PDB Short entry for 2G7W HEADER TRANSCRIPTION/DNA 01-MAR-06 2G7W TITLE HOMOLOGY MODEL OF THE CARBOXY TERMINAL REGION OF HUMAN TITLE 2 WILM'S TUMOR PROTEIN, WT1 (LYS371 TO ALA MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: WILMS' TUMOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WT1; COMPND 5 SYNONYM: WT33; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3'; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 MOL_ID: 3; SOURCE 7 SYNTHETIC: YES KEYWDS WILM'S TUMOR PROTEIN, TUMOR SUPPRESSOR PROTEIN, WT1 EXPDTA THEORETICAL MODEL AUTHOR R.KHURSHID,A.SALIM,A.ABBASI REVDAT 1 14-MAR-06 2G7W 0 JRNL AUTH R.KHURSHID,A.SALIM,A.ABBASI JRNL TITL HOMOLOGY MODEL OF THE CARBOXY TERMINAL REGION OF JRNL TITL 2 HUMAN WILM'S TUMOR PROTEIN, WT1: STUDY OF JRNL TITL 3 IMPORTANT RESIDUES IMPLICATED IN DNA BINDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELLER 4 REMARK 3 AUTHORS : SALI, A. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2G7W COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-2006. REMARK 100 THE RCSB ID CODE IS RCSB036799. REMARK 105 REMARK 105 THE PROTEIN DATA BANK HAS ADOPTED THE SACCHARIDE CHEMISTS REMARK 105 NOMENCLATURE FOR ATOMS OF THE DEOXYRIBOSE/RIBOSE MOIETY REMARK 105 RATHER THAN THAT OF THE NUCLEOSIDE CHEMISTS. THE RING REMARK 105 OXYGEN ATOM IS LABELLED O4* INSTEAD OF O1*. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 CA THR A 408 O HOH 93 0.67 REMARK 500 NH1 ARG A 344 O HOH 28 0.75 REMARK 500 C3* G B 7 NH2 ARG A 361 0.77 REMARK 500 C4* G B 7 NH2 ARG A 361 0.79 REMARK 500 O GLY A 348 O HOH 128 1.06 REMARK 500 NZ LYS A 350 O HOH 3 1.07 REMARK 500 C5M T C 51 OD1 ASP A 367 1.08 REMARK 500 NE ARG A 440 O HOH 116 1.13 REMARK 500 CZ ARG A 440 O HOH 116 1.13 REMARK 500 C5* G B 7 NH1 ARG A 361 1.15 REMARK 500 O4 T B 5 NH2 ARG A 426 1.19 REMARK 500 NH1 ARG A 371 O HOH 36 1.19 REMARK 500 N6 A C 52 NH1 ARG A 365 1.22 REMARK 500 OD1 ASP A 358 O HOH 147 1.22 REMARK 500 N TRP A 417 O HOH 23 1.28 REMARK 500 C5* G B 7 CZ ARG A 361 1.29 REMARK 500 CG ASP A 358 O HOH 147 1.31 REMARK 500 CD ARG A 371 O HOH 78 1.33 REMARK 500 NZ LYS A 423 O HOH 84 1.36 REMARK 500 NH2 ARG A 440 O HOH 116 1.40 REMARK 500 C6 T C 51 OD2 ASP A 367 1.41 REMARK 500 C4* G B 7 CZ ARG A 361 1.45 REMARK 500 CE LYS A 350 O HOH 3 1.46 REMARK 500 N THR A 408 O HOH 93 1.48 REMARK 500 CD LYS A 398 O HOH 146 1.51 REMARK 500 SG CYS A 354 ZN ZN 201 1.52 REMARK 500 OD2 ASP A 358 O HOH 147 1.53 REMARK 500 SG CYS A 420 ZN ZN 203 1.53 REMARK 500 N7 G B 2 NH1 ARG A 432 1.54 REMARK 500 CZ ARG A 344 O HOH 28 1.58 REMARK 500 CE LYS A 350 O HOH 148 1.60 REMARK 500 O THR A 408 O HOH 72 1.60 REMARK 500 NH2 ARG A 371 O HOH 2 1.61 REMARK 500 N6 A C 52 CZ ARG A 365 1.64 REMARK 500 CE LYS A 398 O HOH 146 1.69 REMARK 500 CA SER A 409 O HOH 72 1.69 REMARK 500 N3 A B 1 NH2 ARG A 432 1.70 REMARK 500 CB THR A 408 O HOH 93 1.74 REMARK 500 C4 A B 1 NH2 ARG A 432 1.76 REMARK 500 O3* G B 7 NH2 ARG A 361 1.76 REMARK 500 CA TRP A 417 O HOH 23 1.76 REMARK 500 CG ARG A 371 O HOH 78 1.80 REMARK 500 CE LYS A 398 O HOH 47 1.80 REMARK 500 C THR A 408 O HOH 72 1.84 REMARK 500 C5* G B 7 NH2 ARG A 361 1.85 REMARK 500 C5 T C 51 OD2 ASP A 367 1.86 REMARK 500 CD LYS A 350 O HOH 148 1.87 REMARK 500 N SER A 409 O HOH 72 1.87 REMARK 500 CD LYS A 350 O HOH 3 1.89 REMARK 500 C2 A B 1 NH2 ARG A 432 1.92 REMARK 500 C4* G B 7 NH1 ARG A 361 1.94 REMARK 500 C3* G B 7 CZ ARG A 361 1.94 REMARK 500 O2P G B 7 ND1 HIS A 372 1.95 REMARK 500 NZ LYS A 398 O HOH 146 1.97 REMARK 500 CG2 THR A 405 O HOH 71 1.97 REMARK 500 O4* G B 7 NH2 ARG A 361 1.98 REMARK 500 C2* G B 7 NH2 ARG A 361 1.98 REMARK 500 C5 C B 9 NE2 GLN A 368 1.98 REMARK 500 O GLU A 429 O HOH 21 1.99 REMARK 500 CB TRP A 417 O HOH 23 2.00 REMARK 500 C5 T C 51 OD1 ASP A 367 2.01 REMARK 500 N ARG A 362 O HOH 29 2.01 REMARK 500 CE1 PHE A 363 O HOH 33 2.01 REMARK 500 CE2 PHE A 413 O HOH 13 2.01 REMARK 500 N TRP A 417 O HOH 82 2.01 REMARK 500 N7 G B 4 NH1 ARG A 426 2.02 REMARK 500 C4 T C 51 NH2 ARG A 365 2.02 REMARK 500 C5M T C 51 CG ASP A 367 2.06 REMARK 500 O ASP A 355 O HOH 137 2.06 REMARK 500 C LYS A 407 O HOH 93 2.06 REMARK 500 C4 T B 5 NH2 ARG A 426 2.07 REMARK 500 N6 A C 52 NH2 ARG A 365 2.07 REMARK 500 C SER A 409 O HOH 72 2.07 REMARK 500 OG SER A 414 O HOH 120 2.07 REMARK 500 C THR A 408 O HOH 93 2.08 REMARK 500 N SER A 414 O HOH 120 2.08 REMARK 500 CB ASP A 428 O HOH 56 2.08 REMARK 500 CB VAL A 431 O HOH 22 2.08 REMARK 500 CG2 THR A 347 O HOH 39 2.09 REMARK 500 CG GLU A 410 O HOH 71 2.09 REMARK 500 O ARG A 432 O HOH 61 2.09 REMARK 500 O1P G B 7 CG ARG A 361 2.10 REMARK 500 CE LYS A 423 O HOH 84 2.11 REMARK 500 NH2 ARG A 344 O HOH 28 2.13 REMARK 500 C5 T C 51 CG ASP A 367 2.14 REMARK 500 O LYS A 407 O HOH 93 2.15 REMARK 500 CB ASN A 435 O HOH 61 2.15 REMARK 500 O4 T C 51 CZ ARG A 365 2.16 REMARK 500 O THR A 377 O HOH 102 2.18 REMARK 500 CZ ARG A 371 O HOH 2 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 321 C - N - CA ANGL. DEV. =-15.4 DEGREES REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LU6 RELATED DB: PDB REMARK 900 THEORETICAL MODEL OF THE CARBOXY TERMINAL REGION OF HUMAN REMARK 900 WILM'S TUMOR PROTEIN, WT1 REMARK 900 RELATED ID: 2G7T RELATED DB: PDB REMARK 900 RELATED ID: 2G7V RELATED DB: PDB DBREF 2G7W A 309 448 UNP P19544 WT1_HUMAN 310 449 SEQADV 2G7W ALA A 370 UNP P19544 LYS 371 ENGINEERED SEQRES 1 A 140 LEU VAL ARG SER ALA SER GLU THR SER GLU LYS ARG PRO SEQRES 2 A 140 PHE MET CYS ALA TYR PRO GLY CYS ASN LYS ARG TYR PHE SEQRES 3 A 140 LYS LEU SER HIS LEU GLN MET HIS SER ARG LYS HIS THR SEQRES 4 A 140 GLY GLU LYS PRO TYR GLN CYS ASP PHE LYS ASP CYS GLU SEQRES 5 A 140 ARG ARG PHE SER ARG SER ASP GLN LEU ALA ARG HIS GLN SEQRES 6 A 140 ARG ARG HIS THR GLY VAL LYS PRO PHE GLN CYS LYS THR SEQRES 7 A 140 CYS GLN ARG LYS PHE SER ARG SER ASP HIS LEU LYS THR SEQRES 8 A 140 HIS THR ARG THR HIS THR GLY LYS THR SER GLU LYS PRO SEQRES 9 A 140 PHE SER CYS ARG TRP PRO SER CYS GLN LYS LYS PHE ALA SEQRES 10 A 140 ARG SER ASP GLU LEU VAL ARG HIS HIS ASN MET HIS GLN SEQRES 11 A 140 ARG ASN MET THR LYS LEU GLN LEU ALA LEU SEQRES 1 B 11 A G C G T G G G C G T SEQRES 1 C 11 T A C G C C C A C G C HET ZN 201 1 HET ZN 202 1 HET ZN 203 1 HET CO 204 1 HETNAM ZN ZINC ION HETNAM CO COBALT (II) ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 CO CO 2+ FORMUL 8 HOH *148(H2 O1) HELIX 1 1 ARG A 311 THR A 316 1 6 HELIX 2 2 LYS A 335 GLU A 349 1 15 HELIX 3 3 ARG A 365 GLY A 378 1 14 HELIX 4 4 ARG A 393 GLY A 406 1 14 HELIX 5 5 ARG A 426 ARG A 440 1 14 SHEET 1 A 2 TYR A 352 GLN A 353 0 SHEET 2 A 2 ARG A 362 PHE A 363 -1 O PHE A 363 N TYR A 352 SHEET 1 B 2 PHE A 382 GLN A 383 0 SHEET 2 B 2 LYS A 390 PHE A 391 -1 O PHE A 391 N PHE A 382 SHEET 1 C 2 PHE A 413 SER A 414 0 SHEET 2 C 2 LYS A 423 PHE A 424 -1 O PHE A 424 N PHE A 413 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.001000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.001000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001000 0.00000