PDB Short entry for 2GC1 HEADER ISOMERASE 13-MAR-06 2GC1 TITLE THE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE FROM PYROCOCCUS TITLE 2 FURIOSUS IN COMPLEX WITH SORBITOL 6-PHOSPHATE AND ZINC COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PHOSPHOGLUCOSE ISOMERASE; COMPND 5 SYNONYM: GPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, COMPND 6 PHI; COMPND 7 EC: 5.3.1.9; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: PGIA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLUW557 KEYWDS CUPIN, PHOSPHOGLUCOSE ISOMERASE, SORBITOL 6-PHOSPHATE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.BERRISFORD,D.W.RICE,P.J.BAKER REVDAT 4 30-AUG-23 2GC1 1 REMARK SEQADV HETSYN LINK REVDAT 3 24-FEB-09 2GC1 1 VERSN REVDAT 2 09-MAY-06 2GC1 1 JRNL REVDAT 1 11-APR-06 2GC1 0 JRNL AUTH J.M.BERRISFORD,A.M.HOUNSLOW,J.AKERBOOM,W.R.HAGEN,S.J.BROUNS, JRNL AUTH 2 J.VAN DER OOST,I.A.MURRAY,G.MICHAEL BLACKBURN,J.P.WALTHO, JRNL AUTH 3 D.W.RICE,P.J.BAKER JRNL TITL EVIDENCE SUPPORTING A CIS-ENEDIOL-BASED MECHANISM FOR JRNL TITL 2 PYROCOCCUS FURIOSUS PHOSPHOGLUCOSE ISOMERASE JRNL REF J.MOL.BIOL. V. 358 1353 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16580686 JRNL DOI 10.1016/J.JMB.2006.03.015 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 28346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1436 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1875 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.202 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.163 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3145 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4268 ; 1.653 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 6.342 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;32.661 ;24.430 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 525 ;15.424 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.698 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2400 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1472 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2064 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 294 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.117 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.126 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.106 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1934 ; 0.650 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3010 ; 1.102 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1421 ; 1.455 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1251 ; 2.230 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28380 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 69.673 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.37900 REMARK 200 R SYM FOR SHELL (I) : 0.37900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1X8E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M AMMONIUM SULPHATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6, 20% PEG MONOETHYL ETHER 2000, 5 MM D-SORBITOL 6- REMARK 280 PHOSPHATE, 5MM ZNCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.42850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 47 -36.56 -149.55 REMARK 500 PRO A 113 -19.77 -48.92 REMARK 500 TYR A 133 -9.63 82.14 REMARK 500 GLU B 47 -40.93 -136.11 REMARK 500 TYR B 133 -7.20 85.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 NE2 REMARK 620 2 HIS A 90 NE2 111.7 REMARK 620 3 GLU A 97 OE2 163.8 83.7 REMARK 620 4 HIS A 136 NE2 88.0 97.9 84.9 REMARK 620 5 S6P A 502 O1 91.9 93.4 92.0 167.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 143 OD2 REMARK 620 2 GLU A 144 OE2 127.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 88 NE2 REMARK 620 2 HIS B 90 NE2 106.9 REMARK 620 3 GLU B 97 OE1 165.5 87.3 REMARK 620 4 HIS B 136 NE2 91.3 94.8 84.6 REMARK 620 5 S6P B 501 O1 92.7 94.6 88.8 168.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S6P B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S6P A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X7N RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS PHOSPHOGLUCOSE REMARK 900 ISOMERASE WITH BOUND 5-PHOSPHO-D-ARABINONATE AND MANGANESE REMARK 900 RELATED ID: 1X8E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS PHOSPHOGLUCOSE ISOMERASE REMARK 900 FREE ENZYME REMARK 900 RELATED ID: 1X82 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE FROM PYROCOCCUS REMARK 900 FURIOSUS WITH BOUND 5-PHOSPHO-D-ARABINONATE REMARK 900 RELATED ID: 2GC0 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE FROM PYROCOCCUS REMARK 900 FURIOSUS IN COMPLEX WIWITH 5-PHOSPHO-D-ARABINONOHYDROXAMATE AND ZINC REMARK 900 RELATED ID: 2GC2 RELATED DB: PDB REMARK 900 RELATED ID: 2GC3 RELATED DB: PDB DBREF 2GC1 A 1 187 UNP P83194 G6PI_PYRFU 1 187 DBREF 2GC1 B 1 187 UNP P83194 G6PI_PYRFU 1 187 SEQADV 2GC1 MET A 0 UNP P83194 CLONING ARTIFACT SEQADV 2GC1 MET B 0 UNP P83194 CLONING ARTIFACT SEQRES 1 A 188 MET MET TYR LYS GLU PRO PHE GLY VAL LYS VAL ASP PHE SEQRES 2 A 188 GLU THR GLY ILE ILE GLU GLY ALA LYS LYS SER VAL ARG SEQRES 3 A 188 ARG LEU SER ASP MET GLU GLY TYR PHE VAL ASP GLU ARG SEQRES 4 A 188 ALA TRP LYS GLU LEU VAL GLU LYS GLU ASP PRO VAL VAL SEQRES 5 A 188 TYR GLU VAL TYR ALA VAL GLU GLN GLU GLU LYS GLU GLY SEQRES 6 A 188 ASP LEU ASN PHE ALA THR THR VAL LEU TYR PRO GLY LYS SEQRES 7 A 188 VAL GLY LYS GLU PHE PHE PHE THR LYS GLY HIS PHE HIS SEQRES 8 A 188 ALA LYS LEU ASP ARG ALA GLU VAL TYR VAL ALA LEU LYS SEQRES 9 A 188 GLY LYS GLY GLY MET LEU LEU GLN THR PRO GLU GLY ASP SEQRES 10 A 188 ALA LYS TRP ILE SER MET GLU PRO GLY THR VAL VAL TYR SEQRES 11 A 188 VAL PRO PRO TYR TRP ALA HIS ARG THR VAL ASN ILE GLY SEQRES 12 A 188 ASP GLU PRO PHE ILE PHE LEU ALA ILE TYR PRO ALA ASP SEQRES 13 A 188 ALA GLY HIS ASP TYR GLY THR ILE ALA GLU LYS GLY PHE SEQRES 14 A 188 SER LYS ILE VAL ILE GLU GLU ASN GLY GLU VAL LYS VAL SEQRES 15 A 188 VAL ASP ASN PRO ARG TRP SEQRES 1 B 188 MET MET TYR LYS GLU PRO PHE GLY VAL LYS VAL ASP PHE SEQRES 2 B 188 GLU THR GLY ILE ILE GLU GLY ALA LYS LYS SER VAL ARG SEQRES 3 B 188 ARG LEU SER ASP MET GLU GLY TYR PHE VAL ASP GLU ARG SEQRES 4 B 188 ALA TRP LYS GLU LEU VAL GLU LYS GLU ASP PRO VAL VAL SEQRES 5 B 188 TYR GLU VAL TYR ALA VAL GLU GLN GLU GLU LYS GLU GLY SEQRES 6 B 188 ASP LEU ASN PHE ALA THR THR VAL LEU TYR PRO GLY LYS SEQRES 7 B 188 VAL GLY LYS GLU PHE PHE PHE THR LYS GLY HIS PHE HIS SEQRES 8 B 188 ALA LYS LEU ASP ARG ALA GLU VAL TYR VAL ALA LEU LYS SEQRES 9 B 188 GLY LYS GLY GLY MET LEU LEU GLN THR PRO GLU GLY ASP SEQRES 10 B 188 ALA LYS TRP ILE SER MET GLU PRO GLY THR VAL VAL TYR SEQRES 11 B 188 VAL PRO PRO TYR TRP ALA HIS ARG THR VAL ASN ILE GLY SEQRES 12 B 188 ASP GLU PRO PHE ILE PHE LEU ALA ILE TYR PRO ALA ASP SEQRES 13 B 188 ALA GLY HIS ASP TYR GLY THR ILE ALA GLU LYS GLY PHE SEQRES 14 B 188 SER LYS ILE VAL ILE GLU GLU ASN GLY GLU VAL LYS VAL SEQRES 15 B 188 VAL ASP ASN PRO ARG TRP HET S6P A 502 16 HET ZN A 401 1 HET ZN A 403 1 HET S6P B 501 16 HET ZN B 402 1 HETNAM S6P D-SORBITOL-6-PHOSPHATE HETNAM ZN ZINC ION HETSYN S6P 1-O-PHOSPHONO-D-GLUCITOL; D-GLUCITOL-6-PHOSPHATE FORMUL 3 S6P 2(C6 H15 O9 P) FORMUL 4 ZN 3(ZN 2+) FORMUL 8 HOH *307(H2 O) HELIX 1 1 SER A 28 GLU A 31 5 4 HELIX 2 2 ASP A 36 GLU A 47 1 12 HELIX 3 3 TYR A 160 GLY A 167 1 8 HELIX 4 4 SER B 28 GLU B 31 5 4 HELIX 5 5 ASP B 36 GLU B 47 1 12 HELIX 6 6 TYR B 160 GLY B 167 1 8 SHEET 1 A 7 PHE A 6 LYS A 9 0 SHEET 2 A 7 THR B 126 VAL B 130 -1 O VAL B 127 N VAL A 8 SHEET 3 A 7 GLU B 97 LYS B 103 -1 N GLU B 97 O VAL B 130 SHEET 4 A 7 PHE B 146 PRO B 153 -1 O ILE B 147 N LEU B 102 SHEET 5 A 7 LEU B 66 LEU B 73 -1 N ALA B 69 O ALA B 150 SHEET 6 A 7 VAL B 50 VAL B 57 -1 N VAL B 57 O PHE B 68 SHEET 7 A 7 LYS B 21 ARG B 26 -1 N LYS B 21 O ALA B 56 SHEET 1 B 7 LYS A 21 ARG A 26 0 SHEET 2 B 7 VAL A 50 VAL A 57 -1 O VAL A 51 N ARG A 25 SHEET 3 B 7 LEU A 66 LEU A 73 -1 O PHE A 68 N VAL A 57 SHEET 4 B 7 PHE A 146 PRO A 153 -1 O ALA A 150 N ALA A 69 SHEET 5 B 7 GLU A 97 LYS A 103 -1 N LEU A 102 O ILE A 147 SHEET 6 B 7 THR A 126 VAL A 130 -1 O VAL A 130 N GLU A 97 SHEET 7 B 7 PHE B 6 LYS B 9 -1 O VAL B 8 N VAL A 127 SHEET 1 C 2 LYS A 77 VAL A 78 0 SHEET 2 C 2 GLU A 81 PHE A 82 -1 O GLU A 81 N VAL A 78 SHEET 1 D 3 ALA A 117 MET A 122 0 SHEET 2 D 3 GLY A 106 GLN A 111 -1 N MET A 108 O ILE A 120 SHEET 3 D 3 ALA A 135 ASN A 140 -1 O ALA A 135 N GLN A 111 SHEET 1 E 2 LYS A 170 GLU A 175 0 SHEET 2 E 2 GLU A 178 ASP A 183 -1 O LYS A 180 N ILE A 173 SHEET 1 F 2 LYS B 77 VAL B 78 0 SHEET 2 F 2 GLU B 81 PHE B 82 -1 O GLU B 81 N VAL B 78 SHEET 1 G 3 ALA B 117 MET B 122 0 SHEET 2 G 3 GLY B 106 GLN B 111 -1 N GLY B 106 O MET B 122 SHEET 3 G 3 ALA B 135 ASN B 140 -1 O ARG B 137 N LEU B 109 SHEET 1 H 2 LYS B 170 GLU B 175 0 SHEET 2 H 2 GLU B 178 ASP B 183 -1 O LYS B 180 N ILE B 173 LINK NE2 HIS A 88 ZN ZN A 401 1555 1555 2.27 LINK NE2 HIS A 90 ZN ZN A 401 1555 1555 2.24 LINK OE2 GLU A 97 ZN ZN A 401 1555 1555 2.02 LINK NE2 HIS A 136 ZN ZN A 401 1555 1555 2.07 LINK OD2 ASP A 143 ZN ZN A 403 1555 1555 2.01 LINK OE2 GLU A 144 ZN ZN A 403 1555 1555 1.82 LINK ZN ZN A 401 O1 S6P A 502 1555 1555 2.25 LINK NE2 HIS B 88 ZN ZN B 402 1555 1555 2.31 LINK NE2 HIS B 90 ZN ZN B 402 1555 1555 2.22 LINK OE1 GLU B 97 ZN ZN B 402 1555 1555 2.03 LINK NE2 HIS B 136 ZN ZN B 402 1555 1555 2.10 LINK ZN ZN B 402 O1 S6P B 501 1555 1555 2.14 SITE 1 AC1 18 TYR B 52 THR B 71 THR B 85 GLY B 87 SITE 2 AC1 18 HIS B 88 HIS B 90 GLU B 97 TYR B 99 SITE 3 AC1 18 HIS B 136 HIS B 158 TYR B 160 ZN B 402 SITE 4 AC1 18 HOH B 517 HOH B 520 HOH B 524 HOH B 529 SITE 5 AC1 18 HOH B 531 HOH B 535 SITE 1 AC2 17 TYR A 52 THR A 71 THR A 85 GLY A 87 SITE 2 AC2 17 HIS A 88 HIS A 90 GLU A 97 TYR A 99 SITE 3 AC2 17 HIS A 136 HIS A 158 TYR A 160 ZN A 401 SITE 4 AC2 17 HOH A 509 HOH A 513 HOH A 535 HOH A 538 SITE 5 AC2 17 HOH A 558 SITE 1 AC3 5 HIS A 88 HIS A 90 GLU A 97 HIS A 136 SITE 2 AC3 5 S6P A 502 SITE 1 AC4 5 HIS B 88 HIS B 90 GLU B 97 HIS B 136 SITE 2 AC4 5 S6P B 501 SITE 1 AC5 4 GLU A 63 ASP A 143 GLU A 144 GLU B 63 CRYST1 42.311 72.857 71.640 90.00 103.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023630 0.000000 0.005700 0.00000 SCALE2 0.000000 0.013730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014360 0.00000