PDB Short entry for 2GDZ
HEADER    OXIDOREDUCTASE                          17-MAR-06   2GDZ              
TITLE     CRYSTAL STRUCTURE OF 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE TYPE1,     
TITLE    2 COMPLEXED WITH NAD+                                                  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NAD+-DEPENDENT 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE;      
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES (-1)-265;                                         
COMPND   5 SYNONYM: 15 HYDROXYPROSTAGLANDIN DEHYDROGENASE TYPE1;                
COMPND   6 EC: 1.1.1.141;                                                       
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21-R3;                                   
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET-SGC                                   
KEYWDS    HYDROXYPROSTAGLANDIN, DEHYDROGENASE, STRUCTURAL GENOMICS, SHORT-CHAIN 
KEYWDS   2 DEHYDROGENASE/REDUCTASE, INFLAMMATION, STRUCTURAL GENOMICS           
KEYWDS   3 CONSORTIUM, SGC, OXIDOREDUCTASE                                      
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    E.S.PILKA,K.GUO,K.KAVANAGH,F.VON DELFT,C.ARROWSMITH,J.WEIGELT,        
AUTHOR   2 A.EDWARDS,M.SUNDSTROM,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM     
AUTHOR   3 (SGC)                                                                
REVDAT   5   25-OCT-23 2GDZ    1       REMARK SEQADV                            
REVDAT   4   13-JUL-11 2GDZ    1       VERSN                                    
REVDAT   3   24-NOV-10 2GDZ    1       JRNL                                     
REVDAT   2   24-FEB-09 2GDZ    1       VERSN                                    
REVDAT   1   04-APR-06 2GDZ    0                                                
JRNL        AUTH   F.H.NIESEN,L.SCHULTZ,A.JADHAV,C.BHATIA,K.GUO,D.J.MALONEY,    
JRNL        AUTH 2 E.S.PILKA,M.WANG,U.OPPERMANN,T.D.HEIGHTMAN,A.SIMEONOV        
JRNL        TITL   HIGH-AFFINITY INHIBITORS OF HUMAN NAD-DEPENDENT              
JRNL        TITL 2 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE: MECHANISMS OF         
JRNL        TITL 3 INHIBITION AND STRUCTURE-ACTIVITY RELATIONSHIPS.             
JRNL        REF    PLOS ONE                      V.   5 13719 2010              
JRNL        REFN                   ESSN 1932-6203                               
JRNL        PMID   21072165                                                     
JRNL        DOI    10.1371/JOURNAL.PONE.0013719                                 
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.65 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.2.0019                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 21.86                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.4                           
REMARK   3   NUMBER OF REFLECTIONS             : 28883                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.177                           
REMARK   3   R VALUE            (WORKING SET) : 0.176                           
REMARK   3   FREE R VALUE                     : 0.212                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1538                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.65                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.74                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1952                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 94.71                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3810                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 105                          
REMARK   3   BIN FREE R VALUE                    : 0.4420                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2026                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 44                                      
REMARK   3   SOLVENT ATOMS            : 299                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 18.57                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.38000                                              
REMARK   3    B22 (A**2) : 0.38000                                              
REMARK   3    B33 (A**2) : -0.77000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.104         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.103         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.063         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.826         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.965                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.943                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  2136 ; 0.019 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  2899 ; 1.627 ; 1.981       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   269 ; 5.284 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):    92 ;39.233 ;25.652       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   372 ;12.522 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):     7 ;20.858 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   332 ; 0.111 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  1581 ; 0.007 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  1146 ; 0.205 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  1484 ; 0.304 ; 0.200       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   241 ; 0.141 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    92 ; 0.185 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):    30 ; 0.119 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1365 ; 1.054 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  2116 ; 1.489 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):   887 ; 2.482 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):   781 ; 3.736 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 2GDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAR-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000037000.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : NULL                               
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU FR-E+ SUPERBRIGHT           
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : OSMIC                              
REMARK 200  OPTICS                         : OSMIC                              
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU RAXIS IV                    
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM                             
REMARK 200  DATA SCALING SOFTWARE          : CCP4 (SCALA)                       
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 30422                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.650                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 196.120                            
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.6                               
REMARK 200  DATA REDUNDANCY                : 11.90                              
REMARK 200  R MERGE                    (I) : 0.07700                            
REMARK 200  R SYM                      (I) : 0.07700                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 23.9000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.74                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.6                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 7.20                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.68800                            
REMARK 200  R SYM FOR SHELL            (I) : 0.68800                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.500                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: PDB ENTRY 1WMB, 1IY8, 1ZK3                           
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 40.23                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 PCB, 30% PEG 1000, PH 8.0, VAPOR     
REMARK 280  DIFFUSION, SITTING DROP, TEMPERATURE 298.0K                         
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y+1/2,X+1/2,Z+1/4                                      
REMARK 290       4555   Y+1/2,-X+1/2,Z+3/4                                      
REMARK 290       5555   -X+1/2,Y+1/2,-Z+1/4                                     
REMARK 290       6555   X+1/2,-Y+1/2,-Z+3/4                                     
REMARK 290       7555   Y,X,-Z                                                  
REMARK 290       8555   -Y,-X,-Z+1/2                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       97.88550            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000       24.77000            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000       24.77000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       48.94275            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000       24.77000            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000       24.77000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000      146.82825            
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000       24.77000            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       24.77000            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       48.94275            
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000       24.77000            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       24.77000            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000      146.82825            
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000       97.88550            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED      
REMARK 300 BY THE FOLLOWING SYMMETRY OPERATION: Y, X, -Z + (0 0 1)              
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA,PQS                                              
REMARK 350 TOTAL BURIED SURFACE AREA: 7160 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 19960 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT2   2  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT3   2  0.000000  0.000000 -1.000000      195.77100            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A    -1                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLU A  54    CD   OE1  OE2                                       
REMARK 470     GLU A 205    CD   OE1  OE2                                       
REMARK 470     LYS A 215    CD   CE   NZ                                        
REMARK 470     ASP A 236    CG   OD1  OD2                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASN A  96      103.54   -161.69                                   
REMARK 500    SER A 137     -138.18    -94.32                                   
REMARK 500    GLN A 148       57.18   -143.22                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 300                 
DBREF  2GDZ A    3   256  UNP    P15428   PGDH_HUMAN       3    256             
SEQADV 2GDZ MET A   -1  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ ALA A    0  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ HIS A    1  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ MET A    2  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ GLY A  257  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ SER A  258  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ LYS A  259  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ GLU A  260  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ ASN A  261  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ LEU A  262  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ TYR A  263  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ PHE A  264  UNP  P15428              EXPRESSION TAG                 
SEQADV 2GDZ GLN A  265  UNP  P15428              EXPRESSION TAG                 
SEQRES   1 A  267  MET ALA HIS MET VAL ASN GLY LYS VAL ALA LEU VAL THR          
SEQRES   2 A  267  GLY ALA ALA GLN GLY ILE GLY ARG ALA PHE ALA GLU ALA          
SEQRES   3 A  267  LEU LEU LEU LYS GLY ALA LYS VAL ALA LEU VAL ASP TRP          
SEQRES   4 A  267  ASN LEU GLU ALA GLY VAL GLN CYS LYS ALA ALA LEU HIS          
SEQRES   5 A  267  GLU GLN PHE GLU PRO GLN LYS THR LEU PHE ILE GLN CYS          
SEQRES   6 A  267  ASP VAL ALA ASP GLN GLN GLN LEU ARG ASP THR PHE ARG          
SEQRES   7 A  267  LYS VAL VAL ASP HIS PHE GLY ARG LEU ASP ILE LEU VAL          
SEQRES   8 A  267  ASN ASN ALA GLY VAL ASN ASN GLU LYS ASN TRP GLU LYS          
SEQRES   9 A  267  THR LEU GLN ILE ASN LEU VAL SER VAL ILE SER GLY THR          
SEQRES  10 A  267  TYR LEU GLY LEU ASP TYR MET SER LYS GLN ASN GLY GLY          
SEQRES  11 A  267  GLU GLY GLY ILE ILE ILE ASN MET SER SER LEU ALA GLY          
SEQRES  12 A  267  LEU MET PRO VAL ALA GLN GLN PRO VAL TYR CYS ALA SER          
SEQRES  13 A  267  LYS HIS GLY ILE VAL GLY PHE THR ARG SER ALA ALA LEU          
SEQRES  14 A  267  ALA ALA ASN LEU MET ASN SER GLY VAL ARG LEU ASN ALA          
SEQRES  15 A  267  ILE CYS PRO GLY PHE VAL ASN THR ALA ILE LEU GLU SER          
SEQRES  16 A  267  ILE GLU LYS GLU GLU ASN MET GLY GLN TYR ILE GLU TYR          
SEQRES  17 A  267  LYS ASP HIS ILE LYS ASP MET ILE LYS TYR TYR GLY ILE          
SEQRES  18 A  267  LEU ASP PRO PRO LEU ILE ALA ASN GLY LEU ILE THR LEU          
SEQRES  19 A  267  ILE GLU ASP ASP ALA LEU ASN GLY ALA ILE MET LYS ILE          
SEQRES  20 A  267  THR THR SER LYS GLY ILE HIS PHE GLN ASP TYR GLY SER          
SEQRES  21 A  267  LYS GLU ASN LEU TYR PHE GLN                                  
HET    NAD  A 300      44                                                       
HETNAM     NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE                                
FORMUL   2  NAD    C21 H27 N7 O14 P2                                            
FORMUL   3  HOH   *299(H2 O)                                                    
HELIX    1   1 GLN A   15  LYS A   28  1                                  14    
HELIX    2   2 ASN A   38  HIS A   50  1                                  13    
HELIX    3   3 GLU A   54  GLN A   56  5                                   3    
HELIX    4   4 ASP A   67  GLY A   83  1                                  17    
HELIX    5   5 ASN A   99  LEU A  108  1                                  10    
HELIX    6   6 LEU A  108  SER A  123  1                                  16    
HELIX    7   7 LYS A  124  GLY A  127  5                                   4    
HELIX    8   8 SER A  138  LEU A  142  5                                   5    
HELIX    9   9 GLN A  148  ASN A  173  1                                  26    
HELIX   10  10 THR A  188  SER A  193  1                                   6    
HELIX   11  11 LYS A  196  GLY A  201  1                                   6    
HELIX   12  12 GLN A  202  GLU A  205  5                                   4    
HELIX   13  13 TYR A  206  GLY A  218  1                                  13    
HELIX   14  14 ASP A  221  ASP A  235  1                                  15    
HELIX   15  15 ASN A  261  GLN A  265  5                                   5    
SHEET    1   A 8 THR A  58  GLN A  62  0                                        
SHEET    2   A 8 LYS A  31  ASP A  36  1  N  LEU A  34   O  LEU A  59           
SHEET    3   A 8 VAL A   7  THR A  11  1  N  ALA A   8   O  ALA A  33           
SHEET    4   A 8 ILE A  87  ASN A  90  1  O  VAL A  89   N  LEU A   9           
SHEET    5   A 8 GLY A 131  MET A 136  1  O  ILE A 134   N  LEU A  88           
SHEET    6   A 8 VAL A 176  PRO A 183  1  O  ARG A 177   N  ILE A 133           
SHEET    7   A 8 ILE A 242  THR A 246  1  O  MET A 243   N  CYS A 182           
SHEET    8   A 8 GLY A 250  PHE A 253 -1  O  HIS A 252   N  LYS A 244           
SITE     1 AC1 32 GLY A  12  GLN A  15  GLY A  16  ILE A  17                    
SITE     2 AC1 32 ASP A  36  TRP A  37  CYS A  63  ASP A  64                    
SITE     3 AC1 32 VAL A  65  ASN A  91  ALA A  92  GLY A  93                    
SITE     4 AC1 32 VAL A  94  ILE A 106  SER A 137  SER A 138                    
SITE     5 AC1 32 TYR A 151  LYS A 155  PRO A 183  GLY A 184                    
SITE     6 AC1 32 PHE A 185  VAL A 186  THR A 188  ALA A 189                    
SITE     7 AC1 32 ILE A 190  HOH A 304  HOH A 313  HOH A 325                    
SITE     8 AC1 32 HOH A 378  HOH A 383  HOH A 434  HOH A 441                    
CRYST1   49.540   49.540  195.771  90.00  90.00  90.00 P 41 21 2     8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.020186  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.020186  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.005108        0.00000