PDB Short entry for 2G98 HEADER STRUCTURAL PROTEIN 06-MAR-06 2G98 TITLE HUMAN GAMMA-D-CRYSTALLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA CRYSTALLIN D; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAMMA CRYSTALLIN 4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS CRYSTALLINE, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KMOCH,J.BRYNDA,B.AWSAV,K.BEZOUSKA,P.NOVAK,P.REZACOVA REVDAT 5 30-AUG-23 2G98 1 REMARK REVDAT 4 20-OCT-21 2G98 1 SEQADV REVDAT 3 13-JUL-11 2G98 1 VERSN REVDAT 2 24-FEB-09 2G98 1 VERSN REVDAT 1 02-MAY-06 2G98 0 JRNL AUTH S.KMOCH,J.BRYNDA,B.AWSAV,K.BEZOUSKA,P.NOVAK,P.REZACOVA, JRNL AUTH 2 L.ONDROVA,M.FILIPEC,J.SEDLACEK,M.ELLEDER JRNL TITL LINK BETWEEN A NOVEL HUMAN GAMMA-D-CRYSTALLIN ALLELE AND A JRNL TITL 2 UNIQUE CATARACT PHENOTYPE EXPLAINED BY PROTEIN JRNL TITL 3 CRYSTALLOGRAPHY. JRNL REF HUM.MOL.GENET. V. 12 1779 2000 JRNL REFN ISSN 0964-6906 JRNL PMID 10915766 JRNL DOI 10.1093/HMG/9.12.1779 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1419 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2767 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.803 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2840 ; 0.037 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1972 ; 0.010 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3839 ; 2.687 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4685 ; 1.520 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 8.077 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;35.202 ;22.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;21.269 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.348 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 375 ; 0.190 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3263 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 687 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 706 ; 0.300 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2228 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1276 ; 0.206 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1595 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.242 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.238 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.072 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2078 ; 1.736 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 698 ; 0.640 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2672 ; 2.194 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1409 ; 3.915 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1167 ; 4.981 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 171 4 REMARK 3 1 B 1 B 170 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2236 ; 0.56 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2236 ; 3.64 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4320 22.3840 16.6690 REMARK 3 T TENSOR REMARK 3 T11: -0.0361 T22: -0.0627 REMARK 3 T33: -0.0659 T12: -0.0595 REMARK 3 T13: 0.0045 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 2.8416 L22: 1.6973 REMARK 3 L33: 2.9876 L12: -0.2991 REMARK 3 L13: -0.0381 L23: 0.4413 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.2146 S13: -0.2201 REMARK 3 S21: 0.2390 S22: -0.1756 S23: -0.0661 REMARK 3 S31: -0.0907 S32: 0.0921 S33: 0.1398 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8100 18.9720 -6.6660 REMARK 3 T TENSOR REMARK 3 T11: -0.1460 T22: -0.0119 REMARK 3 T33: -0.0869 T12: 0.0495 REMARK 3 T13: -0.0109 T23: -0.0887 REMARK 3 L TENSOR REMARK 3 L11: 3.6815 L22: 2.2788 REMARK 3 L33: 3.1613 L12: -0.3314 REMARK 3 L13: -1.1702 L23: 0.5749 REMARK 3 S TENSOR REMARK 3 S11: 0.1441 S12: 0.4248 S13: -0.1298 REMARK 3 S21: -0.0455 S22: -0.2094 S23: 0.0518 REMARK 3 S31: -0.0780 S32: -0.3060 S33: 0.0653 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 82 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8120 2.7630 33.7410 REMARK 3 T TENSOR REMARK 3 T11: -0.0707 T22: 0.0468 REMARK 3 T33: -0.0028 T12: 0.0335 REMARK 3 T13: -0.0049 T23: 0.2421 REMARK 3 L TENSOR REMARK 3 L11: 2.1313 L22: 7.5334 REMARK 3 L33: 3.7469 L12: 1.8018 REMARK 3 L13: -0.6932 L23: -4.1827 REMARK 3 S TENSOR REMARK 3 S11: 0.0699 S12: -0.0708 S13: 0.1249 REMARK 3 S21: -0.0993 S22: -0.7547 S23: -0.6357 REMARK 3 S31: -0.0341 S32: 0.6272 S33: 0.6848 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 83 B 170 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5200 2.7650 33.2900 REMARK 3 T TENSOR REMARK 3 T11: 0.0686 T22: 0.0164 REMARK 3 T33: 0.2406 T12: -0.0188 REMARK 3 T13: 0.0962 T23: 0.2407 REMARK 3 L TENSOR REMARK 3 L11: 7.8486 L22: 4.1231 REMARK 3 L33: 4.3629 L12: -0.4747 REMARK 3 L13: -0.9305 L23: 0.3007 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.4702 S13: -0.1931 REMARK 3 S21: -0.3022 S22: 0.0014 S23: -0.6083 REMARK 3 S31: -0.1311 S32: 0.1547 S33: -0.0076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036847. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21417 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1ELP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEVERAL CRYSTALS, ~0.15 X 0.15 X 0.5 REMARK 280 MM FROM THE LENS TISSUE EXTRACT WERE TRANSFERRED TO PBS BUFFER REMARK 280 WITH 25% (V/V) GLYCEROL AND FLASH COOLED IN 100 K NITROGEN REMARK 280 STREAM FOR MEASUREMENTS. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.18750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.13950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.88900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.13950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.18750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.88900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 172 REMARK 465 SER A 173 REMARK 465 ASP B 171 REMARK 465 PHE B 172 REMARK 465 SER B 173 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 53 CG CD1 CD2 REMARK 470 ARG A 58 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 97 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 100 CG CD OE1 NE2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 ASN A 124 CG OD1 ND2 REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 53 CG CD1 CD2 REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 59 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 98 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 100 CG CD OE1 NE2 REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 ASP B 113 CG OD1 OD2 REMARK 470 ASN B 124 CG OD1 ND2 REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 ASP B 149 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 142 O HOH B 231 1.96 REMARK 500 O HOH A 187 O HOH A 250 2.05 REMARK 500 O LEU B 135 O HOH B 224 2.13 REMARK 500 CB LEU A 166 O HOH A 246 2.15 REMARK 500 CD2 HIS B 22 O HOH B 197 2.15 REMARK 500 OG SER B 109 O HOH B 237 2.17 REMARK 500 CB ASN B 124 O HOH B 176 2.18 REMARK 500 O HOH A 204 O HOH A 205 2.18 REMARK 500 N SER B 165 O HOH B 224 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 45 CE1 TYR A 45 CZ -0.082 REMARK 500 ARG A 76 CG ARG A 76 CD -0.227 REMARK 500 GLU A 95 CD GLU A 95 OE2 0.070 REMARK 500 TYR A 143 CD1 TYR A 143 CE1 0.090 REMARK 500 TYR B 6 CE1 TYR B 6 CZ -0.086 REMARK 500 CYS B 18 CB CYS B 18 SG -0.130 REMARK 500 TYR B 28 CD1 TYR B 28 CE1 0.112 REMARK 500 TYR B 50 CE1 TYR B 50 CZ 0.094 REMARK 500 GLN B 54 CB GLN B 54 CG 0.268 REMARK 500 PHE B 56 CA PHE B 56 CB 0.186 REMARK 500 PHE B 56 CG PHE B 56 CD2 0.121 REMARK 500 PHE B 56 CE1 PHE B 56 CZ 0.145 REMARK 500 ARG B 58 CA ARG B 58 CB 0.136 REMARK 500 ALA B 63 CA ALA B 63 CB 0.190 REMARK 500 CYS B 108 CB CYS B 108 SG 0.171 REMARK 500 VAL B 131 CA VAL B 131 CB 0.138 REMARK 500 VAL B 169 CA VAL B 169 CB 0.252 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 29 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP A 73 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 114 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 LEU A 144 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 LEU A 145 CB - CG - CD1 ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 162 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 167 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 168 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 171 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP A 171 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG B 14 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 PHE B 56 N - CA - CB ANGL. DEV. = -10.9 DEGREES REMARK 500 PHE B 56 CB - CG - CD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 PHE B 56 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 LEU B 91 CB - CG - CD1 ANGL. DEV. = -12.1 DEGREES REMARK 500 LEU B 91 CB - CG - CD2 ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG B 168 O - C - N ANGL. DEV. = -10.9 DEGREES REMARK 500 VAL B 169 CA - CB - CG1 ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 115 -54.27 -135.50 REMARK 500 ARG A 116 29.75 102.81 REMARK 500 PHE B 11 32.90 72.46 REMARK 500 ASN B 24 94.17 -162.19 REMARK 500 TYR B 50 40.92 73.09 REMARK 500 ARG B 59 124.77 -37.01 REMARK 500 MET B 69 -2.48 71.74 REMARK 500 TYR B 97 11.07 86.33 REMARK 500 CYS B 110 96.02 -165.99 REMARK 500 ASP B 113 33.76 -98.92 REMARK 500 ARG B 114 5.95 -157.46 REMARK 500 PHE B 115 -74.36 -151.48 REMARK 500 ARG B 116 61.89 105.72 REMARK 500 LEU B 123 -102.21 -139.96 REMARK 500 ASN B 124 93.43 114.29 REMARK 500 ARG B 139 -169.66 -111.27 REMARK 500 LEU B 166 112.20 -164.91 REMARK 500 VAL B 169 98.00 72.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 2G98 A 1 173 UNP P07320 CRGD_HUMAN 1 173 DBREF 2G98 B 1 173 UNP P07320 CRGD_HUMAN 1 173 SEQADV 2G98 SER A 36 UNP P07320 ARG 36 ENGINEERED MUTATION SEQADV 2G98 SER B 36 UNP P07320 ARG 36 ENGINEERED MUTATION SEQRES 1 A 173 GLY LYS ILE THR LEU TYR GLU ASP ARG GLY PHE GLN GLY SEQRES 2 A 173 ARG HIS TYR GLU CYS SER SER ASP HIS PRO ASN LEU GLN SEQRES 3 A 173 PRO TYR LEU SER ARG CYS ASN SER ALA SER VAL ASP SER SEQRES 4 A 173 GLY CYS TRP MET LEU TYR GLU GLN PRO ASN TYR SER GLY SEQRES 5 A 173 LEU GLN TYR PHE LEU ARG ARG GLY ASP TYR ALA ASP HIS SEQRES 6 A 173 GLN GLN TRP MET GLY LEU SER ASP SER VAL ARG SER CYS SEQRES 7 A 173 ARG LEU ILE PRO HIS SER GLY SER HIS ARG ILE ARG LEU SEQRES 8 A 173 TYR GLU ARG GLU ASP TYR ARG GLY GLN MET ILE GLU PHE SEQRES 9 A 173 THR GLU ASP CYS SER CYS LEU GLN ASP ARG PHE ARG PHE SEQRES 10 A 173 ASN GLU ILE HIS SER LEU ASN VAL LEU GLU GLY SER TRP SEQRES 11 A 173 VAL LEU TYR GLU LEU SER ASN TYR ARG GLY ARG GLN TYR SEQRES 12 A 173 LEU LEU MET PRO GLY ASP TYR ARG ARG TYR GLN ASP TRP SEQRES 13 A 173 GLY ALA THR ASN ALA ARG VAL GLY SER LEU ARG ARG VAL SEQRES 14 A 173 ILE ASP PHE SER SEQRES 1 B 173 GLY LYS ILE THR LEU TYR GLU ASP ARG GLY PHE GLN GLY SEQRES 2 B 173 ARG HIS TYR GLU CYS SER SER ASP HIS PRO ASN LEU GLN SEQRES 3 B 173 PRO TYR LEU SER ARG CYS ASN SER ALA SER VAL ASP SER SEQRES 4 B 173 GLY CYS TRP MET LEU TYR GLU GLN PRO ASN TYR SER GLY SEQRES 5 B 173 LEU GLN TYR PHE LEU ARG ARG GLY ASP TYR ALA ASP HIS SEQRES 6 B 173 GLN GLN TRP MET GLY LEU SER ASP SER VAL ARG SER CYS SEQRES 7 B 173 ARG LEU ILE PRO HIS SER GLY SER HIS ARG ILE ARG LEU SEQRES 8 B 173 TYR GLU ARG GLU ASP TYR ARG GLY GLN MET ILE GLU PHE SEQRES 9 B 173 THR GLU ASP CYS SER CYS LEU GLN ASP ARG PHE ARG PHE SEQRES 10 B 173 ASN GLU ILE HIS SER LEU ASN VAL LEU GLU GLY SER TRP SEQRES 11 B 173 VAL LEU TYR GLU LEU SER ASN TYR ARG GLY ARG GLN TYR SEQRES 12 B 173 LEU LEU MET PRO GLY ASP TYR ARG ARG TYR GLN ASP TRP SEQRES 13 B 173 GLY ALA THR ASN ALA ARG VAL GLY SER LEU ARG ARG VAL SEQRES 14 B 173 ILE ASP PHE SER FORMUL 3 HOH *152(H2 O) HELIX 1 1 ASP A 8 GLN A 12 5 5 HELIX 2 2 ASP A 64 MET A 69 5 6 HELIX 3 3 CYS A 110 ARG A 114 5 5 HELIX 4 4 ARG A 152 GLY A 157 5 6 HELIX 5 5 ARG B 9 PHE B 11 5 3 HELIX 6 6 GLN B 47 SER B 51 5 5 HELIX 7 7 ASP B 64 MET B 69 5 6 HELIX 8 8 ARG B 152 GLY B 157 5 6 SHEET 1 A 4 HIS A 15 CYS A 18 0 SHEET 2 A 4 LYS A 2 TYR A 6 -1 N LEU A 5 O TYR A 16 SHEET 3 A 4 SER A 34 TYR A 45 -1 O SER A 36 N THR A 4 SHEET 4 A 4 TYR A 55 TYR A 62 -1 O LEU A 57 N TRP A 42 SHEET 1 B 4 HIS A 15 CYS A 18 0 SHEET 2 B 4 LYS A 2 TYR A 6 -1 N LEU A 5 O TYR A 16 SHEET 3 B 4 SER A 34 TYR A 45 -1 O SER A 36 N THR A 4 SHEET 4 B 4 SER A 77 LEU A 80 -1 O ARG A 79 N MET A 43 SHEET 1 C 3 ARG A 139 LEU A 145 0 SHEET 2 C 3 TRP A 130 LEU A 135 -1 N LEU A 132 O TYR A 143 SHEET 3 C 3 SER A 165 ARG A 168 -1 O ARG A 167 N VAL A 131 SHEET 1 D 4 GLN B 12 CYS B 18 0 SHEET 2 D 4 LYS B 2 ASP B 8 -1 N ILE B 3 O CYS B 18 SHEET 3 D 4 SER B 34 SER B 39 -1 O SER B 34 N TYR B 6 SHEET 4 D 4 ASP B 61 TYR B 62 -1 O TYR B 62 N ALA B 35 SHEET 1 E 3 TYR B 55 LEU B 57 0 SHEET 2 E 3 TRP B 42 TYR B 45 -1 N LEU B 44 O TYR B 55 SHEET 3 E 3 SER B 77 LEU B 80 -1 O SER B 77 N TYR B 45 SHEET 1 F 2 ARG B 90 LEU B 91 0 SHEET 2 F 2 ILE B 102 GLU B 103 -1 O ILE B 102 N LEU B 91 SHEET 1 G 2 TRP B 130 LEU B 135 0 SHEET 2 G 2 ARG B 139 LEU B 145 -1 O LEU B 145 N TRP B 130 CRYST1 54.375 81.778 106.279 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009409 0.00000