PDB Short entry for 2GLI HEADER TRANSCRIPTION/DNA 09-NOV-93 2GLI TITLE FIVE-FINGER GLI/DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*TP*TP*CP*GP*TP*CP*TP*TP*GP*GP*GP*TP*GP*GP*TP*CP*CP*AP*CP*G)- COMPND 4 3'); COMPND 5 CHAIN: C; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*AP*CP*GP*TP*GP*GP*AP*CP*CP*AP*CP*CP*CP*AP*AP*GP*AP*CP*GP*AP*A)- COMPND 10 3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PROTEIN (FIVE-FINGER GLI); COMPND 15 CHAIN: A; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: GLI ONCOGENE; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_GENE: GLI ONCOGENE KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.P.PAVLETICH,C.O.PABO REVDAT 3 14-FEB-24 2GLI 1 REMARK LINK REVDAT 2 24-FEB-09 2GLI 1 VERSN REVDAT 1 09-NOV-93 2GLI 0 JRNL AUTH N.P.PAVLETICH,C.O.PABO JRNL TITL CRYSTAL STRUCTURE OF A FIVE-FINGER GLI-DNA COMPLEX: NEW JRNL TITL 2 PERSPECTIVES ON ZINC FINGERS. JRNL REF SCIENCE V. 261 1701 1993 JRNL REFN ISSN 0036-8075 JRNL PMID 8378770 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 9187 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1270 REMARK 3 NUCLEIC ACID ATOMS : 855 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.015 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 3.070 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000178138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 98.00 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10856 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 74.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 22.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 DG C 21 N3 DC D 2 2.01 REMARK 500 N CYS A 202 O LYS A 209 2.08 REMARK 500 N6 DA C 19 O4 DT D 4 2.10 REMARK 500 OD1 ASP A 116 NE2 GLN A 120 2.14 REMARK 500 N1 DA C 19 N3 DT D 4 2.17 REMARK 500 N GLU A 103 NH2 ARG A 107 2.17 REMARK 500 O HIS A 251 N LYS A 253 2.19 REMARK 500 O6 DG C 14 N4 DC D 9 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N3 DT C 1 N1 DA D 1 1544 2.03 REMARK 500 O4 DT C 1 N6 DA D 1 1544 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 11 N9 DG C 11 C4 0.055 REMARK 500 DG C 12 C6 DG C 12 N1 -0.043 REMARK 500 DT C 13 O3' DT C 13 C3' -0.045 REMARK 500 DG C 14 O3' DG C 14 C3' -0.072 REMARK 500 DA D 1 C5' DA D 1 C4' 0.043 REMARK 500 DT D 4 O3' DT D 4 C3' -0.039 REMARK 500 DA D 7 O3' DA D 7 C3' -0.046 REMARK 500 DC D 11 C1' DC D 11 N1 -0.102 REMARK 500 DC D 12 N1 DC D 12 C6 -0.058 REMARK 500 DC D 13 O3' DC D 13 C3' -0.082 REMARK 500 DC D 13 C1' DC D 13 N1 -0.088 REMARK 500 GLU A 103 CD GLU A 103 OE2 0.068 REMARK 500 GLU A 119 CD GLU A 119 OE2 0.083 REMARK 500 GLU A 133 CD GLU A 133 OE2 0.069 REMARK 500 GLU A 136 CD GLU A 136 OE2 0.068 REMARK 500 GLU A 147 CD GLU A 147 OE2 0.075 REMARK 500 GLU A 203 CD GLU A 203 OE2 0.077 REMARK 500 GLU A 205 CD GLU A 205 OE2 0.079 REMARK 500 GLU A 228 CD GLU A 228 OE2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 1 O4' - C4' - C3' ANGL. DEV. = -3.5 DEGREES REMARK 500 DT C 2 N3 - C4 - O4 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT C 3 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC C 4 O5' - C5' - C4' ANGL. DEV. = -8.0 DEGREES REMARK 500 DC C 4 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DC C 4 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 DT C 6 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 DT C 6 C3' - O3' - P ANGL. DEV. = 20.8 DEGREES REMARK 500 DC C 7 C4' - C3' - C2' ANGL. DEV. = -4.4 DEGREES REMARK 500 DC C 7 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC C 7 C3' - O3' - P ANGL. DEV. = 11.1 DEGREES REMARK 500 DT C 8 P - O5' - C5' ANGL. DEV. = -19.7 DEGREES REMARK 500 DT C 9 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG C 10 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG C 10 O4' - C1' - N9 ANGL. DEV. = 7.7 DEGREES REMARK 500 DG C 11 O4' - C4' - C3' ANGL. DEV. = -4.7 DEGREES REMARK 500 DG C 11 C4' - C3' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 DG C 11 C4 - C5 - N7 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG C 11 C5 - N7 - C8 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG C 11 C8 - N9 - C4 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG C 11 N9 - C4 - C5 ANGL. DEV. = 4.4 DEGREES REMARK 500 DG C 11 C6 - C5 - N7 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG C 11 C8 - N9 - C1' ANGL. DEV. = 9.7 DEGREES REMARK 500 DG C 12 P - O5' - C5' ANGL. DEV. = -13.7 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG C 12 N1 - C6 - O6 ANGL. DEV. = -7.1 DEGREES REMARK 500 DG C 12 C5 - C6 - O6 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT C 13 P - O5' - C5' ANGL. DEV. = -14.4 DEGREES REMARK 500 DT C 13 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = -5.9 DEGREES REMARK 500 DG C 14 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 DG C 15 O4' - C1' - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG C 15 C5 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC C 17 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DC C 18 C6 - N1 - C2 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA C 19 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DA C 19 N1 - C6 - N6 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA C 19 C3' - O3' - P ANGL. DEV. = 11.0 DEGREES REMARK 500 DC C 20 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DC C 20 C6 - N1 - C2 ANGL. DEV. = -2.6 DEGREES REMARK 500 DC C 20 N3 - C4 - C5 ANGL. DEV. = -2.6 DEGREES REMARK 500 DG C 21 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG C 21 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG C 21 N3 - C2 - N2 ANGL. DEV. = -5.2 DEGREES REMARK 500 DA D 1 C5' - C4' - O4' ANGL. DEV. = 8.1 DEGREES REMARK 500 DC D 2 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT D 4 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT D 4 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT D 4 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 110 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 104 61.49 67.52 REMARK 500 ASP A 105 116.62 163.15 REMARK 500 ASP A 109 108.21 -43.34 REMARK 500 GLU A 133 142.36 25.70 REMARK 500 GLU A 136 127.27 64.54 REMARK 500 HIS A 140 59.10 -143.65 REMARK 500 SER A 145 12.52 -42.10 REMARK 500 GLU A 147 -91.22 39.18 REMARK 500 ARG A 149 87.86 -64.16 REMARK 500 PRO A 150 155.73 -45.61 REMARK 500 VAL A 158 -38.27 -33.56 REMARK 500 ARG A 162 -13.45 -44.92 REMARK 500 ARG A 163 -85.81 -68.60 REMARK 500 PHE A 174 110.03 -33.12 REMARK 500 ASN A 186 -73.69 -53.15 REMARK 500 LEU A 187 -37.22 -38.10 REMARK 500 HIS A 190 -37.05 -35.49 REMARK 500 GLU A 197 106.63 -47.40 REMARK 500 LYS A 198 60.63 -108.63 REMARK 500 PRO A 199 -5.94 -49.33 REMARK 500 HIS A 204 142.43 155.55 REMARK 500 GLU A 205 -43.48 61.76 REMARK 500 LYS A 219 -97.22 -54.72 REMARK 500 HIS A 220 -56.22 -11.54 REMARK 500 SER A 226 -72.01 -50.65 REMARK 500 ASN A 227 -66.36 76.11 REMARK 500 LYS A 234 54.21 -110.85 REMARK 500 CYS A 238 -72.07 -130.19 REMARK 500 LEU A 248 -84.35 -58.13 REMARK 500 ARG A 249 -49.91 -12.06 REMARK 500 VAL A 252 54.43 -58.99 REMARK 500 LYS A 253 -25.63 171.19 REMARK 500 VAL A 255 -104.14 -76.84 REMARK 500 HIS A 256 -152.90 -51.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT C 9 0.07 SIDE CHAIN REMARK 500 DG C 10 0.10 SIDE CHAIN REMARK 500 DG C 14 0.07 SIDE CHAIN REMARK 500 DG C 15 0.07 SIDE CHAIN REMARK 500 DT C 16 0.07 SIDE CHAIN REMARK 500 DC C 17 0.06 SIDE CHAIN REMARK 500 DG D 3 0.07 SIDE CHAIN REMARK 500 DG D 6 0.08 SIDE CHAIN REMARK 500 DA D 7 0.08 SIDE CHAIN REMARK 500 DC D 13 0.06 SIDE CHAIN REMARK 500 DG D 16 0.07 SIDE CHAIN REMARK 500 DG D 19 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 258 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 106 SG REMARK 620 2 CYS A 111 SG 100.6 REMARK 620 3 HIS A 124 NE2 95.7 112.4 REMARK 620 4 HIS A 129 NE2 98.1 147.9 91.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 259 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 139 SG REMARK 620 2 CYS A 144 SG 115.8 REMARK 620 3 HIS A 160 NE2 104.7 106.7 REMARK 620 4 HIS A 164 NE2 96.4 120.3 111.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 260 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 172 SG REMARK 620 2 CYS A 177 SG 102.7 REMARK 620 3 HIS A 190 NE2 98.1 119.5 REMARK 620 4 HIS A 194 NE2 115.9 111.7 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 261 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 202 SG REMARK 620 2 CYS A 207 SG 123.5 REMARK 620 3 HIS A 220 NE2 96.6 106.8 REMARK 620 4 HIS A 225 NE2 122.3 107.2 92.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 262 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 233 SG REMARK 620 2 CYS A 238 SG 105.9 REMARK 620 3 HIS A 251 NE2 130.7 107.2 REMARK 620 4 HIS A 256 NE2 118.3 113.0 79.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 262 DBREF 2GLI A 103 257 UNP P08151 GLI1_HUMAN 232 391 DBREF 2GLI C 1 21 PDB 2GLI 2GLI 1 21 DBREF 2GLI D 1 21 PDB 2GLI 2GLI 1 21 SEQRES 1 C 21 DT DT DT DC DG DT DC DT DT DG DG DG DT SEQRES 2 C 21 DG DG DT DC DC DA DC DG SEQRES 1 D 21 DA DC DG DT DG DG DA DC DC DA DC DC DC SEQRES 2 D 21 DA DA DG DA DC DG DA DA SEQRES 1 A 155 GLU THR ASP CYS ARG TRP ASP GLY CYS SER GLN GLU PHE SEQRES 2 A 155 ASP SER GLN GLU GLN LEU VAL HIS HIS ILE ASN SER GLU SEQRES 3 A 155 HIS ILE HIS GLY GLU ARG LYS GLU PHE VAL CYS HIS TRP SEQRES 4 A 155 GLY GLY CYS SER ARG GLU LEU ARG PRO PHE LYS ALA GLN SEQRES 5 A 155 TYR MET LEU VAL VAL HIS MET ARG ARG HIS THR GLY GLU SEQRES 6 A 155 LYS PRO HIS LYS CYS THR PHE GLU GLY CYS ARG LYS SER SEQRES 7 A 155 TYR SER ARG LEU GLU ASN LEU LYS THR HIS LEU ARG SER SEQRES 8 A 155 HIS THR GLY GLU LYS PRO TYR MET CYS GLU HIS GLU GLY SEQRES 9 A 155 CYS SER LYS ALA PHE SER ASN ALA SER ASP ARG ALA LYS SEQRES 10 A 155 HIS GLN ASN ARG THR HIS SER ASN GLU LYS PRO TYR VAL SEQRES 11 A 155 CYS LYS LEU PRO GLY CYS THR LYS ARG TYR THR ASP PRO SEQRES 12 A 155 SER SER LEU ARG LYS HIS VAL LYS THR VAL HIS GLY HET CO A 258 1 HET CO A 259 1 HET CO A 260 1 HET CO A 261 1 HET CO A 262 1 HETNAM CO COBALT (II) ION FORMUL 4 CO 5(CO 2+) FORMUL 9 HOH *44(H2 O) HELIX 1 1 SER A 117 HIS A 129 1 13 HELIX 2 2 ALA A 153 MET A 161 1 9 HELIX 3 3 MET A 161 GLY A 166 1 6 HELIX 4 4 ARG A 183 HIS A 194 1 12 HELIX 5 5 ARG A 217 THR A 224 1 8 HELIX 6 6 ASP A 244 HIS A 251 1 8 SHEET 1 A 2 TYR A 200 MET A 201 0 SHEET 2 A 2 ALA A 210 PHE A 211 -1 N PHE A 211 O TYR A 200 SHEET 1 B 2 TYR A 231 VAL A 232 0 SHEET 2 B 2 ARG A 241 TYR A 242 -1 O TYR A 242 N TYR A 231 LINK SG CYS A 106 CO CO A 258 1555 1555 2.28 LINK SG CYS A 111 CO CO A 258 1555 1555 2.11 LINK NE2 HIS A 124 CO CO A 258 1555 1555 2.06 LINK NE2 HIS A 129 CO CO A 258 1555 1555 1.99 LINK SG CYS A 139 CO CO A 259 1555 1555 2.28 LINK SG CYS A 144 CO CO A 259 1555 1555 2.60 LINK NE2 HIS A 160 CO CO A 259 1555 1555 2.01 LINK NE2 HIS A 164 CO CO A 259 1555 1555 1.92 LINK SG CYS A 172 CO CO A 260 1555 1555 2.33 LINK SG CYS A 177 CO CO A 260 1555 1555 2.00 LINK NE2 HIS A 190 CO CO A 260 1555 1555 2.04 LINK NE2 HIS A 194 CO CO A 260 1555 1555 1.69 LINK SG CYS A 202 CO CO A 261 1555 1555 2.33 LINK SG CYS A 207 CO CO A 261 1555 1555 2.22 LINK NE2 HIS A 220 CO CO A 261 1555 1555 2.05 LINK NE2 HIS A 225 CO CO A 261 1555 1555 2.29 LINK SG CYS A 233 CO CO A 262 1555 1555 2.21 LINK SG CYS A 238 CO CO A 262 1555 1555 2.61 LINK NE2 HIS A 251 CO CO A 262 1555 1555 2.01 LINK NE2 HIS A 256 CO CO A 262 1555 1555 1.44 SITE 1 AC1 4 CYS A 106 CYS A 111 HIS A 124 HIS A 129 SITE 1 AC2 4 CYS A 139 CYS A 144 HIS A 160 HIS A 164 SITE 1 AC3 4 CYS A 172 CYS A 177 HIS A 190 HIS A 194 SITE 1 AC4 4 CYS A 202 CYS A 207 HIS A 220 HIS A 225 SITE 1 AC5 4 CYS A 233 CYS A 238 HIS A 251 HIS A 256 CRYST1 149.000 50.200 45.400 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006711 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022026 0.00000