PDB Short entry for 2FYJ
HEADER    PROTEIN BINDING                         08-FEB-06   2FYJ              
TITLE     NMR SOLUTION STRUCTURE OF CALCIUM-LOADED LRP DOUBLE MODULE            
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 1;        
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: LRP, ALPHA-2-MACROGLOBULIN RECEPTOR;                        
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: LRP1;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PT7                                       
KEYWDS    DOUBLE MODULE, COMPLEMENT TYPE REPEAT, CALCIUM, BETA-2 HAIRPIN, LOOP- 
KEYWDS   2 STRUCTURES, PROTEIN BINDING                                          
EXPDTA    SOLUTION NMR                                                          
NUMMDL    15                                                                    
AUTHOR    G.A.JENSEN,O.M.ANDERSEN,A.M.BONVIN,I.BJERRUM-BOHR,M.ETZERODT,         
AUTHOR   2 C.O'SHEA,F.M.POULSEN,B.B.KRAGELUND                                   
REVDAT   3   09-MAR-22 2FYJ    1       REMARK                                   
REVDAT   2   24-FEB-09 2FYJ    1       VERSN                                    
REVDAT   1   10-OCT-06 2FYJ    0                                                
JRNL        AUTH   G.A.JENSEN,O.M.ANDERSEN,A.M.BONVIN,I.BJERRUM-BOHR,           
JRNL        AUTH 2 M.ETZERODT,C.O'SHEA,F.M.POULSEN,B.B.KRAGELUND                
JRNL        TITL   BINDING SITE STRUCTURE OF ONE LRP-RAP COMPLEX:IMPLICATIONS   
JRNL        TITL 2 FOR A COMMON LIGAND-RECEPTOR BINDING MOTIF.                  
JRNL        REF    J.MOL.BIOL.                   V. 362   700 2006              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   16938309                                                     
JRNL        DOI    10.1016/J.JMB.2006.07.013                                    
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   P.R.NIELSEN,L.ELLGAARD,M.ETZERODT,H.C.THOGERSEN,F.M.POULSEN  
REMARK   1  TITL   THE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF           
REMARK   1  TITL 2 ALPHA2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN.            
REMARK   1  REF    PROC.NATL.ACAD.SCI.USA        V.  94  7521 1997              
REMARK   1  REFN                   ISSN 0027-8424                               
REMARK   1  PMID   9207124                                                      
REMARK   1  DOI    10.1073/PNAS.94.14.7521                                      
REMARK   1 REFERENCE 2                                                          
REMARK   1  AUTH   O.M.ANDERSEN,L.L.CHRISTENSEN,P.A.CHRSITENSEN,E.S.SORENSEN,   
REMARK   1  AUTH 2 C.JAKOBSEN,S.K.MOESTRUP,M.ETZERODT,H.C.THOGERSEN             
REMARK   1  TITL   IDENTIFICATION OF THE MINIMAL FUNCTIONAL UNIT IN THE LOW     
REMARK   1  TITL 2 DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN FOR BINDING THE 
REMARK   1  TITL 3 RECEPTOR-ASSOCIATED PROTEIN (RAP). A CONSERVED ACIDIC        
REMARK   1  TITL 4 RESIDUE IN THE COMPLEMENT-TYPE REPEATS IS IMPORTANT FOR      
REMARK   1  TITL 5 RECOGNITION OF RAP                                           
REMARK   1  REF    J.BIOL.CHEM.                  V. 275 21017 2000              
REMARK   1  REFN                   ISSN 0021-9258                               
REMARK   1  PMID   10747921                                                     
REMARK   1  DOI    10.1074/JBC.M000507200                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NMRPIPE, CNS                                         
REMARK   3   AUTHORS     : DELAGLIO (NMRPIPE),                                  
REMARK   3  BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,   
REMARK   3  NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS)                       
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2FYJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000036463.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298; 298                           
REMARK 210  PH                             : 7.0; 7.0                           
REMARK 210  IONIC STRENGTH                 : NULL; NULL                         
REMARK 210  PRESSURE                       : AMBIENT; AMBIENT                   
REMARK 210  SAMPLE CONTENTS                : 0.5MM [U-99% 15N]-CR56; 0.5MM      
REMARK 210                                   CR56                               
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D NOESY; 2D TOCSY; 3D_15N         
REMARK 210                                   -SEPARATED_NOESY; DQF-COSY; 3D-    
REMARK 210                                   15N-SEPARATED_TOCSY; 15N,1H-HSQC   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 750 MHZ; 800 MHZ                   
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : X-PLOR NIH, CNS, PRONTO3D          
REMARK 210                                   20020517                           
REMARK 210   METHOD USED                   : SIMMULATED ANNEALING USING XPLOR   
REMARK 210                                   -NIH, REFINEMENT IN EXPLICIT       
REMARK 210                                   WATER LAYER USING CNS              
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 15                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : LOWEST ENERGY, FEWEST VIOLATIONS   
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500  HD11  ILE A    59    HD21  ASN A    69              1.23            
REMARK 500   H    PHE A    10     O    ILE A    18              1.58            
REMARK 500  HH12  ARG A    16     OD2  ASP A    29              1.59            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ARG A   3      -76.55     70.11                                   
REMARK 500  1 THR A   4      -67.66   -164.73                                   
REMARK 500  1 CYS A  12      -93.28    -58.09                                   
REMARK 500  1 ALA A  13       35.90    -75.82                                   
REMARK 500  1 SER A  14      -47.53     67.74                                   
REMARK 500  1 SER A  21      -26.28    147.24                                   
REMARK 500  1 LEU A  26       82.38     78.39                                   
REMARK 500  1 ASP A  27      -66.73     77.60                                   
REMARK 500  1 ASP A  29      -71.32    -64.91                                   
REMARK 500  1 ASP A  32      -39.25    171.06                                   
REMARK 500  1 SER A  39      -44.50   -168.92                                   
REMARK 500  1 ALA A  41       39.83   -147.62                                   
REMARK 500  1 THR A  44       22.95   -143.48                                   
REMARK 500  1 CYS A  45      -85.22     65.15                                   
REMARK 500  1 LEU A  48      -66.52    -97.22                                   
REMARK 500  1 THR A  49       86.78   -168.62                                   
REMARK 500  1 ASN A  67      -37.07   -179.51                                   
REMARK 500  1 ASP A  68     -166.13   -107.96                                   
REMARK 500  1 ASP A  70      123.89    -39.77                                   
REMARK 500  1 CYS A  71      -56.97   -140.85                                   
REMARK 500  1 ASP A  73      -78.83   -161.05                                   
REMARK 500  1 ASN A  74       19.67   -156.46                                   
REMARK 500  1 SER A  75      -97.04    -90.32                                   
REMARK 500  1 GLU A  77      -20.14   -179.69                                   
REMARK 500  1 ALA A  78       21.17     88.40                                   
REMARK 500  1 CYS A  80       93.42    -66.19                                   
REMARK 500  2 ARG A   3      -27.13    174.75                                   
REMARK 500  2 CYS A  12     -157.82    -73.21                                   
REMARK 500  2 ALA A  13       89.29    -63.02                                   
REMARK 500  2 SER A  14       76.66     40.10                                   
REMARK 500  2 THR A  23     -162.08    -79.22                                   
REMARK 500  2 CYS A  24       99.89    -28.41                                   
REMARK 500  2 ASP A  25      -90.39   -141.55                                   
REMARK 500  2 CYS A  30       34.58   -141.93                                   
REMARK 500  2 ASP A  32      -41.15    174.35                                   
REMARK 500  2 SER A  34      -29.30     73.66                                   
REMARK 500  2 SER A  37       13.15   -143.01                                   
REMARK 500  2 ALA A  38      -31.31   -141.72                                   
REMARK 500  2 CYS A  40       95.83    -61.39                                   
REMARK 500  2 ALA A  41       41.31   -148.16                                   
REMARK 500  2 PHE A  46       95.27   -171.03                                   
REMARK 500  2 LEU A  48      -53.61   -151.90                                   
REMARK 500  2 THR A  49       79.28   -169.51                                   
REMARK 500  2 ASN A  62       36.86    -94.09                                   
REMARK 500  2 ARG A  64       95.71    -68.99                                   
REMARK 500  2 ASP A  66      -74.46   -164.13                                   
REMARK 500  2 ASN A  67      -79.70    -87.82                                   
REMARK 500  2 ASP A  68     -151.40   -122.33                                   
REMARK 500  2 CYS A  71      -56.07   -148.45                                   
REMARK 500  2 GLU A  77      -20.86    161.79                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     378 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 5961   RELATED DB: BMRB                                  
REMARK 900 CHEMICAL SHIFT ASSIGNMENTS                                           
REMARK 900 RELATED ID: 2FYL   RELATED DB: PDB                                   
REMARK 900 HADDOCK MODEL OF COMPLEX BETWEEN THIS STRUCTURE (CR56) AND RAP       
REMARK 900 DOMAIN 1                                                             
REMARK 900 RELATED ID: 1LRE   RELATED DB: PDB                                   
REMARK 900 RAP DOMAIN 1                                                         
DBREF  2FYJ A    1    82  UNP    Q07954   LRP1_HUMAN     932   1013             
SEQRES   1 A   82  SER ALA ARG THR CYS PRO PRO ASN GLN PHE SER CYS ALA          
SEQRES   2 A   82  SER GLY ARG CYS ILE PRO ILE SER TRP THR CYS ASP LEU          
SEQRES   3 A   82  ASP ASP ASP CYS GLY ASP ARG SER ASP GLU SER ALA SER          
SEQRES   4 A   82  CYS ALA TYR PRO THR CYS PHE PRO LEU THR GLN PHE THR          
SEQRES   5 A   82  CYS ASN ASN GLY ARG CYS ILE ASN ILE ASN TRP ARG CYS          
SEQRES   6 A   82  ASP ASN ASP ASN ASP CYS GLY ASP ASN SER ASP GLU ALA          
SEQRES   7 A   82  GLY CYS SER HIS                                              
SHEET    1   A 2 GLN A   9  SER A  11  0                                        
SHEET    2   A 2 CYS A  17  PRO A  19 -1  O  ILE A  18   N  PHE A  10           
SHEET    1   B 2 GLN A  50  THR A  52  0                                        
SHEET    2   B 2 CYS A  58  ASN A  60 -1  O  ILE A  59   N  PHE A  51           
SSBOND   1 CYS A    5    CYS A   17                          1555   1555  2.03  
SSBOND   2 CYS A   12    CYS A   30                          1555   1555  2.03  
SSBOND   3 CYS A   24    CYS A   40                          1555   1555  2.03  
SSBOND   4 CYS A   45    CYS A   58                          1555   1555  2.02  
SSBOND   5 CYS A   53    CYS A   71                          1555   1555  2.03  
SSBOND   6 CYS A   65    CYS A   80                          1555   1555  2.03  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000