PDB Short entry for 2GP0 HEADER HYDROLASE 15-APR-06 2GP0 TITLE HEPTP CATALYTIC DOMAIN (RESIDUES 44-339), S225D MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (RESIDUES 65-360); COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE LC-PTP, HEMATOPOIETIC PROTEIN- COMPND 6 TYROSINE PHOSPHATASE, HEPTP; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEPTP, HUMAN HEMAPOIETIC TYROSINE PHOSPHATASE CATALYTIC DOMAIN, KEYWDS 2 PTPN7, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.PAGE REVDAT 6 30-AUG-23 2GP0 1 REMARK REVDAT 5 20-OCT-21 2GP0 1 REMARK SEQADV REVDAT 4 18-OCT-17 2GP0 1 REMARK REVDAT 3 13-JUL-11 2GP0 1 VERSN REVDAT 2 24-FEB-09 2GP0 1 VERSN REVDAT 1 09-MAY-06 2GP0 0 JRNL AUTH R.PAGE,T.MUSTELIN JRNL TITL HEPTP CATALYTIC DOMAIN (RESIDUES 44-339), S225D MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 33803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1689 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1958 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2267 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.278 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2415 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3296 ; 1.588 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 6.737 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;34.151 ;23.866 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 401 ;13.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.625 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1875 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1094 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1619 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 242 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.277 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1516 ; 1.089 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2391 ; 1.745 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1028 ; 2.377 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 897 ; 3.646 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : OSMIC REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1ZC0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: K/NA PHOSPHATE, AMMONIUM ACETATE, PH REMARK 280 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.04433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.08867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.06650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.11083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 10.02217 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 31 REMARK 465 GLY A 32 REMARK 465 SER A 33 REMARK 465 ASP A 34 REMARK 465 LYS A 35 REMARK 465 ILE A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 HIS A 41 REMARK 465 HIS A 42 REMARK 465 MET A 43 REMARK 465 GLY A 179 REMARK 465 LYS A 180 REMARK 465 GLU A 181 REMARK 465 LYS A 182 REMARK 465 GLU A 336 REMARK 465 PRO A 337 REMARK 465 SER A 338 REMARK 465 PRO A 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 44 CG OD1 ND2 REMARK 470 GLU A 48 CD OE1 OE2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 ASP A 125 CG OD1 OD2 REMARK 470 LEU A 176 CG CD1 CD2 REMARK 470 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 183 SG REMARK 470 GLU A 190 CD OE1 OE2 REMARK 470 GLN A 202 CD OE1 NE2 REMARK 470 GLU A 206 CD OE1 OE2 REMARK 470 GLU A 241 CD OE1 OE2 REMARK 470 GLU A 255 CD OE1 OE2 REMARK 470 HIS A 262 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 335 O HOH A 691 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 151 CG - SD - CE ANGL. DEV. = -10.5 DEGREES REMARK 500 LEU A 322 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 94 79.07 -109.49 REMARK 500 GLU A 190 -59.80 -130.10 REMARK 500 GLN A 220 -123.53 53.19 REMARK 500 ILE A 274 -39.55 -134.43 REMARK 500 ILE A 313 107.37 70.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 334 GLU A 335 141.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 436 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 437 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZC0 RELATED DB: PDB REMARK 900 HEPTP CATALYTIC DOMAIN (33-449), WT DBREF 2GP0 A 44 339 UNP P35236 PTN7_HUMAN 65 360 SEQADV 2GP0 MET A 31 UNP P35236 EXPRESSION TAG SEQADV 2GP0 GLY A 32 UNP P35236 EXPRESSION TAG SEQADV 2GP0 SER A 33 UNP P35236 EXPRESSION TAG SEQADV 2GP0 ASP A 34 UNP P35236 EXPRESSION TAG SEQADV 2GP0 LYS A 35 UNP P35236 EXPRESSION TAG SEQADV 2GP0 ILE A 36 UNP P35236 EXPRESSION TAG SEQADV 2GP0 HIS A 37 UNP P35236 EXPRESSION TAG SEQADV 2GP0 HIS A 38 UNP P35236 EXPRESSION TAG SEQADV 2GP0 HIS A 39 UNP P35236 EXPRESSION TAG SEQADV 2GP0 HIS A 40 UNP P35236 EXPRESSION TAG SEQADV 2GP0 HIS A 41 UNP P35236 EXPRESSION TAG SEQADV 2GP0 HIS A 42 UNP P35236 EXPRESSION TAG SEQADV 2GP0 MET A 43 UNP P35236 EXPRESSION TAG SEQADV 2GP0 ASP A 225 UNP P35236 SER 246 ENGINEERED MUTATION SEQRES 1 A 309 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 309 ASN THR PRO ARG GLU VAL THR LEU HIS PHE LEU ARG THR SEQRES 3 A 309 ALA GLY HIS PRO LEU THR ARG TRP ALA LEU GLN ARG GLN SEQRES 4 A 309 PRO PRO SER PRO LYS GLN LEU GLU GLU GLU PHE LEU LYS SEQRES 5 A 309 ILE PRO SER ASN PHE VAL SER PRO GLU ASP LEU ASP ILE SEQRES 6 A 309 PRO GLY HIS ALA SER LYS ASP ARG TYR LYS THR ILE LEU SEQRES 7 A 309 PRO ASN PRO GLN SER ARG VAL CYS LEU GLY ARG ALA GLN SEQRES 8 A 309 SER GLN GLU ASP GLY ASP TYR ILE ASN ALA ASN TYR ILE SEQRES 9 A 309 ARG GLY TYR ASP GLY LYS GLU LYS VAL TYR ILE ALA THR SEQRES 10 A 309 GLN GLY PRO MET PRO ASN THR VAL SER ASP PHE TRP GLU SEQRES 11 A 309 MET VAL TRP GLN GLU GLU VAL SER LEU ILE VAL MET LEU SEQRES 12 A 309 THR GLN LEU ARG GLU GLY LYS GLU LYS CYS VAL HIS TYR SEQRES 13 A 309 TRP PRO THR GLU GLU GLU THR TYR GLY PRO PHE GLN ILE SEQRES 14 A 309 ARG ILE GLN ASP MET LYS GLU CYS PRO GLU TYR THR VAL SEQRES 15 A 309 ARG GLN LEU THR ILE GLN TYR GLN GLU GLU ARG ARG ASP SEQRES 16 A 309 VAL LYS HIS ILE LEU PHE SER ALA TRP PRO ASP HIS GLN SEQRES 17 A 309 THR PRO GLU SER ALA GLY PRO LEU LEU ARG LEU VAL ALA SEQRES 18 A 309 GLU VAL GLU GLU SER PRO GLU THR ALA ALA HIS PRO GLY SEQRES 19 A 309 PRO ILE VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR SEQRES 20 A 309 GLY CYS PHE ILE ALA THR ARG ILE GLY CYS GLN GLN LEU SEQRES 21 A 309 LYS ALA ARG GLY GLU VAL ASP ILE LEU GLY ILE VAL CYS SEQRES 22 A 309 GLN LEU ARG LEU ASP ARG GLY GLY MET ILE GLN THR ALA SEQRES 23 A 309 GLU GLN TYR GLN PHE LEU HIS HIS THR LEU ALA LEU TYR SEQRES 24 A 309 ALA GLY GLN LEU PRO GLU GLU PRO SER PRO HET PO4 A 436 5 HET GOL A 437 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 O4 P 3- FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *297(H2 O) HELIX 1 1 THR A 45 ALA A 57 1 13 HELIX 2 2 ARG A 63 GLN A 69 1 7 HELIX 3 3 SER A 72 ILE A 83 1 12 HELIX 4 4 SER A 89 LEU A 93 5 5 HELIX 5 5 GLY A 97 ASP A 102 5 6 HELIX 6 6 ASN A 110 GLN A 112 5 3 HELIX 7 7 GLY A 136 LYS A 140 5 5 HELIX 8 8 MET A 151 ASN A 153 5 3 HELIX 9 9 THR A 154 GLU A 165 1 12 HELIX 10 10 SER A 242 SER A 256 1 15 HELIX 11 11 ILE A 274 GLY A 294 1 21 HELIX 12 12 ILE A 298 ARG A 309 1 12 HELIX 13 13 THR A 315 LEU A 333 1 19 SHEET 1 A 2 PRO A 60 THR A 62 0 SHEET 2 A 2 GLU A 295 ASP A 297 -1 O VAL A 296 N LEU A 61 SHEET 1 B 9 ARG A 114 CYS A 116 0 SHEET 2 B 9 TYR A 128 ILE A 134 -1 O ALA A 131 N VAL A 115 SHEET 3 B 9 TYR A 144 GLN A 148 -1 O TYR A 144 N ILE A 134 SHEET 4 B 9 ILE A 266 CYS A 270 1 O VAL A 268 N ILE A 145 SHEET 5 B 9 LEU A 169 LEU A 173 1 N VAL A 171 O VAL A 267 SHEET 6 B 9 GLU A 222 PHE A 231 1 O ILE A 229 N MET A 172 SHEET 7 B 9 TYR A 210 TYR A 219 -1 N ARG A 213 O HIS A 228 SHEET 8 B 9 PHE A 197 GLU A 206 -1 N LYS A 205 O VAL A 212 SHEET 9 B 9 GLU A 191 TYR A 194 -1 N GLU A 192 O ILE A 199 SITE 1 AC1 10 ASP A 236 CYS A 270 SER A 271 ALA A 272 SITE 2 AC1 10 ILE A 274 GLY A 275 ARG A 276 GLN A 314 SITE 3 AC1 10 GLU A 335 HOH A 439 SITE 1 AC2 8 GLN A 112 SER A 113 TYR A 133 GLU A 141 SITE 2 AC2 8 HOH A 447 HOH A 465 HOH A 517 HOH A 602 CRYST1 127.520 127.520 60.133 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007840 0.004530 0.000000 0.00000 SCALE2 0.000000 0.009050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016630 0.00000