465 VAL T 119 REMARK 465 GLY T 120 REMARK 465 THR T 121 REMARK 465 LYS T 122 REMARK 465 VAL T 123 REMARK 465 ASN T 124 REMARK 465 VAL T 125 REMARK 465 THR T 126 REMARK 465 VAL T 127 REMARK 465 GLU T 128 REMARK 465 TRP T 158 REMARK 465 LYS T 159 REMARK 465 SER T 160 REMARK 465 SER T 161 REMARK 465 SER T 162 REMARK 465 SER T 163 REMARK 465 GLY T 164 REMARK 465 LYS T 165 REMARK 465 LYS T 166 REMARK 465 THR T 167 REMARK 465 ALA T 168 REMARK 465 LYS T 169 REMARK 465 THR T 170 REMARK 465 ASN T 171 REMARK 465 THR T 172 REMARK 465 ASN T 173 REMARK 465 GLU T 174 REMARK 465 PHE T 175 REMARK 465 LEU T 176 REMARK 465 ILE T 177 REMARK 465 ASP T 178 REMARK 465 VAL T 179 REMARK 465 ASP T 180 REMARK 465 LYS T 181 REMARK 465 GLY T 182 REMARK 465 GLU T 183 REMARK 465 ASN T 184 REMARK 465 TYR T 185 REMARK 465 CYS T 186 REMARK 465 PHE T 187 REMARK 465 PRO T 206 REMARK 465 VAL T 207 REMARK 465 GLU T 208 REMARK 465 CYS T 209 REMARK 465 MET T 210 REMARK 465 GLY T 211 REMARK 465 GLN T 212 REMARK 465 GLU T 213 REMARK 465 LYS T 214 REMARK 465 GLY T 215 REMARK 465 GLU T 216 REMARK 465 PHE T 217 REMARK 465 ARG T 218 REMARK 465 GLU T 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4' 6NH H 1246 O HOH H 1321 1.81 REMARK 500 OG SER H 195 O4' 6NH H 1246 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS L 84 NE2 HIS L 84 CD2 -0.074 REMARK 500 HIS L 115 NE2 HIS L 115 CD2 -0.070 REMARK 500 HIS H 71 NE2 HIS H 71 CD2 -0.076 REMARK 500 HIS H 76 NE2 HIS H 76 CD2 -0.070 REMARK 500 HIS H 101 NE2 HIS H 101 CD2 -0.076 REMARK 500 HIS H 109 NE2 HIS H 109 CD2 -0.071 REMARK 500 HIS H 199 NE2 HIS H 199 CD2 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 110 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR L 118 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 TRP H 29 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP H 29 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP H 51 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP H 51 CB - CG - CD1 ANGL. DEV. = -8.9 DEGREES REMARK 500 TRP H 51 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP H 51 CG - CD2 - CE3 ANGL. DEV. = 7.5 DEGREES REMARK 500 TRP H 61 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP H 61 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 LEU H 68 CA - CB - CG ANGL. DEV. = -15.1 DEGREES REMARK 500 ASP H 77 CA - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG H 107 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG H 134 CA - CB - CG ANGL. DEV. = -17.8 DEGREES REMARK 500 ARG H 134 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG H 134 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP H 141 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP H 141 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG H 170C NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 TRP H 207 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP H 215 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP H 215 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG H 230 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 TRP H 237 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP H 237 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG H 253 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TRP T 14 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP T 14 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP T 25 CD1 - CG - CD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 TRP T 25 CG - CD1 - NE1 ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP T 25 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP T 45 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP T 45 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG T 135 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR T 157 N - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 48 -136.31 -123.04 REMARK 500 CYS L 50 -49.99 -8.80 REMARK 500 SER L 52 35.43 -99.02 REMARK 500 SER L 53 65.18 34.75 REMARK 500 GLN L 66 -36.49 72.91 REMARK 500 GLN L 100 -87.53 -123.72 REMARK 500 TYR L 133 72.15 -118.69 REMARK 500 SER H 54 -159.65 -133.10 REMARK 500 HIS H 71 -64.99 -146.46 REMARK 500 THR H 129C -55.58 -120.72 REMARK 500 ARG H 147 11.03 57.09 REMARK 500 LYS H 170D -82.04 -68.37 REMARK 500 PRO H 170I -178.92 -58.77 REMARK 500 SER H 214 -56.26 -132.34 REMARK 500 PRO H 255 133.28 -39.13 REMARK 500 PHE T 19 -1.12 76.42 REMARK 500 SER T 88 -25.90 -39.95 REMARK 500 ASN T 138 -23.14 64.91 REMARK 500 ASP T 150 -10.53 -162.81 REMARK 500 TYR T 156 -42.89 173.75 REMARK 500 ASN T 199 -64.56 57.64 REMARK 500 ARG T 200 -58.86 55.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6NH H 1246 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O5D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FACTOR VIIA-TISSUE FACTOR-INHIBITOR COMPLEX DBREF 2FLB L 1 152 UNP P08709 FA7_HUMAN 61 212 DBREF 2FLB H 16 257 UNP P08709 FA7_HUMAN 213 466 DBREF 2FLB T 2 219 UNP P13726 TF_HUMAN 34 251 SEQRES 1 L 152 ALA ASN ALA PHE LEU GLU GLU LEU ARG PRO GLY SER LEU SEQRES 2 L 152 GLU ARG GLU CYS LYS GLU GLU GLN CYS SER PHE GLU GLU SEQRES 3 L 152 ALA ARG GLU ILE PHE LYS ASP ALA GLU ARG THR LYS LEU SEQRES 4 L 152 PHE TRP ILE SER TYR SER ASP GLY ASP GLN CYS ALA SER SEQRES 5 L 152 SER PRO CYS GLN ASN GLY GLY SER CYS LYS ASP GLN LEU SEQRES 6 L 152 GLN SER TYR ILE CYS PHE CYS LEU PRO ALA PHE GLU GLY SEQRES 7 L 152 ARG ASN CYS GLU THR HIS LYS ASP ASP GLN LEU ILE CYS SEQRES 8 L 152 VAL ASN GLU ASN GLY GLY CYS GLU GLN TYR CYS SER ASP SEQRES 9 L 152 HIS THR GLY THR LYS ARG SER CYS ARG CYS HIS GLU GLY SEQRES 10 L 152 TYR SER LEU LEU ALA ASP GLY VAL SER CYS THR PRO THR SEQRES 11 L 152 VAL GLU TYR PRO CYS GLY LYS ILE PRO ILE LEU GLU LYS SEQRES 12 L 152 ARG ASN ALA SER LYS PRO GLN GLY ARG SEQRES 1 H 254 ILE VAL GLY GLY LYS VAL CYS PRO LYS GLY GLU CYS PRO SEQRES 2 H 254 TRP GLN VAL LEU LEU LEU VAL ASN GLY ALA GLN LEU CYS SEQRES 3 H 254 GLY GLY THR LEU ILE ASN THR ILE TRP VAL VAL SER ALA SEQRES 4 H 254 ALA HIS CYS PHE ASP LYS ILE LYS ASN TRP ARG ASN LEU SEQRES 5 H 254 ILE ALA VAL LEU GLY GLU HIS ASP LEU SER GLU HIS ASP SEQRES 6 H 254 GLY ASP GLU GLN SER ARG ARG VAL ALA GLN VAL ILE ILE SEQRES 7 H 254 PRO SER THR TYR VAL PRO GLY THR THR ASN HIS ASP ILE SEQRES 8 H 254 ALA LEU LEU ARG LEU HIS GLN PRO VAL VAL LEU THR ASP SEQRES 9 H 254 HIS VAL VAL PRO LEU CYS LEU PRO GLU ARG THR PHE SER SEQRES 10 H 254 GLU ARG THR LEU ALA PHE VAL ARG PHE SER LEU VAL SER SEQRES 11 H 254 GLY TRP GLY GLN LEU LEU ASP ARG GLY ALA THR ALA LEU SEQRES 12 H 254 GLU LEU MET VAL LEU ASN VAL PRO ARG LEU MET THR GLN SEQRES 13 H 254 ASP CYS LEU GLN GLN SER ARG LYS VAL GLY ASP SER PRO SEQRES 14 H 254 ASN ILE THR GLU TYR MET PHE CYS ALA GLY TYR SER ASP SEQRES 15 H 254 GLY SER LYS ASP SER CYS LYS GLY ASP SER GLY GLY PRO SEQRES 16 H 254 HIS ALA THR HIS TYR ARG GLY THR TRP TYR LEU THR GLY SEQRES 17 H 254 ILE VAL SER TRP GLY GLN GLY CYS ALA THR VAL GLY HIS SEQRES 18 H 254 PHE GLY VAL TYR THR ARG VAL SER GLN TYR ILE GLU TRP SEQRES 19 H 254 LEU GLN LYS LEU MET ARG SER GLU PRO ARG PRO GLY VAL SEQRES 20 H 254 LEU LEU ARG ALA PRO PHE PRO SEQRES 1 T 218 GLY THR THR ASN THR VAL ALA ALA TYR ASN LEU THR TRP SEQRES 2 T 218 LYS SER THR ASN PHE LYS THR ILE LEU GLU TRP GLU PRO SEQRES 3 T 218 LYS PRO VAL ASN GLN VAL TYR THR VAL GLN ILE SER THR SEQRES 4 T 218 LYS SER GLY ASP TRP LYS SER LYS CYS PHE TYR THR THR SEQRES 5 T 218 ASP THR GLU CYS ASP LEU THR ASP GLU ILE VAL LYS ASP SEQRES 6 T 218 VAL LYS GLN THR TYR LEU ALA ARG VAL PHE SER TYR PRO SEQRES 7 T 218 ALA GLY ASN VAL GLU SER THR GLY SER ALA GLY GLU PRO SEQRES 8 T 218 LEU TYR GLU ASN SER PRO GLU PHE THR PRO TYR LEU GLU SEQRES 9 T 218 THR ASN LEU GLY GLN PRO THR ILE GLN SER PHE GLU GLN SEQRES 10 T 218 VAL GLY THR LYS VAL ASN VAL THR VAL GLU ASP GLU ARG SEQRES 11 T 218 THR LEU VAL ARG ARG ASN ASN THR PHE LEU SER LEU ARG SEQRES 12 T 218 ASP VAL PHE GLY LYS ASP LEU ILE TYR THR LEU TYR TYR SEQRES 13 T 218 TRP LYS SER SER SER SER GLY LYS LYS THR ALA LYS THR SEQRES 14 T 218 ASN THR ASN GLU PHE LEU ILE ASP VAL ASP LYS GLY GLU SEQRES 15 T 218 ASN TYR CYS PHE SER VAL GLN ALA VAL ILE PRO SER ARG SEQRES 16 T 218 THR VAL ASN ARG LYS SER THR ASP SER PRO VAL GLU CYS SEQRES 17 T 218 MET GLY GLN GLU LYS GLY GLU PHE ARG GLU HET 6NH H1246 24 HETNAM 6NH 2-(4-HYDROXY-5-PHENYL-1H-PYRAZOL-3-YL)-1H- HETNAM 2 6NH BENZOIMIDAZOLE-5-CARBOXAMIDINE FORMUL 4 6NH C17 H14 N6 O FORMUL 5 HOH *321(H2 O) HELIX 1 1 GLN L 49 SER L 53 5 5 HELIX 2 2 ASP L 86 GLN L 88 5 3 HELIX 3 3 ASN L 93 CYS L 98 5 6 HELIX 4 4 ILE L 138 GLU L 142 5 5 HELIX 5 5 ALA H 55 ASP H 60 5 6 HELIX 6 6 ASN H 60D ARG H 62 5 3 HELIX 7 7 GLU H 125 THR H 129C 1 8 HELIX 8 8 LEU H 129D VAL H 129G 5 4 HELIX 9 9 MET H 164 SER H 170B 1 9 HELIX 10 10 TYR H 234 SER H 244 1 11 HELIX 11 11 LEU T 59 VAL T 64 1 6 HELIX 12 12 THR T 101 THR T 106 1 6 HELIX 13 13 LEU T 143 GLY T 148 1 6 SHEET 1 A 2 SER L 60 ASP L 63 0 SHEET 2 A 2 TYR L 68 PHE L 71 -1 O PHE L 71 N SER L 60 SHEET 1 B 2 PHE L 76 GLU L 77 0 SHEET 2 B 2 THR L 83 HIS L 84 -1 O THR L 83 N GLU L 77 SHEET 1 C 2 TYR L 101 HIS L 105 0 SHEET 2 C 2 THR L 108 ARG L 113 -1 O SER L 111 N SER L 103 SHEET 1 D 2 TYR L 118 LEU L 120 0 SHEET 2 D 2 CYS L 127 PRO L 129 -1 O THR L 128 N SER L 119 SHEET 1 E 8 LYS H 20 VAL H 21 0 SHEET 2 E 8 MET H 156 LEU H 163 -1 O VAL H 157 N LYS H 20 SHEET 3 E 8 MET H 180 ALA H 183 -1 O CYS H 182 N LEU H 163 SHEET 4 E 8 GLY H 226 ARG H 230 -1 O TYR H 228 N PHE H 181 SHEET 5 E 8 THR H 206 TRP H 215 -1 N TRP H 215 O VAL H 227 SHEET 6 E 8 PRO H 198 TYR H 203 -1 N TYR H 203 O THR H 206 SHEET 7 E 8 PHE H 135 GLY H 140 -1 N LEU H 137 O ALA H 200 SHEET 8 E 8 MET H 156 LEU H 163 -1 O VAL H 160 N SER H 136 SHEET 1 F 8 LEU H 251 ALA H 254 0 SHEET 2 F 8 GLN H 81 PRO H 91 1 N VAL H 88 O LEU H 252 SHEET 3 F 8 ALA H 104 LEU H 108 -1 O LEU H 105 N ILE H 89 SHEET 4 F 8 TRP H 51 SER H 54 -1 N VAL H 52 O LEU H 106 SHEET 5 F 8 ALA H 39 ASN H 48 -1 N THR H 45 O VAL H 53 SHEET 6 F 8 GLN H 30 VAL H 35 -1 N VAL H 35 O ALA H 39 SHEET 7 F 8 LEU H 64 LEU H 68 -1 O ILE H 65 N LEU H 34 SHEET 8 F 8 GLN H 81 PRO H 91 -1 O ARG H 83 N ALA H 66 SHEET 1 G 3 TYR T 10 THR T 17 0 SHEET 2 G 3 LYS T 20 GLU T 26 -1 O ILE T 22 N LYS T 15 SHEET 3 G 3 GLU T 56 ASP T 58 -1 O CYS T 57 N LEU T 23 SHEET 1 H 4 LYS T 46 THR T 52 0 SHEET 2 H 4 GLN T 32 THR T 40 -1 N ILE T 38 O LYS T 46 SHEET 3 H 4 TYR T 71 PRO T 79 -1 O PHE T 76 N THR T 35 SHEET 4 H 4 LEU T 93 ASN T 96 -1 O GLU T 95 N VAL T 75 SHEET 1 I 2 ARG T 131 ARG T 136 0 SHEET 2 I 2 THR T 139 SER T 142 -1 O LEU T 141 N VAL T 134 SHEET 1 J 2 ILE T 152 THR T 154 0 SHEET 2 J 2 GLN T 190 VAL T 192 -1 O GLN T 190 N THR T 154 SSBOND 1 CYS L 50 CYS L 61 1555 1555 2.03 SSBOND 2 CYS L 55 CYS L 70 1555 1555 2.03 SSBOND 3 CYS L 72 CYS L 81 1555 1555 2.09 SSBOND 4 CYS L 91 CYS L 102 1555 1555 2.01 SSBOND 5 CYS L 98 CYS L 112 1555 1555 1.96 SSBOND 6 CYS L 114 CYS L 127 1555 1555 2.07 SSBOND 7 CYS L 135 CYS H 122 1555 1555 2.06 SSBOND 8 CYS H 22 CYS H 27 1555 1555 2.05 SSBOND 9 CYS H 42 CYS H 58 1555 1555 2.03 SSBOND 10 CYS H 168 CYS H 182 1555 1555 2.07 SSBOND 11 CYS H 191 CYS H 220 1555 1555 2.07 SSBOND 12 CYS T 49 CYS T 57 1555 1555 2.09 CISPEP 1 PHE H 256 PRO H 257 0 -1.55 CISPEP 2 GLU T 26 PRO T 27 0 2.98 SITE 1 AC1 15 LEU H 41 CYS H 42 HIS H 57 ASP H 189 SITE 2 AC1 15 SER H 190 CYS H 191 LYS H 192 SER H 195 SITE 3 AC1 15 VAL H 213 TRP H 215 GLY H 216 GLY H 219 SITE 4 AC1 15 HOH H1321 HOH H1354 HOH H1362 CRYST1 78.450 69.030 78.760 90.00 90.21 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012747 0.000000 0.000047 0.00000 SCALE2 0.000000 0.014486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012697 0.00000