PDB Short entry for 2GDZ
HEADER    OXIDOREDUCTASE                          17-MAR-06   2GDZ              
TITLE     CRYSTAL STRUCTURE OF 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE TYPE1,     
TITLE    2 COMPLEXED WITH NAD+                                                  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NAD+-DEPENDENT 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE;      
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES (-1)-265;                                         
COMPND   5 SYNONYM: 15 HYDROXYPROSTAGLANDIN DEHYDROGENASE TYPE1;                
COMPND   6 EC: 1.1.1.141;                                                       
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21-R3;                                   
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET-SGC                                   
KEYWDS    HYDROXYPROSTAGLANDIN, DEHYDROGENASE, STRUCTURAL GENOMICS, SHORT-CHAIN 
KEYWDS   2 DEHYDROGENASE/REDUCTASE, INFLAMMATION, STRUCTURAL GENOMICS           
KEYWDS   3 CONSORTIUM, SGC, OXIDOREDUCTASE                                      
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    E.S.PILKA,K.GUO,K.KAVANAGH,F.VON DELFT,C.ARROWSMITH,J.WEIGELT,        
AUTHOR   2 A.EDWARDS,M.SUNDSTROM,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM     
AUTHOR   3 (SGC)                                                                
REVDAT   4   13-JUL-11 2GDZ    1       VERSN                                    
REVDAT   3   24-NOV-10 2GDZ    1       JRNL                                     
REVDAT   2   24-FEB-09 2GDZ    1       VERSN                                    
REVDAT   1   04-APR-06 2GDZ    0                                                
JRNL        AUTH   F.H.NIESEN,L.SCHULTZ,A.JADHAV,C.BHATIA,K.GUO,D.J.MALONEY,    
JRNL        AUTH 2 E.S.PILKA,M.WANG,U.OPPERMANN,T.D.HEIGHTMAN,A.SIMEONOV        
JRNL        TITL   HIGH-AFFINITY INHIBITORS OF HUMAN NAD-DEPENDENT              
JRNL        TITL 2 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE: MECHANISMS OF         
JRNL        TITL 3 INHIBITION AND STRUCTURE-ACTIVITY RELATIONSHIPS.             
JRNL        REF    PLOS ONE                      V.   5 E1371 2010              
JRNL        REFN                   ESSN 1932-6203                               
JRNL        PMID   21072165                                                     
JRNL        DOI    10.1371/JOURNAL.PONE.0013719                                 
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.65 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.2.0019                                      
REMARK   3   AUTHORS     : MURSHUDOV,VAGIN,DODSON                               
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 21.86                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.4                           
REMARK   3   NUMBER OF REFLECTIONS             : 28883                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.177                           
REMARK   3   R VALUE            (WORKING SET) : 0.176                           
REMARK   3   FREE R VALUE                     : 0.212                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1538                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.65                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.74                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1952                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 94.71                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3810                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 105                          
REMARK   3   BIN FREE R VALUE                    : 0.4420                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2026                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 44                                      
REMARK   3   SOLVENT ATOMS            : 299                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 18.57                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.38000                                              
REMARK   3    B22 (A**2) : 0.38000                                              
REMARK   3    B33 (A**2) : -0.77000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.104         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.103         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.063         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.826         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.965                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.943                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  2136 ; 0.019 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  2899 ; 1.627 ; 1.981       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   269 ; 5.284 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):    92 ;39.233 ;25.652       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   372 ;12.522 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):     7 ;20.858 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   332 ; 0.111 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  1581 ; 0.007 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  1146 ; 0.205 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  1484 ; 0.304 ; 0.200       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   241 ; 0.141 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    92 ; 0.185 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):    30 ; 0.119 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1365 ; 1.054 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  2116 ; 1.489 ; 2.000       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):   887 ; 2.482 ; 3.000       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):   781 ; 3.736 ; 4.500       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 2GDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAR-06.                  
REMARK 100 THE RCSB ID CODE IS RCSB037000.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : NULL                               
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU FR-E+ SUPERBRIGHT           
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : OSMIC                              
REMARK 200  OPTICS                         : OSMIC                              
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU RAXIS IV                    
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM                             
REMARK 200  DATA SCALING SOFTWARE          : CCP4 (SCALA)                       
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 30422                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.650                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 196.120                            
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.6                               
REMARK 200  DATA REDUNDANCY                : 11.900                             
REMARK 200  R MERGE                    (I) : 0.07700                            
REMARK 200  R SYM                      (I) : 0.07700                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 23.9000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.74                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.6                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 7.20                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.68800                            
REMARK 200  R SYM FOR SHELL            (I) : 0.68800                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.500                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: PDB ENTRY 1WMB, 1IY8, 1ZK3                           
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 40.23                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 PCB, 30% PEG 1000, PH 8.0, VAPOR     
REMARK 280  DIFFUSION, SITTING DROP, TEMPERATURE 298.0K                         
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y+1/2,X+1/2,Z+1/4                                      
REMARK 290       4555   Y+1/2,-X+1/2,Z+3/4                                      
REMARK 290       5555   -X+1/2,Y+1/2,-Z+1/4                                     
REMARK 290       6555   X+1/2,-Y+1/2,-Z+3/4                                     
REMARK 290       7555   Y,X,-Z                                                  
REMARK 290       8555   -Y,-X,-Z+1/2                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       97.88550            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000       24.77000            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000       24.77000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       48.94275            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000       24.77000            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000       24.77000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000      146.82825            
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000       24.77000            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       24.77000            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       48.94275            
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000       24.77000            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       24.77000            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000      146.82825            
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000       97.88550            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED      
REMARK 300 BY THE FOLLOWING SYMMETRY OPERATION: Y, X, -Z + (0 0 1)              
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA,PQS                                              
REMARK 350 TOTAL BURIED SURFACE AREA: 7160 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 19960 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT2   2  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT3   2  0.000000  0.000000 -1.000000      195.77100            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A    -1                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLU A  54    CD   OE1  OE2                                       
REMARK 470     GLU A 205    CD   OE1  OE2                                       
REMARK 470     LYS A 215    CD   CE   NZ                                        
REMARK 470     ASP A 236    CG   OD1  OD2                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASN A  96      103.54   -161.69                                   
REMARK 500    SER A 137     -138.18    -94.32                                   
REMARK 500    GLN A 148       57.18   -143.22                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH A 523        DISTANCE =  6.12 ANGSTROMS                       
REMARK 525    HOH A 568        DISTANCE =  5.09 ANGSTROMS                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 300                 
DBREF  2GDZ A    3   256  UNP    P15428   PGDH_HUMAN       3    256             
SEQADV 2GDZ MET A   -1  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ ALA A    0  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ HIS A    1  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ MET A    2  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ GLY A  257  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ SER A  258  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ LYS A  259  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ GLU A  260  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ ASN A  261  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ LEU A  262  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ TYR A  263  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ PHE A  264  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ GLN A  265  UNP  P15428              EXPRESSION TAG                 
SEQRES   1 A  267  MET ALA HIS MET VAL ASN GLY LYS VAL ALA LEU VAL THR          
SEQRES   2 A  267  GLY ALA ALA GLN GLY ILE GLY ARG ALA PHE ALA GLU ALA          
SEQRES   3 A  267  LEU LEU LEU LYS GLY ALA LYS VAL ALA LEU VAL ASP TRP          
SEQRES   4 A  267  ASN LEU GLU ALA GLY VAL GLN CYS LYS ALA ALA LEU HIS          
SEQRES   5 A  267  GLU GLN PHE GLU PRO GLN LYS THR LEU PHE ILE GLN CYS          
SEQRES   6 A  267  ASP VAL ALA ASP GLN GLN GLN LEU ARG ASP THR PHE ARG          
SEQRES   7 A  267  LYS VAL VAL ASP HIS PHE GLY ARG LEU ASP ILE LEU VAL          
SEQRES   8 A  267  ASN ASN ALA GLY VAL ASN ASN GLU LYS ASN TRP GLU LYS          
SEQRES   9 A  267  THR LEU GLN ILE ASN LEU VAL SER VAL ILE SER GLY THR          
SEQRES  10 A  267  TYR LEU GLY LEU ASP TYR MET SER LYS GLN ASN GLY GLY          
SEQRES  11 A  267  GLU GLY GLY ILE ILE ILE ASN MET SER SER LEU ALA GLY          
SEQRES  12 A  267  LEU MET PRO VAL ALA GLN GLN PRO VAL TYR CYS ALA SER          
SEQRES  13 A  267  LYS HIS GLY ILE VAL GLY PHE THR ARG SER ALA ALA LEU          
SEQRES  14 A  267  ALA ALA ASN LEU MET ASN SER GLY VAL ARG LEU ASN ALA          
SEQRES  15 A  267  ILE CYS PRO GLY PHE VAL ASN THR ALA ILE LEU GLU SER          
SEQRES  16 A  267  ILE GLU LYS GLU GLU ASN MET GLY GLN TYR ILE GLU TYR          
SEQRES  17 A  267  LYS ASP HIS ILE LYS ASP MET ILE LYS TYR TYR GLY ILE          
SEQRES  18 A  267  LEU ASP PRO PRO LEU ILE ALA ASN GLY LEU ILE THR LEU          
SEQRES  19 A  267  ILE GLU ASP ASP ALA LEU ASN GLY ALA ILE MET LYS ILE          
SEQRES  20 A  267  THR THR SER LYS GLY ILE HIS PHE GLN ASP TYR GLY SER          
SEQRES  21 A  267  LYS GLU ASN LEU TYR PHE GLN                                  
HET    NAD  A 300      44                                                       
HETNAM     NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE                                
FORMUL   2  NAD    C21 H27 N7 O14 P2                                            
FORMUL   3  HOH   *299(H2 O)                                                    
HELIX    1   1 GLN A   15  LYS A   28  1                                  14    
HELIX    2   2 ASN A   38  HIS A   50  1                                  13    
HELIX    3   3 GLU A   54  GLN A   56  5                                   3    
HELIX    4   4 ASP A   67  GLY A   83  1                                  17    
HELIX    5   5 ASN A   99  LEU A  108  1                                  10    
HELIX    6   6 LEU A  108  SER A  123  1                                  16    
HELIX    7   7 LYS A  124  GLY A  127  5                                   4    
HELIX    8   8 SER A  138  LEU A  142  5                                   5    
HELIX    9   9 GLN A  148  ASN A  173  1                                  26    
HELIX   10  10 THR A  188  SER A  193  1                                   6    
HELIX   11  11 LYS A  196  GLY A  201  1                                   6    
HELIX   12  12 GLN A  202  GLU A  205  5                                   4    
HELIX   13  13 TYR A  206  GLY A  218  1                                  13    
HELIX   14  14 ASP A  221  ASP A  235  1                                  15    
HELIX   15  15 ASN A  261  GLN A  265  5                                   5    
SHEET    1   A 8 THR A  58  GLN A  62  0                                        
SHEET    2   A 8 LYS A  31  ASP A  36  1  N  LEU A  34   O  LEU A  59           
SHEET    3   A 8 VAL A   7  THR A  11  1  N  ALA A   8   O  ALA A  33           
SHEET    4   A 8 ILE A  87  ASN A  90  1  O  VAL A  89   N  LEU A   9           
SHEET    5   A 8 GLY A 131  MET A 136  1  O  ILE A 134   N  LEU A  88           
SHEET    6   A 8 VAL A 176  PRO A 183  1  O  ARG A 177   N  ILE A 133           
SHEET    7   A 8 ILE A 242  THR A 246  1  O  MET A 243   N  CYS A 182           
SHEET    8   A 8 GLY A 250  PHE A 253 -1  O  HIS A 252   N  LYS A 244           
SITE     1 AC1 32 GLY A  12  GLN A  15  GLY A  16  ILE A  17                    
SITE     2 AC1 32 ASP A  36  TRP A  37  CYS A  63  ASP A  64                    
SITE     3 AC1 32 VAL A  65  ASN A  91  ALA A  92  GLY A  93                    
SITE     4 AC1 32 VAL A  94  ILE A 106  SER A 137  SER A 138                    
SITE     5 AC1 32 TYR A 151  LYS A 155  PRO A 183  GLY A 184                    
SITE     6 AC1 32 PHE A 185  VAL A 186  THR A 188  ALA A 189                    
SITE     7 AC1 32 ILE A 190  HOH A 304  HOH A 313  HOH A 325                    
SITE     8 AC1 32 HOH A 378  HOH A 383  HOH A 434  HOH A 441                    
CRYST1   49.540   49.540  195.771  90.00  90.00  90.00 P 41 21 2     8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.020186  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.020186  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.005108        0.00000