PDB Short entry for 2FUE HEADER ISOMERASE 26-JAN-06 2FUE TITLE HUMAN ALPHA-PHOSPHOMANNOMUTASE 1 WITH D-MANNOSE 1-PHOSPHATE AND MG2+ TITLE 2 COFACTOR BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOMANNOMUTASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PMM 1, PMMH-22; COMPND 5 EC: 5.4.2.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28B KEYWDS PHOSPHOMANNOMUTASE, ENZYME-PRODUCT COMPLEX, PROTEIN GLYCOSYLATION, KEYWDS 2 CARBOHYDRATE-DEFICIENT GLYCOPROTEIN SYNDROME, HALOALKANOIC ACID KEYWDS 3 DEHALOGENASE SUPERFAMILY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.R.SILVAGGI,C.ZHANG,Z.LU,D.DUNAWAY-MARIANO,K.N.ALLEN REVDAT 8 15-NOV-23 2FUE 1 REMARK REVDAT 7 30-AUG-23 2FUE 1 REMARK HETSYN REVDAT 6 29-JUL-20 2FUE 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE REVDAT 5 18-OCT-17 2FUE 1 REMARK REVDAT 4 13-JUL-11 2FUE 1 VERSN REVDAT 3 24-FEB-09 2FUE 1 VERSN REVDAT 2 07-NOV-06 2FUE 1 JRNL REVDAT 1 21-MAR-06 2FUE 0 JRNL AUTH N.R.SILVAGGI,C.ZHANG,Z.LU,J.DAI,D.DUNAWAY-MARIANO,K.N.ALLEN JRNL TITL THE X-RAY CRYSTAL STRUCTURES OF HUMAN JRNL TITL 2 ALPHA-PHOSPHOMANNOMUTASE 1 REVEAL THE STRUCTURAL BASIS OF JRNL TITL 3 CONGENITAL DISORDER OF GLYCOSYLATION TYPE 1A. JRNL REF J.BIOL.CHEM. V. 281 14918 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16540464 JRNL DOI 10.1074/JBC.M601505200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 27230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1464 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1478 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1973 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.13000 REMARK 3 B22 (A**2) : 1.13000 REMARK 3 B33 (A**2) : -2.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.585 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2011 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1435 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2712 ; 1.120 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3456 ; 0.813 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ; 5.673 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;33.570 ;23.402 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;11.544 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;12.796 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 296 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2244 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 440 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 410 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1504 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1010 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1026 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 177 ; 0.110 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.321 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1519 ; 0.648 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 506 ; 0.120 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1972 ; 0.731 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 860 ; 1.338 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 739 ; 1.849 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 90 REMARK 3 RESIDUE RANGE : A 198 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9353 8.1412 84.1124 REMARK 3 T TENSOR REMARK 3 T11: -0.0989 T22: -0.1265 REMARK 3 T33: -0.0688 T12: 0.0057 REMARK 3 T13: 0.0648 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.6213 L22: 2.4053 REMARK 3 L33: 2.7664 L12: 0.0055 REMARK 3 L13: -0.9385 L23: 0.7334 REMARK 3 S TENSOR REMARK 3 S11: -0.1021 S12: 0.0630 S13: -0.0582 REMARK 3 S21: 0.0363 S22: -0.0046 S23: 0.1964 REMARK 3 S31: 0.1510 S32: -0.1851 S33: 0.1067 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 32.1629 31.9524 97.6730 REMARK 3 T TENSOR REMARK 3 T11: -0.0794 T22: -0.0989 REMARK 3 T33: -0.1347 T12: 0.0000 REMARK 3 T13: 0.0254 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.7482 L22: 1.9521 REMARK 3 L33: 2.4289 L12: -0.1315 REMARK 3 L13: -0.4663 L23: 0.0140 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: 0.1477 S13: -0.0242 REMARK 3 S21: -0.1747 S22: 0.0554 S23: 0.0741 REMARK 3 S31: -0.1051 S32: 0.0197 S33: -0.0697 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 97 REMARK 3 RESIDUE RANGE : A 191 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 37.0481 15.0312 96.8167 REMARK 3 T TENSOR REMARK 3 T11: 0.0327 T22: -0.0171 REMARK 3 T33: -0.0173 T12: 0.0470 REMARK 3 T13: 0.0324 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 0.6530 L22: 3.3575 REMARK 3 L33: 1.8970 L12: 0.1476 REMARK 3 L13: 0.9858 L23: 1.3884 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.0493 S13: -0.1234 REMARK 3 S21: 0.3361 S22: 0.2571 S23: -0.2526 REMARK 3 S31: 0.3285 S32: 0.0684 S33: -0.2969 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28735 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 42.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.5 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: COOT REMARK 200 STARTING MODEL: PDB ENTRY 2FUC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS GROWN BY HANGING DROP VAPOR REMARK 280 DIFFUSION OVER MOTHER LIQUOR CONTAINING 15-18% POLYETHYLENE REMARK 280 GLYCOL 3350, 0.15M D,L-MALIC ACID, PH 7.0, 50MM MGCL2, AND 8MM 2- REMARK 280 MERCAPTOETHANOL. DROPS WERE FORMED BY MIXING 2UL OF PROTEIN REMARK 280 SOLUTION (10MM HEPES, PH 7.5, 100MM NACL, 5MM MGCL2) AT 15-25MG/ REMARK 280 ML WITH 2UL OF MOTHER LIQUOR. CRYSTALS GREW AFTER ONE TO THREE REMARK 280 DAYS AT 296 K. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.30150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.69500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.69500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 160.95225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.69500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.69500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.65075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.69500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.69500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 160.95225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.69500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.69500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.65075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.30150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS ONE MONOMER OF THE REMARK 300 BIOLOGICALLY ACTIVE DIMER. THE DIMER CAN BE GENERATED BY APPLYING REMARK 300 THE FOLLOWING MATRIX TO THE DEPOSITED COORDINATES: | 3.123E-17, 1, REMARK 300 5.881E-16| | 1,-1.745E-16, 1.109E-15| | 1.049E-15, 5.487E-16, -1| (- REMARK 300 7.416E-14,-1.349E-13, 216) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 214.60300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1007 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ARG A 9 REMARK 465 ARG A 10 REMARK 465 LYS A 11 REMARK 465 GLU A 12 REMARK 465 ALA A 259 REMARK 465 HIS A 260 REMARK 465 GLU A 261 REMARK 465 ALA A 262 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 58 CD CE NZ REMARK 480 GLU A 71 CG CD OE1 OE2 REMARK 480 GLN A 94 CG CD OE1 NE2 REMARK 480 ASN A 98 CG OD1 ND2 REMARK 480 GLU A 148 CG CD OE1 OE2 REMARK 480 ARG A 183 CD NE CZ NH1 NH2 REMARK 480 GLN A 207 CD OE1 NE2 REMARK 480 GLN A 248 CD OE1 NE2 REMARK 480 GLU A 257 CG CD OE1 OE2 REMARK 480 THR A 258 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 183 CG ARG A 183 CD -0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 183 CG - CD - NE ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 20 -64.53 -96.35 REMARK 500 ARG A 125 -106.76 -129.01 REMARK 500 ARG A 183 51.16 -106.06 REMARK 500 ASP A 197 -172.18 -68.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 19 OD2 REMARK 620 2 ASP A 21 O 89.5 REMARK 620 3 ASN A 218 OD1 86.2 86.7 REMARK 620 4 HOH A1236 O 92.5 97.2 175.8 REMARK 620 5 HOH A1237 O 92.7 172.6 86.4 89.7 REMARK 620 6 HOH A1238 O 173.2 85.3 89.3 92.4 92.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 168 OE1 REMARK 620 2 PHE A 230 O 89.3 REMARK 620 3 ASP A 232 O 109.8 120.0 REMARK 620 4 THR A 235 O 94.1 141.4 94.9 REMARK 620 5 THR A 235 OG1 163.8 88.1 85.2 78.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FUC RELATED DB: PDB REMARK 900 STRUCTURE OF UNLIGANDED FORM OF HUMAN PHOSPHOMANNOMUTASE 1 DBREF 2FUE A 1 262 UNP Q92871 PMM1_HUMAN 1 262 SEQADV 2FUE MSE A 1 UNP Q92871 MET 1 MODIFIED RESIDUE SEQADV 2FUE MSE A 116 UNP Q92871 MET 116 MODIFIED RESIDUE SEQADV 2FUE MSE A 135 UNP Q92871 MET 135 MODIFIED RESIDUE SEQADV 2FUE MSE A 186 UNP Q92871 MET 186 MODIFIED RESIDUE SEQRES 1 A 262 MSE ALA VAL THR ALA GLN ALA ALA ARG ARG LYS GLU ARG SEQRES 2 A 262 VAL LEU CYS LEU PHE ASP VAL ASP GLY THR LEU THR PRO SEQRES 3 A 262 ALA ARG GLN LYS ILE ASP PRO GLU VAL ALA ALA PHE LEU SEQRES 4 A 262 GLN LYS LEU ARG SER ARG VAL GLN ILE GLY VAL VAL GLY SEQRES 5 A 262 GLY SER ASP TYR CYS LYS ILE ALA GLU GLN LEU GLY ASP SEQRES 6 A 262 GLY ASP GLU VAL ILE GLU LYS PHE ASP TYR VAL PHE ALA SEQRES 7 A 262 GLU ASN GLY THR VAL GLN TYR LYS HIS GLY ARG LEU LEU SEQRES 8 A 262 SER LYS GLN THR ILE GLN ASN HIS LEU GLY GLU GLU LEU SEQRES 9 A 262 LEU GLN ASP LEU ILE ASN PHE CYS LEU SER TYR MSE ALA SEQRES 10 A 262 LEU LEU ARG LEU PRO LYS LYS ARG GLY THR PHE ILE GLU SEQRES 11 A 262 PHE ARG ASN GLY MSE LEU ASN ILE SER PRO ILE GLY ARG SEQRES 12 A 262 SER CYS THR LEU GLU GLU ARG ILE GLU PHE SER GLU LEU SEQRES 13 A 262 ASP LYS LYS GLU LYS ILE ARG GLU LYS PHE VAL GLU ALA SEQRES 14 A 262 LEU LYS THR GLU PHE ALA GLY LYS GLY LEU ARG PHE SER SEQRES 15 A 262 ARG GLY GLY MSE ILE SER PHE ASP VAL PHE PRO GLU GLY SEQRES 16 A 262 TRP ASP LYS ARG TYR CYS LEU ASP SER LEU ASP GLN ASP SEQRES 17 A 262 SER PHE ASP THR ILE HIS PHE PHE GLY ASN GLU THR SER SEQRES 18 A 262 PRO GLY GLY ASN ASP PHE GLU ILE PHE ALA ASP PRO ARG SEQRES 19 A 262 THR VAL GLY HIS SER VAL VAL SER PRO GLN ASP THR VAL SEQRES 20 A 262 GLN ARG CYS ARG GLU ILE PHE PHE PRO GLU THR ALA HIS SEQRES 21 A 262 GLU ALA MODRES 2FUE MSE A 116 MET SELENOMETHIONINE MODRES 2FUE MSE A 135 MET SELENOMETHIONINE MODRES 2FUE MSE A 186 MET SELENOMETHIONINE HET MSE A 116 8 HET MSE A 135 8 HET MSE A 186 13 HET M1P A 400 16 HET MG A 500 1 HET MG A 501 1 HETNAM MSE SELENOMETHIONINE HETNAM M1P 1-O-PHOSPHONO-ALPHA-D-MANNOPYRANOSE HETNAM MG MAGNESIUM ION HETSYN M1P ALPHA-D-MANNOSE 1-PHOSPHATE; 1-O-PHOSPHONO-ALPHA-D- HETSYN 2 M1P MANNOSE; 1-O-PHOSPHONO-D-MANNOSE; 1-O-PHOSPHONO- HETSYN 3 M1P MANNOSE FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 M1P C6 H13 O9 P FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *238(H2 O) HELIX 1 1 ASP A 32 ARG A 43 1 12 HELIX 2 2 ASP A 55 GLY A 64 1 10 HELIX 3 3 GLU A 68 PHE A 73 1 6 HELIX 4 4 GLU A 79 THR A 82 5 4 HELIX 5 5 THR A 95 GLY A 101 1 7 HELIX 6 6 GLY A 101 LEU A 118 1 18 HELIX 7 7 THR A 146 LYS A 161 1 16 HELIX 8 8 LYS A 161 PHE A 174 1 14 HELIX 9 9 ASP A 197 TYR A 200 5 4 HELIX 10 10 CYS A 201 ASP A 206 1 6 HELIX 11 11 ASP A 226 ASP A 232 1 7 HELIX 12 12 SER A 242 PHE A 255 1 14 SHEET 1 A 7 ARG A 89 LEU A 90 0 SHEET 2 A 7 VAL A 83 LYS A 86 -1 N LYS A 86 O ARG A 89 SHEET 3 A 7 TYR A 75 ALA A 78 -1 N VAL A 76 O TYR A 85 SHEET 4 A 7 GLN A 47 VAL A 51 1 N VAL A 50 O PHE A 77 SHEET 5 A 7 VAL A 14 ASP A 19 1 N CYS A 16 O GLN A 47 SHEET 6 A 7 THR A 212 GLY A 217 1 O HIS A 214 N LEU A 17 SHEET 7 A 7 VAL A 236 SER A 239 1 O VAL A 236 N ILE A 213 SHEET 1 B 4 ILE A 129 PHE A 131 0 SHEET 2 B 4 LEU A 136 ILE A 138 -1 O ASN A 137 N GLU A 130 SHEET 3 B 4 PHE A 189 PRO A 193 -1 O PHE A 189 N ILE A 138 SHEET 4 B 4 LEU A 179 SER A 182 -1 N ARG A 180 O PHE A 192 LINK C TYR A 115 N MSE A 116 1555 1555 1.33 LINK C MSE A 116 N ALA A 117 1555 1555 1.33 LINK C GLY A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N LEU A 136 1555 1555 1.33 LINK C GLY A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N ILE A 187 1555 1555 1.33 LINK OD2 ASP A 19 MG MG A 500 1555 1555 2.03 LINK O ASP A 21 MG MG A 500 1555 1555 2.12 LINK OE1 GLU A 168 MG MG A 501 5645 1555 2.43 LINK OD1 ASN A 218 MG MG A 500 1555 1555 2.06 LINK O PHE A 230 MG MG A 501 1555 1555 2.34 LINK O ASP A 232 MG MG A 501 1555 1555 2.23 LINK O THR A 235 MG MG A 501 1555 1555 2.32 LINK OG1 THR A 235 MG MG A 501 1555 1555 2.32 LINK MG MG A 500 O HOH A1236 1555 1555 2.04 LINK MG MG A 500 O HOH A1237 1555 1555 2.03 LINK MG MG A 500 O HOH A1238 1555 1555 2.18 CRYST1 51.390 51.390 214.603 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019459 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004660 0.00000