PDB Short entry for 2GS0
HEADER    TRANSCRIPTION                           25-APR-06   2GS0              
TITLE     NMR STRUCTURE OF THE COMPLEX BETWEEN THE PH DOMAIN OF THE TFB1 SUBUNIT
TITLE    2 FROM TFIIH AND THE ACTIVATION DOMAIN OF P53                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 1;        
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: RNA POLYMERASE II TRANSCRIPTION FACTOR B P73 SUBUNIT, RNA   
COMPND   5 POLYMERASE II TRANSCRIPTION FACTOR B 73 KDA SUBUNIT;                 
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES;                                                       
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: CELLULAR TUMOR ANTIGEN P53;                                
COMPND  10 CHAIN: B;                                                            
COMPND  11 SYNONYM: TUMOR SUPPRESSOR P53;                                       
COMPND  12 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;                       
SOURCE   3 ORGANISM_COMMON: BAKER'S YEAST;                                      
SOURCE   4 ORGANISM_TAXID: 4932;                                                
SOURCE   5 GENE: TFB1;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: TOPP2;                                     
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T;                                  
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  13 ORGANISM_COMMON: HUMAN;                                              
SOURCE  14 ORGANISM_TAXID: 9606;                                                
SOURCE  15 GENE: TP53;                                                          
SOURCE  16 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  17 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE  18 EXPRESSION_SYSTEM_STRAIN: TOPP2;                                     
SOURCE  19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  20 EXPRESSION_SYSTEM_PLASMID: PGEX-2TK                                  
KEYWDS    P53, TFIIH, TFB1, ACTIVATION, TRANSCRIPTION, PH DOMAIN                
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    P.DI LELLO,T.N.JONES,B.D.NGUYEN,P.LEGAULT,J.G.OMICHINSKI              
REVDAT   3   20-OCT-21 2GS0    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 2GS0    1       VERSN                                    
REVDAT   1   31-OCT-06 2GS0    0                                                
JRNL        AUTH   P.DI LELLO,L.M.JENKINS,T.N.JONES,B.D.NGUYEN,T.HARA,          
JRNL        AUTH 2 H.YAMAGUCHI,J.D.DIKEAKOS,E.APPELLA,P.LEGAULT,J.G.OMICHINSKI  
JRNL        TITL   STRUCTURE OF THE TFB1/P53 COMPLEX: INSIGHTS INTO THE         
JRNL        TITL 2 INTERACTION BETWEEN THE P62/TFB1 SUBUNIT OF TFIIH AND THE    
JRNL        TITL 3 ACTIVATION DOMAIN OF P53.                                    
JRNL        REF    MOL.CELL                      V.  22   731 2006              
JRNL        REFN                   ISSN 1097-2765                               
JRNL        PMID   16793543                                                     
JRNL        DOI    10.1016/J.MOLCEL.2006.05.007                                 
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : VNMR 6.1.C, CNS 1.0                                  
REMARK   3   AUTHORS     : VARIAN (VNMR), A.T.BRUNGER, P.D.ADAMS, G.M.CLORE,    
REMARK   3                 W.L.DELANO, P.GROS, R.W.GROSSE-KUNSTLEVE, J.-        
REMARK   3                 S.JIANG, J.KUSZEWSKI, M.NILGES, N.S.PANNU,           
REMARK   3                 R.J.READ, L.M.RICE, T.SIMONSON, G.L.WARREN (CNS)     
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS:                                           
REMARK   3  THE THREE-DIMENSIONAL STRUCTURES OF THE COMPLEX TFB1/P53 WERE       
REMARK   3  DETERMINED USING A SET OF 1720 NOE-DERIVED DISTANCE RESTRAINTS,     
REMARK   3  138 BACKBONE DIHEDRAL ANGLE (PHI AND PSI) RESTRAINTS AND 26         
REMARK   3  DISTANCE RESTRAINTS FROM HYDROGEN BONDS.                            
REMARK   3  BECAUSE OF THE ABSENCE OF MEDIUM-RANGE, LONG-RANGE AND              
REMARK   3  INTERMOLECULAR NOES                                                 
REMARK   3  INVOLVING RESIDUES 20-44 AND 59-73 OF P53 (CHAIN B), THESE AMINO    
REMARK   3  ACIDS WERE NOT                                                      
REMARK   3  INCLUDED IN THE CALCULATIONS.                                       
REMARK   4                                                                      
REMARK   4 2GS0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000037482.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 300                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 20 MM SODIUM PHOSPHATE             
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.0 MM TFB1 U-15N, 1.0 MM P53      
REMARK 210                                   UNLABELED, 1.00 MM EDTA, 20 MM     
REMARK 210                                   PHOSPHATE BUFFER; 90% H2O, 10%     
REMARK 210                                   D2O; 1.0 MM TFB1 U-15N,13C, 1.0    
REMARK 210                                   MM P53 UNLABELED, 1.00 MM EDTA,    
REMARK 210                                   20 MM PHOSPHATE BUFFER; 100% D20;  
REMARK 210                                   1.0 MM P53 U-15N, 1.0 MM TFB1      
REMARK 210                                   UNLABELED, 1.00 MM EDTA, 20 MM     
REMARK 210                                   PHOSPHATE BUFFER; 90% H2O, 10%     
REMARK 210                                   D2O; 1.0 MM P53 U-15N, 1.0 MM      
REMARK 210                                   TFB1 UNLABELED, 1.00 MM EDTA, 20   
REMARK 210                                   MM PHOSPHATE BUFFER; 100% D20      
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D 15N-EDITED NOESY-HSQC; 3D 13C   
REMARK 210                                   -EDITED HMQC-NOESY; 3D 15N-13C {   
REMARK 210                                   F1}-FILTERED {F3}-EDITED NOESY;    
REMARK 210                                   2D 1H-15N HSQC; 2D CT-HMQC         
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ; 600 MHZ; 800 MHZ          
REMARK 210  SPECTROMETER MODEL             : UNITY                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 2.2, NMRVIEW 5.0.4, CNS    
REMARK 210                                   1.0                                
REMARK 210   METHOD USED                   : SIMULATED ANNEALING, WITH A        
REMARK 210                                   COMBINATION OF TORSION ANGLE AND   
REMARK 210                                   CARTESIAN DYNAMICS.                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 67                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR      
REMARK 210  SPECTROSCOPY.                                                       
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465   MODELS 1-20                                                        
REMARK 465     RES C SSSEQI                                                     
REMARK 465     SER B    20                                                      
REMARK 465     ASP B    21                                                      
REMARK 465     LEU B    22                                                      
REMARK 465     TRP B    23                                                      
REMARK 465     LYS B    24                                                      
REMARK 465     LEU B    25                                                      
REMARK 465     LEU B    26                                                      
REMARK 465     PRO B    27                                                      
REMARK 465     GLU B    28                                                      
REMARK 465     ASN B    29                                                      
REMARK 465     ASN B    30                                                      
REMARK 465     VAL B    31                                                      
REMARK 465     LEU B    32                                                      
REMARK 465     SER B    33                                                      
REMARK 465     PRO B    34                                                      
REMARK 465     LEU B    35                                                      
REMARK 465     PRO B    36                                                      
REMARK 465     SER B    37                                                      
REMARK 465     GLN B    38                                                      
REMARK 465     ALA B    39                                                      
REMARK 465     MET B    40                                                      
REMARK 465     ASP B    41                                                      
REMARK 465     ASP B    42                                                      
REMARK 465     LEU B    43                                                      
REMARK 465     MET B    44                                                      
REMARK 465     GLY B    59                                                      
REMARK 465     PRO B    60                                                      
REMARK 465     ASP B    61                                                      
REMARK 465     GLU B    62                                                      
REMARK 465     ALA B    63                                                      
REMARK 465     PRO B    64                                                      
REMARK 465     ARG B    65                                                      
REMARK 465     MET B    66                                                      
REMARK 465     PRO B    67                                                      
REMARK 465     GLU B    68                                                      
REMARK 465     ALA B    69                                                      
REMARK 465     ALA B    70                                                      
REMARK 465     PRO B    71                                                      
REMARK 465     PRO B    72                                                      
REMARK 465     VAL B    73                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   4      129.28    177.59                                   
REMARK 500  1 ALA A   6      100.57    -43.70                                   
REMARK 500  1 SER A  31      167.18    -45.44                                   
REMARK 500  1 ILE A  45      101.50    -47.27                                   
REMARK 500  1 VAL A  66     -162.13   -121.55                                   
REMARK 500  1 ASP A  67       55.41   -175.99                                   
REMARK 500  1 LYS A  71       92.03     59.62                                   
REMARK 500  1 PRO A  82      161.66    -45.61                                   
REMARK 500  1 GLU B  56     -166.21     44.50                                   
REMARK 500  2 SER A   2      -39.21   -177.68                                   
REMARK 500  2 SER A   4      114.96   -178.61                                   
REMARK 500  2 ALA A   6      121.13    -32.71                                   
REMARK 500  2 SER A  31      156.80    -44.54                                   
REMARK 500  2 ILE A  45       91.91    -56.20                                   
REMARK 500  2 VAL A  66     -161.92   -113.30                                   
REMARK 500  2 ASP A  67       67.79   -176.97                                   
REMARK 500  2 LYS A  71       92.99     60.38                                   
REMARK 500  3 SER A   2      114.55     61.04                                   
REMARK 500  3 SER A   4      161.73    177.60                                   
REMARK 500  3 ALA A   6      103.60    -46.64                                   
REMARK 500  3 SER A  31      168.02    -46.11                                   
REMARK 500  3 ILE A  45       90.59    -56.64                                   
REMARK 500  3 VAL A  66     -162.13   -105.20                                   
REMARK 500  3 ASP A  67       68.99   -173.55                                   
REMARK 500  3 LYS A  71       92.64     60.26                                   
REMARK 500  4 SER A   2      -60.96   -169.26                                   
REMARK 500  4 SER A   4      115.73    179.14                                   
REMARK 500  4 ALA A   6      120.09    -32.93                                   
REMARK 500  4 SER A  31      158.36    -44.42                                   
REMARK 500  4 ILE A  45       91.53    -56.04                                   
REMARK 500  4 VAL A  66     -167.55    -79.62                                   
REMARK 500  4 ASP A  67       59.51   -148.44                                   
REMARK 500  4 LYS A  71       95.22     63.43                                   
REMARK 500  4 GLU B  56     -166.39     45.00                                   
REMARK 500  5 SER A   2      -83.08     61.22                                   
REMARK 500  5 SER A  31      164.36    -45.37                                   
REMARK 500  5 ILE A  45       93.53    -51.17                                   
REMARK 500  5 ASP A  67       70.97   -175.14                                   
REMARK 500  5 LYS A  71       94.32     62.29                                   
REMARK 500  6 SER A   2      112.43     60.75                                   
REMARK 500  6 SER A   4      162.41    178.11                                   
REMARK 500  6 ALA A   6      102.87    -46.88                                   
REMARK 500  6 SER A  31      165.37    -45.47                                   
REMARK 500  6 ILE A  45       98.80    -49.62                                   
REMARK 500  6 MET A  59      147.22   -172.85                                   
REMARK 500  6 VAL A  66     -162.31   -121.16                                   
REMARK 500  6 ASP A  67       71.11   -177.67                                   
REMARK 500  6 LYS A  71       93.09     60.67                                   
REMARK 500  7 SER A   2      103.85     57.32                                   
REMARK 500  7 SER A   4      172.99    178.47                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     168 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  2GS0 A    1   115  UNP    P32776   TFB1_YEAST       1    115             
DBREF  2GS0 B   20    73  UNP    P04637   P53_HUMAN       20     73             
SEQADV 2GS0 PRO A    1  UNP  P32776    MET     1 ENGINEERED MUTATION            
SEQRES   1 A  115  PRO SER HIS SER GLY ALA ALA ILE PHE GLU LYS VAL SER          
SEQRES   2 A  115  GLY ILE ILE ALA ILE ASN GLU ASP VAL SER PRO ALA GLU          
SEQRES   3 A  115  LEU THR TRP ARG SER THR ASP GLY ASP LYS VAL HIS THR          
SEQRES   4 A  115  VAL VAL LEU SER THR ILE ASP LYS LEU GLN ALA THR PRO          
SEQRES   5 A  115  ALA SER SER GLU LYS MET MET LEU ARG LEU ILE GLY LYS          
SEQRES   6 A  115  VAL ASP GLU SER LYS LYS ARG LYS ASP ASN GLU GLY ASN          
SEQRES   7 A  115  GLU VAL VAL PRO LYS PRO GLN ARG HIS MET PHE SER PHE          
SEQRES   8 A  115  ASN ASN ARG THR VAL MET ASP ASN ILE LYS MET THR LEU          
SEQRES   9 A  115  GLN GLN ILE ILE SER ARG TYR LYS ASP ALA ASP                  
SEQRES   1 B   54  SER ASP LEU TRP LYS LEU LEU PRO GLU ASN ASN VAL LEU          
SEQRES   2 B   54  SER PRO LEU PRO SER GLN ALA MET ASP ASP LEU MET LEU          
SEQRES   3 B   54  SER PRO ASP ASP ILE GLU GLN TRP PHE THR GLU ASP PRO          
SEQRES   4 B   54  GLY PRO ASP GLU ALA PRO ARG MET PRO GLU ALA ALA PRO          
SEQRES   5 B   54  PRO VAL                                                      
HELIX    1   1 ASP A   67  LYS A   71  5                                   5    
HELIX    2   2 ASN A   93  ASP A  115  1                                  23    
HELIX    3   3 SER B   46  GLU B   56  1                                  11    
SHEET    1   A 7 VAL A  37  VAL A  41  0                                        
SHEET    2   A 7 GLU A  26  SER A  31 -1  N  LEU A  27   O  VAL A  40           
SHEET    3   A 7 VAL A  12  ASN A  19 -1  N  ILE A  15   O  ARG A  30           
SHEET    4   A 7 SER A   4  PHE A   9 -1  N  GLY A   5   O  ILE A  16           
SHEET    5   A 7 GLN A  85  SER A  90 -1  O  SER A  90   N  ILE A   8           
SHEET    6   A 7 LEU A  60  GLY A  64 -1  N  LEU A  60   O  PHE A  89           
SHEET    7   A 7 ILE A  45  ALA A  50 -1  N  GLN A  49   O  ARG A  61           
SHEET    1   B 2 ARG A  72  LYS A  73  0                                        
SHEET    2   B 2 GLU A  79  VAL A  80 -1  O  VAL A  80   N  ARG A  72           
CISPEP   1 SER A   23    PRO A   24          1        -0.18                     
CISPEP   2 SER A   23    PRO A   24          2        -0.10                     
CISPEP   3 SER A   23    PRO A   24          3         0.10                     
CISPEP   4 SER A   23    PRO A   24          4        -0.04                     
CISPEP   5 SER A   23    PRO A   24          5         0.14                     
CISPEP   6 SER A   23    PRO A   24          6         0.00                     
CISPEP   7 SER A   23    PRO A   24          7         0.00                     
CISPEP   8 SER A   23    PRO A   24          8        -0.07                     
CISPEP   9 SER A   23    PRO A   24          9        -0.08                     
CISPEP  10 SER A   23    PRO A   24         10         0.09                     
CISPEP  11 SER A   23    PRO A   24         11        -0.02                     
CISPEP  12 SER A   23    PRO A   24         12         0.08                     
CISPEP  13 SER A   23    PRO A   24         13         0.12                     
CISPEP  14 SER A   23    PRO A   24         14         0.01                     
CISPEP  15 SER A   23    PRO A   24         15        -0.01                     
CISPEP  16 SER A   23    PRO A   24         16        -0.15                     
CISPEP  17 SER A   23    PRO A   24         17         0.13                     
CISPEP  18 SER A   23    PRO A   24         18        -0.06                     
CISPEP  19 SER A   23    PRO A   24         19        -0.05                     
CISPEP  20 SER A   23    PRO A   24         20         0.05                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000