PDB Short entry for 2GGF HEADER TRANSLATION 24-MAR-06 2GGF TITLE SOLUTION STRUCTURE OF THE MA3 DOMAIN OF HUMAN PROGRAMMED CELL DEATH 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH 4, ISOFORM 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MA3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDCD4; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050302-19; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS MA3, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2GGF 1 REMARK SEQADV REVDAT 2 24-FEB-09 2GGF 1 VERSN REVDAT 1 24-APR-07 2GGF 0 JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE JRNL AUTH 3 (RSGI) JRNL TITL SOLUTION STRUCTURE OF THE MA3 DOMAIN OF HUMAN PROGRAMMED JRNL TITL 2 CELL DEATH 4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GGF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037085. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.36MM 13C/15N-MA3; 20MM D-TRIS REMARK 210 -HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801/20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9736, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 378 -75.05 -44.55 REMARK 500 1 LYS A 381 -70.27 -65.15 REMARK 500 1 SER A 393 32.29 -88.01 REMARK 500 1 GLN A 400 -27.12 -38.95 REMARK 500 1 CYS A 447 140.27 -39.33 REMARK 500 1 SER A 454 93.62 -39.11 REMARK 500 2 SER A 322 154.73 -42.83 REMARK 500 2 HIS A 361 -37.81 -38.99 REMARK 500 2 SER A 378 -72.78 -47.87 REMARK 500 2 SER A 393 36.41 -93.98 REMARK 500 2 GLN A 400 -70.32 -48.77 REMARK 500 2 ILE A 438 -38.04 -37.45 REMARK 500 2 LYS A 441 -34.41 -38.58 REMARK 500 2 ARG A 450 40.48 -85.42 REMARK 500 3 GLU A 355 40.62 34.54 REMARK 500 3 GLU A 377 38.86 -83.67 REMARK 500 3 SER A 393 35.71 -93.73 REMARK 500 3 LYS A 402 -71.03 -55.95 REMARK 500 3 CYS A 447 124.03 -38.92 REMARK 500 3 PRO A 453 -177.91 -69.75 REMARK 500 4 SER A 321 157.22 -49.57 REMARK 500 4 SER A 393 33.09 -93.84 REMARK 500 4 CYS A 447 126.86 -36.83 REMARK 500 5 ASP A 332 -70.85 -59.15 REMARK 500 5 GLU A 355 44.58 39.99 REMARK 500 5 GLU A 377 35.46 -85.81 REMARK 500 5 SER A 378 -71.76 -102.02 REMARK 500 5 SER A 393 34.70 -90.88 REMARK 500 5 GLN A 400 -33.49 -39.82 REMARK 500 5 SER A 449 134.51 -171.22 REMARK 500 5 ARG A 450 79.44 -112.05 REMARK 500 6 PHE A 359 35.00 -86.93 REMARK 500 6 HIS A 361 -37.05 -38.28 REMARK 500 6 SER A 374 166.54 -48.01 REMARK 500 6 GLU A 377 40.66 -83.57 REMARK 500 6 SER A 378 -61.12 -100.79 REMARK 500 6 LYS A 388 -70.85 -50.42 REMARK 500 6 SER A 393 35.01 -90.63 REMARK 500 6 SER A 394 42.81 39.58 REMARK 500 6 CYS A 447 120.95 -39.03 REMARK 500 6 PRO A 453 97.88 -69.77 REMARK 500 7 VAL A 328 -37.17 -38.34 REMARK 500 7 GLU A 377 42.60 -108.97 REMARK 500 7 SER A 378 -60.62 -107.37 REMARK 500 7 SER A 393 38.43 -97.58 REMARK 500 7 SER A 394 50.79 39.85 REMARK 500 7 LYS A 402 -70.17 -54.02 REMARK 500 7 SER A 454 -60.63 -106.27 REMARK 500 8 VAL A 328 -36.21 -38.54 REMARK 500 8 SER A 374 174.15 -49.06 REMARK 500 REMARK 500 THIS ENTRY HAS 124 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002011605.1 RELATED DB: TARGETDB DBREF 2GGF A 327 450 GB 19913545 AAH26104 327 450 SEQADV 2GGF GLY A 320 GB 19913545 CLONING ARTIFACT SEQADV 2GGF SER A 321 GB 19913545 CLONING ARTIFACT SEQADV 2GGF SER A 322 GB 19913545 CLONING ARTIFACT SEQADV 2GGF GLY A 323 GB 19913545 CLONING ARTIFACT SEQADV 2GGF SER A 324 GB 19913545 CLONING ARTIFACT SEQADV 2GGF SER A 325 GB 19913545 CLONING ARTIFACT SEQADV 2GGF GLY A 326 GB 19913545 CLONING ARTIFACT SEQADV 2GGF SER A 451 GB 19913545 CLONING ARTIFACT SEQADV 2GGF GLY A 452 GB 19913545 CLONING ARTIFACT SEQADV 2GGF PRO A 453 GB 19913545 CLONING ARTIFACT SEQADV 2GGF SER A 454 GB 19913545 CLONING ARTIFACT SEQADV 2GGF SER A 455 GB 19913545 CLONING ARTIFACT SEQADV 2GGF GLY A 456 GB 19913545 CLONING ARTIFACT SEQRES 1 A 137 GLY SER SER GLY SER SER GLY LEU VAL LYS GLU ILE ASP SEQRES 2 A 137 MET LEU LEU LYS GLU TYR LEU LEU SER GLY ASP ILE SER SEQRES 3 A 137 GLU ALA GLU HIS CYS LEU LYS GLU LEU GLU VAL PRO HIS SEQRES 4 A 137 PHE HIS HIS GLU LEU VAL TYR GLU ALA ILE ILE MET VAL SEQRES 5 A 137 LEU GLU SER THR GLY GLU SER THR PHE LYS MET ILE LEU SEQRES 6 A 137 ASP LEU LEU LYS SER LEU TRP LYS SER SER THR ILE THR SEQRES 7 A 137 VAL ASP GLN MET LYS ARG GLY TYR GLU ARG ILE TYR ASN SEQRES 8 A 137 GLU ILE PRO ASP ILE ASN LEU ASP VAL PRO HIS SER TYR SEQRES 9 A 137 SER VAL LEU GLU ARG PHE VAL GLU GLU CYS PHE GLN ALA SEQRES 10 A 137 GLY ILE ILE SER LYS GLN LEU ARG ASP LEU CYS PRO SER SEQRES 11 A 137 ARG SER GLY PRO SER SER GLY HELIX 1 1 VAL A 328 SER A 341 1 14 HELIX 2 2 ILE A 344 GLU A 353 1 10 HELIX 3 3 HIS A 360 GLU A 373 1 14 HELIX 4 4 THR A 379 LYS A 392 1 14 HELIX 5 5 VAL A 398 ASN A 410 1 13 HELIX 6 6 ILE A 412 ASP A 418 1 7 HELIX 7 7 SER A 422 ALA A 436 1 15 HELIX 8 8 LYS A 441 LEU A 446 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000