PDB Short entry for 2G4K HEADER HYDROLASE 22-FEB-06 2G4K TITLE ANOMALOUS SUBSTRUCTURE OF HUMAN ADP-RIBOSYLHYDROLASE 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLHYDROLASE 3; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS ADP-RIBOSYLHYDROLASE 3, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MUELLER-DIECKMANN,M.S.WEISS REVDAT 5 14-FEB-24 2G4K 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2G4K 1 VERSN REVDAT 3 24-FEB-09 2G4K 1 VERSN REVDAT 2 20-MAR-07 2G4K 1 JRNL REVDAT 1 20-FEB-07 2G4K 0 JRNL AUTH C.MUELLER-DIECKMANN,S.PANJIKAR,A.SCHMIDT,S.MUELLER,J.KUPER, JRNL AUTH 2 A.GEERLOF,M.WILMANNS,R.K.SINGH,P.A.TUCKER,M.S.WEISS JRNL TITL ON THE ROUTINE USE OF SOFT X-RAYS IN MACROMOLECULAR JRNL TITL 2 CRYSTALLOGRAPHY. PART IV. EFFICIENT DETERMINATION OF JRNL TITL 3 ANOMALOUS SUBSTRUCTURES IN BIOMACROMOLECULES USING LONGER JRNL TITL 4 X-RAY WAVELENGTHS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 366 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17327674 JRNL DOI 10.1107/S0907444906055624 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 28683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 595 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1997 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.4170 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.5570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2593 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : 1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.196 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2656 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2385 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3593 ; 1.965 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5548 ; 0.991 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 5.816 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;36.064 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;14.806 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;23.218 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3026 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 543 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 694 ; 0.249 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2382 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1348 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1443 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 139 ; 0.222 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.057 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.290 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.285 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.097 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2160 ; 1.701 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 700 ; 0.437 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2682 ; 2.181 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1110 ; 5.266 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 908 ; 7.043 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 347 REMARK 3 ORIGIN FOR THE GROUP (A): 46.9945 6.4301 20.0347 REMARK 3 T TENSOR REMARK 3 T11: -0.1488 T22: -0.1417 REMARK 3 T33: -0.1281 T12: -0.0098 REMARK 3 T13: -0.0207 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.0661 L22: 1.8994 REMARK 3 L33: 2.0932 L12: 0.2113 REMARK 3 L13: -0.2044 L23: -0.1125 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.1002 S13: 0.0432 REMARK 3 S21: -0.1067 S22: 0.0183 S23: 0.0841 REMARK 3 S31: 0.0336 S32: 0.0069 S33: 0.0120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29278 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FFT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.51500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.35500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.35500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.51500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 47 REMARK 465 THR A 48 REMARK 465 PRO A 49 REMARK 465 GLY A 50 REMARK 465 SER A 51 REMARK 465 GLU A 52 REMARK 465 ARG A 53 REMARK 465 THR A 54 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 253 O HOH A 380 1.12 REMARK 500 CG ASN A 253 O HOH A 380 1.97 REMARK 500 OD1 ASP A 95 O HOH A 368 1.98 REMARK 500 OE1 GLU A 223 O HOH A 468 2.18 REMARK 500 CB SER A 34 O HOH A 467 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 332 CG GLU A 332 CD 0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 124 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 153 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 270 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 60 -164.14 -112.17 REMARK 500 ALA A 78 161.38 179.07 REMARK 500 CYS A 116 96.38 -64.70 REMARK 500 GLU A 222 17.23 37.99 REMARK 500 GLU A 223 171.54 69.89 REMARK 500 ARG A 224 59.01 36.40 REMARK 500 ASN A 253 37.70 -149.45 REMARK 500 SER A 260 -43.27 -132.78 REMARK 500 LYS A 346 -75.52 -24.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 352 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 25 OE2 REMARK 620 2 ASP A 298 OD1 95.9 REMARK 620 3 ASP A 300 OD1 83.1 90.7 REMARK 620 4 THR A 301 OG1 173.1 89.5 92.5 REMARK 620 5 HOH A 355 O 90.3 166.7 101.7 85.3 REMARK 620 6 HOH A 356 O 95.2 86.5 176.6 89.4 81.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 351 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 60 OG1 REMARK 620 2 ASP A 61 OD1 89.3 REMARK 620 3 ASP A 62 OD2 82.4 87.0 REMARK 620 4 ASP A 300 OD2 86.0 174.5 95.3 REMARK 620 5 HOH A 355 O 166.3 94.1 84.5 91.1 REMARK 620 6 HOH A 357 O 97.2 86.3 173.3 91.4 96.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 354 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G4H RELATED DB: PDB REMARK 900 RELATED ID: 2G4I RELATED DB: PDB REMARK 900 RELATED ID: 2G4J RELATED DB: PDB REMARK 900 RELATED ID: 2G4L RELATED DB: PDB REMARK 900 RELATED ID: 2G4M RELATED DB: PDB REMARK 900 RELATED ID: 2G4N RELATED DB: PDB REMARK 900 RELATED ID: 2G4O RELATED DB: PDB REMARK 900 RELATED ID: 2G4P RELATED DB: PDB REMARK 900 RELATED ID: 2G4Q RELATED DB: PDB REMARK 900 RELATED ID: 2G4R RELATED DB: PDB REMARK 900 RELATED ID: 2G4S RELATED DB: PDB REMARK 900 RELATED ID: 2G4T RELATED DB: PDB REMARK 900 RELATED ID: 2G4U RELATED DB: PDB REMARK 900 RELATED ID: 2G4V RELATED DB: PDB REMARK 900 RELATED ID: 2G4W RELATED DB: PDB REMARK 900 RELATED ID: 2G4X RELATED DB: PDB REMARK 900 RELATED ID: 2G4Y RELATED DB: PDB REMARK 900 RELATED ID: 2G4Z RELATED DB: PDB REMARK 900 RELATED ID: 2G51 RELATED DB: PDB REMARK 900 RELATED ID: 2G52 RELATED DB: PDB REMARK 900 RELATED ID: 2G55 RELATED DB: PDB DBREF 2G4K A 2 347 GB 12313907 CAC21453 18 363 SEQADV 2G4K MET A 1 GB 12313907 INITIATING METHIONINE SEQRES 1 A 347 MET ARG SER LEU SER ARG PHE ARG GLY CYS LEU ALA GLY SEQRES 2 A 347 ALA LEU LEU GLY ASP CYS VAL GLY SER PHE TYR GLU ALA SEQRES 3 A 347 HIS ASP THR VAL ASP LEU THR SER VAL LEU ARG HIS VAL SEQRES 4 A 347 GLN SER LEU GLU PRO ASP PRO GLY THR PRO GLY SER GLU SEQRES 5 A 347 ARG THR GLU ALA LEU TYR TYR THR ASP ASP THR ALA MET SEQRES 6 A 347 ALA ARG ALA LEU VAL GLN SER LEU LEU ALA LYS GLU ALA SEQRES 7 A 347 PHE ASP GLU VAL ASP MET ALA HIS ARG PHE ALA GLN GLU SEQRES 8 A 347 TYR LYS LYS ASP PRO ASP ARG GLY TYR GLY ALA GLY VAL SEQRES 9 A 347 VAL THR VAL PHE LYS LYS LEU LEU ASN PRO LYS CYS ARG SEQRES 10 A 347 ASP VAL PHE GLU PRO ALA ARG ALA GLN PHE ASN GLY LYS SEQRES 11 A 347 GLY SER TYR GLY ASN GLY GLY ALA MET ARG VAL ALA GLY SEQRES 12 A 347 ILE SER LEU ALA TYR SER SER VAL GLN ASP VAL GLN LYS SEQRES 13 A 347 PHE ALA ARG LEU SER ALA GLN LEU THR HIS ALA SER SER SEQRES 14 A 347 LEU GLY TYR ASN GLY ALA ILE LEU GLN ALA LEU ALA VAL SEQRES 15 A 347 HIS LEU ALA LEU GLN GLY GLU SER SER SER GLU HIS PHE SEQRES 16 A 347 LEU LYS GLN LEU LEU GLY HIS MET GLU ASP LEU GLU GLY SEQRES 17 A 347 ASP ALA GLN SER VAL LEU ASP ALA ARG GLU LEU GLY MET SEQRES 18 A 347 GLU GLU ARG PRO TYR SER SER ARG LEU LYS LYS ILE GLY SEQRES 19 A 347 GLU LEU LEU ASP GLN ALA SER VAL THR ARG GLU GLU VAL SEQRES 20 A 347 VAL SER GLU LEU GLY ASN GLY ILE ALA ALA PHE GLU SER SEQRES 21 A 347 VAL PRO THR ALA ILE TYR CYS PHE LEU ARG CYS MET GLU SEQRES 22 A 347 PRO ASP PRO GLU ILE PRO SER ALA PHE ASN SER LEU GLN SEQRES 23 A 347 ARG THR LEU ILE TYR SER ILE SER LEU GLY GLY ASP THR SEQRES 24 A 347 ASP THR ILE ALA THR MET ALA GLY ALA ILE ALA GLY ALA SEQRES 25 A 347 TYR TYR GLY MET ASP GLN VAL PRO GLU SER TRP GLN GLN SEQRES 26 A 347 SER CYS GLU GLY TYR GLU GLU THR ASP ILE LEU ALA GLN SEQRES 27 A 347 SER LEU HIS ARG VAL PHE GLN LYS SER HET MG A 351 1 HET MG A 352 1 HET CL A 353 1 HET CL A 354 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 MG 2(MG 2+) FORMUL 4 CL 2(CL 1-) FORMUL 6 HOH *125(H2 O) HELIX 1 1 ARG A 2 SER A 22 1 21 HELIX 2 2 PHE A 23 GLU A 25 5 3 HELIX 3 3 ASP A 31 SER A 41 1 11 HELIX 4 4 THR A 60 GLU A 77 1 18 HELIX 5 5 ASP A 80 ASP A 95 1 16 HELIX 6 6 GLY A 101 LEU A 112 1 12 HELIX 7 7 PHE A 120 GLN A 126 1 7 HELIX 8 8 ASN A 135 ARG A 140 1 6 HELIX 9 9 VAL A 141 TYR A 148 1 8 HELIX 10 10 SER A 150 LEU A 164 1 15 HELIX 11 11 SER A 168 LEU A 186 1 19 HELIX 12 12 SER A 191 GLU A 207 1 17 HELIX 13 13 ASP A 209 LEU A 219 1 11 HELIX 14 14 ARG A 224 ASP A 238 1 15 HELIX 15 15 THR A 243 LEU A 251 1 9 HELIX 16 16 ALA A 256 GLU A 259 5 4 HELIX 17 17 SER A 260 CYS A 271 1 12 HELIX 18 18 ASN A 283 SER A 294 1 12 HELIX 19 19 ASP A 298 GLY A 315 1 18 HELIX 20 20 MET A 316 VAL A 319 5 4 HELIX 21 21 PRO A 320 SER A 326 1 7 HELIX 22 22 GLY A 329 GLN A 345 1 17 LINK OE2 GLU A 25 MG MG A 352 1555 1555 2.07 LINK OG1 THR A 60 MG MG A 351 1555 1555 2.25 LINK OD1 ASP A 61 MG MG A 351 1555 1555 2.05 LINK OD2 ASP A 62 MG MG A 351 1555 1555 2.09 LINK OD1 ASP A 298 MG MG A 352 1555 1555 2.12 LINK OD2 ASP A 300 MG MG A 351 1555 1555 1.93 LINK OD1 ASP A 300 MG MG A 352 1555 1555 2.10 LINK OG1 THR A 301 MG MG A 352 1555 1555 2.14 LINK MG MG A 351 O HOH A 355 1555 1555 2.15 LINK MG MG A 351 O HOH A 357 1555 1555 1.99 LINK MG MG A 352 O HOH A 355 1555 1555 2.16 LINK MG MG A 352 O HOH A 356 1555 1555 2.06 SITE 1 AC1 6 THR A 60 ASP A 61 ASP A 62 ASP A 300 SITE 2 AC1 6 HOH A 355 HOH A 357 SITE 1 AC2 6 GLU A 25 ASP A 298 ASP A 300 THR A 301 SITE 2 AC2 6 HOH A 355 HOH A 356 SITE 1 AC3 1 GLN A 211 SITE 1 AC4 2 SER A 5 ARG A 8 CRYST1 57.030 59.340 98.710 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017535 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010131 0.00000