PDB Short entry for 2GJT HEADER HYDROLASE 31-MAR-06 2GJT TITLE CRYSTAL STRUCTURE OF THE HUMAN RECEPTOR PHOSPHATASE PTPRO COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE PTPRO; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 916-1208; COMPND 5 SYNONYM: GLOMERULAR EPITHELIAL PROTEIN 1, PROTEIN TYROSINE COMPND 6 PHOSPHATASE U2, PTPASE U2, PTP-U2; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRO, GLEPP1, PTPU2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TYROSINE PHOSPHATASE, PTPRO, GLEPP1, PTPU2, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BARR,E.UGOCHUKWU,J.ESWARAN,S.DAS,F.NIESEN,P.SAVITSKY,A.TURNBULL, AUTHOR 2 M.SUNDSTROM,C.ARROWSMITH,A.EDWARDS,J.WEIGELT,F.VON DELFT, AUTHOR 3 E.PAPAGRIGORIOU,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 7 30-AUG-23 2GJT 1 REMARK SEQADV REVDAT 6 21-MAR-12 2GJT 1 JRNL REVDAT 5 13-JUL-11 2GJT 1 VERSN REVDAT 4 09-JUN-09 2GJT 1 REVDAT REVDAT 3 24-FEB-09 2GJT 1 VERSN REVDAT 2 27-JAN-09 2GJT 1 JRNL REVDAT 1 02-MAY-06 2GJT 0 JRNL AUTH A.J.BARR,E.UGOCHUKWU,W.H.LEE,O.N.KING,P.FILIPPAKOPOULOS, JRNL AUTH 2 I.ALFANO,P.SAVITSKY,N.A.BURGESS-BROWN,S.MULLER,S.KNAPP JRNL TITL LARGE-SCALE STRUCTURAL ANALYSIS OF THE CLASSICAL HUMAN JRNL TITL 2 PROTEIN TYROSINE PHOSPHATOME. JRNL REF CELL(CAMBRIDGE,MASS.) V. 136 352 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19167335 JRNL DOI 10.1016/J.CELL.2008.11.038 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2076 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2884 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4590 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.179 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4725 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3164 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6408 ; 1.587 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7675 ; 0.995 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 572 ; 6.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 237 ;36.842 ;23.966 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 784 ;13.762 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;17.823 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 686 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5282 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 997 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 941 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3218 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2281 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2365 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 184 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.123 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3017 ; 6.374 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1141 ; 2.536 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4635 ; 7.292 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2050 ; 9.675 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1770 ;11.126 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 914 A 1208 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3798 -38.8191 -5.4027 REMARK 3 T TENSOR REMARK 3 T11: -0.2570 T22: -0.1355 REMARK 3 T33: -0.1022 T12: 0.0561 REMARK 3 T13: -0.0533 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.1657 L22: 2.0160 REMARK 3 L33: 2.1328 L12: 0.3538 REMARK 3 L13: -0.4559 L23: -0.2358 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: 0.1550 S13: 0.0906 REMARK 3 S21: 0.0345 S22: 0.0259 S23: 0.2014 REMARK 3 S31: 0.0632 S32: 0.0109 S33: -0.0064 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 914 B 1201 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9510 -49.3556 21.6184 REMARK 3 T TENSOR REMARK 3 T11: -0.0843 T22: 0.0017 REMARK 3 T33: -0.1131 T12: 0.0522 REMARK 3 T13: -0.0240 T23: 0.0486 REMARK 3 L TENSOR REMARK 3 L11: 2.8489 L22: 2.2168 REMARK 3 L33: 3.4400 L12: 0.0723 REMARK 3 L13: 0.6038 L23: -0.9233 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: -0.4281 S13: -0.1645 REMARK 3 S21: 0.4331 S22: 0.1411 S23: 0.0890 REMARK 3 S31: 0.0553 S32: -0.4599 S33: -0.1666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41322 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 42.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2AHS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ISOPROPANOL, PEG4K, PH 8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.68667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.84333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.76500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.92167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.60833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 983 REMARK 465 MET B 984 REMARK 465 ASN B 985 REMARK 465 GLU B 986 REMARK 465 GLU B 987 REMARK 465 GLU B 988 REMARK 465 HIS B 1103 REMARK 465 GLY B 1104 REMARK 465 VAL B 1105 REMARK 465 PRO B 1106 REMARK 465 THR B 1107 REMARK 465 GLN B 1202 REMARK 465 PHE B 1203 REMARK 465 CYS B 1204 REMARK 465 ILE B 1205 REMARK 465 SER B 1206 REMARK 465 ASP B 1207 REMARK 465 VAL B 1208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 928 CE NZ REMARK 470 LYS A 932 CE NZ REMARK 470 GLU A 986 CD OE1 OE2 REMARK 470 GLU A 987 CD OE1 OE2 REMARK 470 LYS A1023 CE NZ REMARK 470 ARG A1043 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1056 CD OE1 OE2 REMARK 470 LYS A1129 CE NZ REMARK 470 GLN A1193 CD OE1 NE2 REMARK 470 GLN A1202 CD OE1 NE2 REMARK 470 VAL A1208 CG1 CG2 REMARK 470 ASP B 924 CG OD1 OD2 REMARK 470 LYS B 928 CD CE NZ REMARK 470 LYS B 932 CE NZ REMARK 470 ASP B 933 CG OD1 OD2 REMARK 470 LYS B 937 CG CD CE NZ REMARK 470 LEU B 940 CD1 CD2 REMARK 470 GLU B 944 CD OE1 OE2 REMARK 470 LYS B 946 CE NZ REMARK 470 LYS B1042 CE NZ REMARK 470 ARG B1043 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1055 CD OE1 OE2 REMARK 470 GLU B1056 CG CD OE1 OE2 REMARK 470 ILE B1083 CG1 CG2 CD1 REMARK 470 ASP B1087 CB CG OD1 OD2 REMARK 470 MET B1089 SD CE REMARK 470 GLN B1090 CD OE1 NE2 REMARK 470 ASP B1102 CG OD1 OD2 REMARK 470 ASN B1109 CG OD1 ND2 REMARK 470 GLU B1112 CG CD OE1 OE2 REMARK 470 GLN B1116 CG CD OE1 NE2 REMARK 470 GLN B1123 CD OE1 NE2 REMARK 470 GLN B1124 CD OE1 NE2 REMARK 470 LYS B1127 CG CD CE NZ REMARK 470 LYS B1129 CE NZ REMARK 470 GLU B1160 CD OE1 OE2 REMARK 470 GLN B1193 CD OE1 NE2 REMARK 470 MET B1197 SD CE REMARK 470 LYS B1198 CD CE NZ REMARK 470 LYS B1199 CD CE NZ REMARK 470 GLN B1201 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A1206 CB SER A1206 OG 0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE B 948 CG1 - CB - CG2 ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1086 -112.80 50.37 REMARK 500 CYS A1136 -115.61 -127.66 REMARK 500 SER A1137 -62.61 -101.47 REMARK 500 VAL A1140 -38.73 -132.00 REMARK 500 VAL A1179 94.32 68.54 REMARK 500 ASN B 916 81.37 -151.71 REMARK 500 HIS B 954 51.29 -140.41 REMARK 500 ALA B1086 -147.28 52.55 REMARK 500 GLU B1088 105.09 -162.38 REMARK 500 CYS B1136 -122.93 -123.67 REMARK 500 SER B1137 -62.14 -93.46 REMARK 500 VAL B1140 -35.49 -131.34 REMARK 500 VAL B1179 83.90 64.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 932 ASP B 933 -31.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AHS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN TYROSINE REMARK 900 RECEPTOR PHOSPHATASE BETA DBREF 2GJT A 916 1208 UNP Q16827 PTPRO_HUMAN 916 1208 DBREF 2GJT B 916 1208 UNP Q16827 PTPRO_HUMAN 916 1208 SEQADV 2GJT SER A 914 UNP Q16827 CLONING ARTIFACT SEQADV 2GJT MET A 915 UNP Q16827 CLONING ARTIFACT SEQADV 2GJT SER B 914 UNP Q16827 CLONING ARTIFACT SEQADV 2GJT MET B 915 UNP Q16827 CLONING ARTIFACT SEQRES 1 A 295 SER MET ASN PRO VAL GLN LEU ASP ASP PHE ASP ALA TYR SEQRES 2 A 295 ILE LYS ASP MET ALA LYS ASP SER ASP TYR LYS PHE SER SEQRES 3 A 295 LEU GLN PHE GLU GLU LEU LYS LEU ILE GLY LEU ASP ILE SEQRES 4 A 295 PRO HIS PHE ALA ALA ASP LEU PRO LEU ASN ARG CYS LYS SEQRES 5 A 295 ASN ARG TYR THR ASN ILE LEU PRO TYR ASP PHE SER ARG SEQRES 6 A 295 VAL ARG LEU VAL SER MET ASN GLU GLU GLU GLY ALA ASP SEQRES 7 A 295 TYR ILE ASN ALA ASN TYR ILE PRO GLY TYR ASN SER PRO SEQRES 8 A 295 GLN GLU TYR ILE ALA THR GLN GLY PRO LEU PRO GLU THR SEQRES 9 A 295 ARG ASN ASP PHE TRP LYS MET VAL LEU GLN GLN LYS SER SEQRES 10 A 295 GLN ILE ILE VAL MET LEU THR GLN CYS ASN GLU LYS ARG SEQRES 11 A 295 ARG VAL LYS CYS ASP HIS TYR TRP PRO PHE THR GLU GLU SEQRES 12 A 295 PRO ILE ALA TYR GLY ASP ILE THR VAL GLU MET ILE SER SEQRES 13 A 295 GLU GLU GLU GLN ASP ASP TRP ALA CYS ARG HIS PHE ARG SEQRES 14 A 295 ILE ASN TYR ALA ASP GLU MET GLN ASP VAL MET HIS PHE SEQRES 15 A 295 ASN TYR THR ALA TRP PRO ASP HIS GLY VAL PRO THR ALA SEQRES 16 A 295 ASN ALA ALA GLU SER ILE LEU GLN PHE VAL HIS MET VAL SEQRES 17 A 295 ARG GLN GLN ALA THR LYS SER LYS GLY PRO MET ILE ILE SEQRES 18 A 295 HIS CYS SER ALA GLY VAL GLY ARG THR GLY THR PHE ILE SEQRES 19 A 295 ALA LEU ASP ARG LEU LEU GLN HIS ILE ARG ASP HIS GLU SEQRES 20 A 295 PHE VAL ASP ILE LEU GLY LEU VAL SER GLU MET ARG SER SEQRES 21 A 295 TYR ARG MET SER MET VAL GLN THR GLU GLU GLN TYR ILE SEQRES 22 A 295 PHE ILE HIS GLN CYS VAL GLN LEU MET TRP MET LYS LYS SEQRES 23 A 295 LYS GLN GLN PHE CYS ILE SER ASP VAL SEQRES 1 B 295 SER MET ASN PRO VAL GLN LEU ASP ASP PHE ASP ALA TYR SEQRES 2 B 295 ILE LYS ASP MET ALA LYS ASP SER ASP TYR LYS PHE SER SEQRES 3 B 295 LEU GLN PHE GLU GLU LEU LYS LEU ILE GLY LEU ASP ILE SEQRES 4 B 295 PRO HIS PHE ALA ALA ASP LEU PRO LEU ASN ARG CYS LYS SEQRES 5 B 295 ASN ARG TYR THR ASN ILE LEU PRO TYR ASP PHE SER ARG SEQRES 6 B 295 VAL ARG LEU VAL SER MET ASN GLU GLU GLU GLY ALA ASP SEQRES 7 B 295 TYR ILE ASN ALA ASN TYR ILE PRO GLY TYR ASN SER PRO SEQRES 8 B 295 GLN GLU TYR ILE ALA THR GLN GLY PRO LEU PRO GLU THR SEQRES 9 B 295 ARG ASN ASP PHE TRP LYS MET VAL LEU GLN GLN LYS SER SEQRES 10 B 295 GLN ILE ILE VAL MET LEU THR GLN CYS ASN GLU LYS ARG SEQRES 11 B 295 ARG VAL LYS CYS ASP HIS TYR TRP PRO PHE THR GLU GLU SEQRES 12 B 295 PRO ILE ALA TYR GLY ASP ILE THR VAL GLU MET ILE SER SEQRES 13 B 295 GLU GLU GLU GLN ASP ASP TRP ALA CYS ARG HIS PHE ARG SEQRES 14 B 295 ILE ASN TYR ALA ASP GLU MET GLN ASP VAL MET HIS PHE SEQRES 15 B 295 ASN TYR THR ALA TRP PRO ASP HIS GLY VAL PRO THR ALA SEQRES 16 B 295 ASN ALA ALA GLU SER ILE LEU GLN PHE VAL HIS MET VAL SEQRES 17 B 295 ARG GLN GLN ALA THR LYS SER LYS GLY PRO MET ILE ILE SEQRES 18 B 295 HIS CYS SER ALA GLY VAL GLY ARG THR GLY THR PHE ILE SEQRES 19 B 295 ALA LEU ASP ARG LEU LEU GLN HIS ILE ARG ASP HIS GLU SEQRES 20 B 295 PHE VAL ASP ILE LEU GLY LEU VAL SER GLU MET ARG SER SEQRES 21 B 295 TYR ARG MET SER MET VAL GLN THR GLU GLU GLN TYR ILE SEQRES 22 B 295 PHE ILE HIS GLN CYS VAL GLN LEU MET TRP MET LYS LYS SEQRES 23 B 295 LYS GLN GLN PHE CYS ILE SER ASP VAL HET CL A 301 1 HET CL A 302 1 HET CL A 303 1 HET CL A 305 1 HET CL A 306 1 HET CL B 304 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 6(CL 1-) FORMUL 9 HOH *210(H2 O) HELIX 1 1 ASP A 922 LEU A 947 1 26 HELIX 2 2 PHE A 955 ASN A 966 5 12 HELIX 3 3 LEU A 1014 GLU A 1016 5 3 HELIX 4 4 THR A 1017 GLN A 1028 1 12 HELIX 5 5 THR A 1107 SER A 1128 1 22 HELIX 6 6 VAL A 1140 HIS A 1159 1 20 HELIX 7 7 ASP A 1163 SER A 1173 1 11 HELIX 8 8 THR A 1181 PHE A 1203 1 23 HELIX 9 9 ASP B 922 LYS B 932 1 11 HELIX 10 10 ASP B 935 LYS B 946 1 12 HELIX 11 11 LEU B 959 ASN B 966 5 8 HELIX 12 12 LEU B 1014 GLU B 1016 5 3 HELIX 13 13 THR B 1017 GLN B 1028 1 12 HELIX 14 14 ASN B 1109 SER B 1128 1 20 HELIX 15 15 VAL B 1140 HIS B 1159 1 20 HELIX 16 16 ASP B 1163 SER B 1173 1 11 HELIX 17 17 THR B 1181 GLN B 1201 1 21 SHEET 1 A 2 VAL A 918 GLN A 919 0 SHEET 2 A 2 PHE A1161 VAL A1162 -1 O VAL A1162 N VAL A 918 SHEET 1 B 9 ARG A 978 ARG A 980 0 SHEET 2 B 9 TYR A 992 ILE A 998 -1 O ALA A 995 N VAL A 979 SHEET 3 B 9 TYR A1007 THR A1010 -1 O ALA A1009 N ASN A 996 SHEET 4 B 9 MET A1132 HIS A1135 1 O ILE A1134 N ILE A1008 SHEET 5 B 9 ILE A1032 MET A1035 1 N VAL A1034 O ILE A1133 SHEET 6 B 9 GLU A1088 TYR A1097 1 O PHE A1095 N MET A1035 SHEET 7 B 9 TRP A1076 TYR A1085 -1 N PHE A1081 O VAL A1092 SHEET 8 B 9 ILE A1063 GLU A1072 -1 N GLU A1071 O CYS A1078 SHEET 9 B 9 ILE A1058 TYR A1060 -1 N TYR A1060 O ILE A1063 SHEET 1 C 2 ASN A1040 GLU A1041 0 SHEET 2 C 2 ARG A1044 VAL A1045 -1 O ARG A1044 N GLU A1041 SHEET 1 D 2 VAL B 918 GLN B 919 0 SHEET 2 D 2 PHE B1161 VAL B1162 -1 O VAL B1162 N VAL B 918 SHEET 1 E 8 ALA B 995 ILE B 998 0 SHEET 2 E 8 TYR B1007 THR B1010 -1 O ALA B1009 N ASN B 996 SHEET 3 E 8 MET B1132 HIS B1135 1 O ILE B1134 N ILE B1008 SHEET 4 E 8 ILE B1032 MET B1035 1 N VAL B1034 O ILE B1133 SHEET 5 E 8 MET B1089 TYR B1097 1 O PHE B1095 N ILE B1033 SHEET 6 E 8 TRP B1076 ASN B1084 -1 N ALA B1077 O ASN B1096 SHEET 7 E 8 ILE B1063 GLU B1072 -1 N ILE B1068 O HIS B1080 SHEET 8 E 8 ILE B1058 TYR B1060 -1 N TYR B1060 O ILE B1063 SHEET 1 F 2 ASN B1040 GLU B1041 0 SHEET 2 F 2 ARG B1044 VAL B1045 -1 O ARG B1044 N GLU B1041 CISPEP 1 HIS A 1103 GLY A 1104 0 17.86 CISPEP 2 ALA B 1108 ASN B 1109 0 -8.83 SITE 1 AC1 1 MET A1089 SITE 1 AC2 1 GLN A1005 SITE 1 AC3 1 GLU A1170 CRYST1 131.060 131.060 77.530 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007630 0.004405 0.000000 0.00000 SCALE2 0.000000 0.008810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012898 0.00000