PDB Short entry for 2FNE HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-JAN-06 2FNE TITLE THE CRYSTAL STRUCTURE OF THE 13TH PDZ DOMAIN OF MPDZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIPLE PDZ DOMAIN PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: MPDZ DOMAIN, RESIDUES 1955-2042; COMPND 5 SYNONYM: MULTI PDZ DOMAIN PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MPDZ, MUPP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3)R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS STRUCTURAL PROTEIN, STRUCTURAL GENOMICS, SGC, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR E.PAPAGRIGORIOU,G.BERRIDGE,C.JOHANSSON,S.COLEBROOK,E.SALAH,N.BURGESS, AUTHOR 2 C.SMEE,P.SAVITSKY,J.BRAY,G.SCHOCH,C.PHILLIPS,C.GILEADI, AUTHOR 3 M.SOUNDARAJAN,X.YANG,J.M.ELKINS,F.GORREC,A.TURNBULL,A.EDWARDS, AUTHOR 4 C.ARROWSMITH,J.WEIGELT,M.SUNDSTROM,D.A.DOYLE,STRUCTURAL GENOMICS AUTHOR 5 CONSORTIUM (SGC) REVDAT 4 30-AUG-23 2FNE 1 SEQADV REVDAT 3 24-FEB-09 2FNE 1 VERSN REVDAT 2 30-SEP-08 2FNE 1 JRNL REVDAT 1 24-JAN-06 2FNE 0 JRNL AUTH J.M.ELKINS,E.PAPAGRIGORIOU,G.BERRIDGE,X.YANG,C.PHILLIPS, JRNL AUTH 2 C.GILEADI,P.SAVITSKY,D.A.DOYLE JRNL TITL STRUCTURE OF PICK1 AND OTHER PDZ DOMAINS OBTAINED WITH THE JRNL TITL 2 HELP OF SELF-BINDING C-TERMINAL EXTENSIONS. JRNL REF PROTEIN SCI. V. 16 683 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17384233 JRNL DOI 10.1110/PS.062657507 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2038 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1799 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2157 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.208 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2207 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2995 ; 1.556 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 6.513 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;36.366 ;24.557 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;14.272 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.574 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1646 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 877 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1520 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 183 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 73 ; 0.264 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1517 ; 3.272 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2369 ; 4.243 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 759 ; 5.951 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 622 ; 8.016 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1956 A 2048 4 REMARK 3 1 B 1956 B 2048 4 REMARK 3 1 C 1956 C 2048 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 636 ; 0.34 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 636 ; 0.61 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 636 ; 0.53 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 636 ; 2.80 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 636 ; 1.98 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 636 ; 2.02 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FNE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000036082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26605 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 39.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05080 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47530 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BYG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG P3350, 0.1M ACETATE, PH 4.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.19000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EACH OF THE THREE MONOMERS FOUND IN THE ASU REPRESENTS A REMARK 300 BIOLOGICAL UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -29.75132 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -31.19000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 102.00587 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1932 REMARK 465 HIS A 1933 REMARK 465 HIS A 1934 REMARK 465 HIS A 1935 REMARK 465 HIS A 1936 REMARK 465 HIS A 1937 REMARK 465 HIS A 1938 REMARK 465 SER A 1939 REMARK 465 SER A 1940 REMARK 465 GLY A 1941 REMARK 465 VAL A 1942 REMARK 465 ASP A 1943 REMARK 465 LEU A 1944 REMARK 465 GLY A 1945 REMARK 465 THR A 1946 REMARK 465 GLU A 1947 REMARK 465 ASN A 1948 REMARK 465 LEU A 1949 REMARK 465 TYR A 1950 REMARK 465 PHE A 1951 REMARK 465 GLN A 1952 REMARK 465 SER A 1953 REMARK 465 MET B 1932 REMARK 465 HIS B 1933 REMARK 465 HIS B 1934 REMARK 465 HIS B 1935 REMARK 465 HIS B 1936 REMARK 465 HIS B 1937 REMARK 465 HIS B 1938 REMARK 465 SER B 1939 REMARK 465 SER B 1940 REMARK 465 GLY B 1941 REMARK 465 VAL B 1942 REMARK 465 ASP B 1943 REMARK 465 LEU B 1944 REMARK 465 GLY B 1945 REMARK 465 THR B 1946 REMARK 465 GLU B 1947 REMARK 465 ASN B 1948 REMARK 465 MET C 1932 REMARK 465 HIS C 1933 REMARK 465 HIS C 1934 REMARK 465 HIS C 1935 REMARK 465 HIS C 1936 REMARK 465 HIS C 1937 REMARK 465 HIS C 1938 REMARK 465 SER C 1939 REMARK 465 SER C 1940 REMARK 465 GLY C 1941 REMARK 465 VAL C 1942 REMARK 465 ASP C 1943 REMARK 465 LEU C 1944 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A1954 CG SD CE REMARK 470 LYS A1994 CG CD CE NZ REMARK 470 LYS A2033 CG CD CE NZ REMARK 470 LEU B1949 CG CD1 CD2 REMARK 470 TYR B1950 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B1977 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS B1981 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B1994 CG CD CE NZ REMARK 470 LYS B2033 CG CD CE NZ REMARK 470 GLU C1963 CD OE1 OE2 REMARK 470 LYS C1994 CG CD CE NZ REMARK 470 GLU C1999 CD OE1 OE2 REMARK 470 GLU C2023 CD OE1 OE2 REMARK 470 LYS C2033 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE B1951 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 PHE B1951 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A1985 -178.80 -66.30 REMARK 500 LYS A1994 -5.74 76.29 REMARK 500 LYS B1989 -65.88 -98.08 REMARK 500 LYS B1994 -12.26 77.57 REMARK 500 THR C1946 46.94 -81.39 REMARK 500 ASP C1967 41.32 -96.91 REMARK 500 LYS C1989 -64.66 -97.72 REMARK 500 LYS C1994 -8.24 78.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR C 1946 GLU C 1947 133.21 REMARK 500 REMARK 500 REMARK: NULL DBREF 2FNE A 1954 2042 UNP Q5VZ62 MPDZ_HUMAN 1 89 DBREF 2FNE B 1954 2042 UNP Q5VZ62 MPDZ_HUMAN 1 89 DBREF 2FNE C 1954 2042 UNP Q5VZ62 MPDZ_HUMAN 1 89 SEQADV 2FNE MET A 1932 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS A 1933 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS A 1934 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS A 1935 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS A 1936 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS A 1937 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS A 1938 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE SER A 1939 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE SER A 1940 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLY A 1941 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE VAL A 1942 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE ASP A 1943 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE LEU A 1944 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLY A 1945 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE THR A 1946 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLU A 1947 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE ASN A 1948 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE LEU A 1949 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE TYR A 1950 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE PHE A 1951 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLN A 1952 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE SER A 1953 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE SER A 2043 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE ASP A 2044 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLU A 2045 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE THR A 2046 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE SER A 2047 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE VAL A 2048 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE MET B 1932 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS B 1933 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS B 1934 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS B 1935 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS B 1936 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS B 1937 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS B 1938 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE SER B 1939 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE SER B 1940 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLY B 1941 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE VAL B 1942 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE ASP B 1943 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE LEU B 1944 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLY B 1945 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE THR B 1946 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLU B 1947 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE ASN B 1948 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE LEU B 1949 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE TYR B 1950 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE PHE B 1951 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLN B 1952 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE SER B 1953 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE SER B 2043 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE ASP B 2044 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLU B 2045 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE THR B 2046 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE SER B 2047 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE VAL B 2048 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE MET C 1932 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS C 1933 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS C 1934 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS C 1935 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS C 1936 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS C 1937 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE HIS C 1938 UNP Q5VZ62 EXPRESSION TAG SEQADV 2FNE SER C 1939 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE SER C 1940 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLY C 1941 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE VAL C 1942 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE ASP C 1943 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE LEU C 1944 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLY C 1945 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE THR C 1946 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLU C 1947 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE ASN C 1948 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE LEU C 1949 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE TYR C 1950 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE PHE C 1951 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLN C 1952 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE SER C 1953 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE SER C 2043 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE ASP C 2044 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE GLU C 2045 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE THR C 2046 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE SER C 2047 UNP Q5VZ62 CLONING ARTIFACT SEQADV 2FNE VAL C 2048 UNP Q5VZ62 CLONING ARTIFACT SEQRES 1 A 117 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 117 GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO GLN CYS SEQRES 3 A 117 LYS SER ILE THR LEU GLU ARG GLY PRO ASP GLY LEU GLY SEQRES 4 A 117 PHE SER ILE VAL GLY GLY TYR GLY SER PRO HIS GLY ASP SEQRES 5 A 117 LEU PRO ILE TYR VAL LYS THR VAL PHE ALA LYS GLY ALA SEQRES 6 A 117 ALA SER GLU ASP GLY ARG LEU LYS ARG GLY ASP GLN ILE SEQRES 7 A 117 ILE ALA VAL ASN GLY GLN SER LEU GLU GLY VAL THR HIS SEQRES 8 A 117 GLU GLU ALA VAL ALA ILE LEU LYS ARG THR LYS GLY THR SEQRES 9 A 117 VAL THR LEU MET VAL LEU SER SER ASP GLU THR SER VAL SEQRES 1 B 117 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 117 GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO GLN CYS SEQRES 3 B 117 LYS SER ILE THR LEU GLU ARG GLY PRO ASP GLY LEU GLY SEQRES 4 B 117 PHE SER ILE VAL GLY GLY TYR GLY SER PRO HIS GLY ASP SEQRES 5 B 117 LEU PRO ILE TYR VAL LYS THR VAL PHE ALA LYS GLY ALA SEQRES 6 B 117 ALA SER GLU ASP GLY ARG LEU LYS ARG GLY ASP GLN ILE SEQRES 7 B 117 ILE ALA VAL ASN GLY GLN SER LEU GLU GLY VAL THR HIS SEQRES 8 B 117 GLU GLU ALA VAL ALA ILE LEU LYS ARG THR LYS GLY THR SEQRES 9 B 117 VAL THR LEU MET VAL LEU SER SER ASP GLU THR SER VAL SEQRES 1 C 117 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 C 117 GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO GLN CYS SEQRES 3 C 117 LYS SER ILE THR LEU GLU ARG GLY PRO ASP GLY LEU GLY SEQRES 4 C 117 PHE SER ILE VAL GLY GLY TYR GLY SER PRO HIS GLY ASP SEQRES 5 C 117 LEU PRO ILE TYR VAL LYS THR VAL PHE ALA LYS GLY ALA SEQRES 6 C 117 ALA SER GLU ASP GLY ARG LEU LYS ARG GLY ASP GLN ILE SEQRES 7 C 117 ILE ALA VAL ASN GLY GLN SER LEU GLU GLY VAL THR HIS SEQRES 8 C 117 GLU GLU ALA VAL ALA ILE LEU LYS ARG THR LYS GLY THR SEQRES 9 C 117 VAL THR LEU MET VAL LEU SER SER ASP GLU THR SER VAL FORMUL 4 HOH *199(H2 O) HELIX 1 1 GLY A 1995 GLY A 2001 1 7 HELIX 2 2 THR A 2021 THR A 2032 1 12 HELIX 3 3 GLY B 1995 GLY B 2001 1 7 HELIX 4 4 THR B 2021 THR B 2032 1 12 HELIX 5 5 GLU C 1947 GLN C 1952 5 6 HELIX 6 6 GLY C 1995 GLY C 2001 1 7 HELIX 7 7 THR C 2021 ARG C 2031 1 11 SHEET 1 A 4 GLN A1956 LEU A1962 0 SHEET 2 A 4 VAL A2036 SER A2042 -1 O LEU A2038 N ILE A1960 SHEET 3 A 4 GLN A2008 VAL A2012 -1 N ILE A2010 O MET A2039 SHEET 4 A 4 GLN A2015 SER A2016 -1 O GLN A2015 N VAL A2012 SHEET 1 B 2 PHE A1971 SER A1979 0 SHEET 2 B 2 GLY A1982 VAL A1991 -1 O LYS A1989 N SER A1972 SHEET 1 C 3 THR A2046 VAL A2048 0 SHEET 2 C 3 PHE B1971 GLY B1976 -1 O PHE B1971 N VAL A2048 SHEET 3 C 3 LEU B1984 VAL B1991 -1 O LYS B1989 N SER B1972 SHEET 1 D 4 PRO B1955 LEU B1962 0 SHEET 2 D 4 VAL B2036 SER B2043 -1 O VAL B2036 N LEU B1962 SHEET 3 D 4 GLN B2008 VAL B2012 -1 N GLN B2008 O LEU B2041 SHEET 4 D 4 GLN B2015 SER B2016 -1 O GLN B2015 N VAL B2012 SHEET 1 E 3 THR B2046 VAL B2048 0 SHEET 2 E 3 PHE C1971 GLY C1975 -1 O PHE C1971 N VAL B2048 SHEET 3 E 3 ILE C1986 VAL C1991 -1 O LYS C1989 N SER C1972 SHEET 1 F 4 GLN C1956 GLU C1963 0 SHEET 2 F 4 THR C2035 SER C2042 -1 O VAL C2036 N LEU C1962 SHEET 3 F 4 GLN C2008 VAL C2012 -1 N GLN C2008 O LEU C2041 SHEET 4 F 4 GLN C2015 SER C2016 -1 O GLN C2015 N VAL C2012 CRYST1 47.943 62.380 53.128 90.00 106.26 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020858 0.000000 0.006083 0.00000 SCALE2 0.000000 0.016031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019607 0.00000