PDB Short entry for 2GT6
HEADER    METAL TRANSPORT                         27-APR-06   2GT6              
TITLE     SOLUTION STRUCTURE OF HUMAN CU(I) SCO1                                
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: SCO1 PROTEIN HOMOLOG, MITOCHONDRIAL;                       
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 132-301);                      
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: SCO1, SCOD1;                                                   
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 GOLD;                              
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PETG-30A                                  
KEYWDS    THIOREDOXIN-LIKE FOLD, METALLOPROTEIN, STRUCTURAL GENOMICS,           
KEYWDS   2 STRUCTURAL PROTEOMICS IN EUROPE, SPINE, METAL TRANSPORT              
EXPDTA    SOLUTION NMR                                                          
MDLTYP    MINIMIZED AVERAGE                                                     
AUTHOR    L.BANCI,I.BERTINI,V.CALDERONE,S.CIOFI-BAFFONI,S.MANGANI,P.PALUMAA,    
AUTHOR   2 M.MARTINELLI,S.WANG,STRUCTURAL PROTEOMICS IN EUROPE (SPINE)          
REVDAT   4   09-MAR-22 2GT6    1       REMARK SEQADV LINK                       
REVDAT   3   24-FEB-09 2GT6    1       VERSN                                    
REVDAT   2   20-JUN-06 2GT6    1       JRNL                                     
REVDAT   1   06-JUN-06 2GT6    0                                                
JRNL        AUTH   L.BANCI,I.BERTINI,V.CALDERONE,S.CIOFI-BAFFONI,S.MANGANI,     
JRNL        AUTH 2 M.MARTINELLI,P.PALUMAA,S.WANG                                
JRNL        TITL   A HINT FOR THE FUNCTION OF HUMAN SCO1 FROM DIFFERENT         
JRNL        TITL 2 STRUCTURES.                                                  
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 103  8595 2006              
JRNL        REFN                   ISSN 0027-8424                               
JRNL        PMID   16735468                                                     
JRNL        DOI    10.1073/PNAS.0601375103                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 3.5, AMBER 8.0                               
REMARK   3   AUTHORS     :                                                      
REMARK   3  PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH,         
REMARK   3  WEINER,KOLLMAN (AMBER)                                              
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2GT6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000037518.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.2                                
REMARK 210  IONIC STRENGTH                 : 50 MM SODIUM PHOSPHATE             
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1MM HUMAN CU(I) SCO1 U-15N, 13C,   
REMARK 210                                   50MM PHOSPHATE BUFFER NA, 1MM      
REMARK 210                                   DTT, 90% H2O, 10% D2O; 1MM HUMAN   
REMARK 210                                   CU(I) SCO1 U-15N, 50MM PHOSPHATE   
REMARK 210                                   BUFFER NA, 1MM DTT, 90% H2O, 10%   
REMARK 210                                   D2O                                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_13C-SEPARATED_NOESY; 2D         
REMARK 210                                   NOESY; 3D_15N-SEPARATED_NOESY;     
REMARK 210                                   CBCA(CO)NH; HNCA; HN(CO)CA         
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ; 900 MHZ; 500 MHZ          
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : XWINNMR 3.5, CARA 2.1, DYANA 1.5   
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : NULL                               
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 1                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : NULL                               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR      
REMARK 210  SPECTROSCOPY.                                                       
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    THR A 131   CB    THR A 131   OG1    -0.232                       
REMARK 500    ILE A 262   CB    ILE A 262   CG2    -0.291                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ARG A 231   NE  -  CZ  -  NH1 ANGL. DEV. =   3.0 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    LYS A 133      134.05   -175.87                                   
REMARK 500    PRO A 170     -130.04    -78.49                                   
REMARK 500    THR A 191      -36.12     74.17                                   
REMARK 500    PRO A 205       31.94    -75.24                                   
REMARK 500    ARG A 207      -23.41    168.39                                   
REMARK 500    SER A 221      132.46    174.67                                   
REMARK 500    GLU A 252      -42.93     60.29                                   
REMARK 500    ASP A 253      -56.58   -165.60                                   
REMARK 500    GLU A 254       12.41   -154.38                                   
REMARK 500    TYR A 256       83.69   -176.37                                   
REMARK 500    ILE A 262       73.68     34.81                                   
REMARK 500    ASP A 270      -55.93   -173.47                                   
REMARK 500    GLN A 279       78.24    -65.49                                   
REMARK 500    ASN A 280      -44.70   -170.59                                   
REMARK 500    LYS A 299     -141.84     71.95                                   
REMARK 500    LYS A 300       34.09   -145.73                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                         
REMARK 500                                                                      
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH          
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED           
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND               
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                  
REMARK 500                                 MODEL     OMEGA                      
REMARK 500 PRO A  269     ASP A  270                 -146.06                    
REMARK 500 ARG A  298     LYS A  299                  126.70                    
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             CU1 A 302  CU                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 169   SG                                                     
REMARK 620 2 CYS A 173   SG  116.8                                              
REMARK 620 3 HIS A 260   NE2 116.5 116.3                                        
REMARK 620 N                    1     2                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 302                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2GQK   RELATED DB: PDB                                   
REMARK 900 THE FAMILY OF 30 STRUCTURES OF THE SAME PROTEIN COMPLEXED WITH       
REMARK 900 NI(II) IONS.                                                         
REMARK 900 RELATED ID: 2GQL   RELATED DB: PDB                                   
REMARK 900 THE AVERAGE MINIMIZED STRUCTURE OF THE SAME PROTEIN COMPLEXED WITH   
REMARK 900 NI(II) IONS.                                                         
REMARK 900 RELATED ID: 2GQM   RELATED DB: PDB                                   
REMARK 900 THE FAMILY OF 30 STRUCTURES OF THE SAME PROTEIN COMPLEXED WITH CU(I) 
REMARK 900 IONS.                                                                
REMARK 900 RELATED ID: 2GT5   RELATED DB: PDB                                   
REMARK 900 THE FAMILY OF 30 STRUCTURES OF THE SAME PROTEIN, APO FORM.           
REMARK 900 RELATED ID: CIRMMP13   RELATED DB: TARGETDB                          
DBREF  2GT6 A  132   301  UNP    O75880   SCO1_HUMAN     132    301             
SEQADV 2GT6 SER A  129  UNP  O75880              CLONING ARTIFACT               
SEQADV 2GT6 PHE A  130  UNP  O75880              CLONING ARTIFACT               
SEQADV 2GT6 THR A  131  UNP  O75880              CLONING ARTIFACT               
SEQRES   1 A  173  SER PHE THR GLY LYS PRO LEU LEU GLY GLY PRO PHE SER          
SEQRES   2 A  173  LEU THR THR HIS THR GLY GLU ARG LYS THR ASP LYS ASP          
SEQRES   3 A  173  TYR LEU GLY GLN TRP LEU LEU ILE TYR PHE GLY PHE THR          
SEQRES   4 A  173  HIS CYS PRO ASP VAL CYS PRO GLU GLU LEU GLU LYS MET          
SEQRES   5 A  173  ILE GLN VAL VAL ASP GLU ILE ASP SER ILE THR THR LEU          
SEQRES   6 A  173  PRO ASP LEU THR PRO LEU PHE ILE SER ILE ASP PRO GLU          
SEQRES   7 A  173  ARG ASP THR LYS GLU ALA ILE ALA ASN TYR VAL LYS GLU          
SEQRES   8 A  173  PHE SER PRO LYS LEU VAL GLY LEU THR GLY THR ARG GLU          
SEQRES   9 A  173  GLU VAL ASP GLN VAL ALA ARG ALA TYR ARG VAL TYR TYR          
SEQRES  10 A  173  SER PRO GLY PRO LYS ASP GLU ASP GLU ASP TYR ILE VAL          
SEQRES  11 A  173  ASP HIS THR ILE ILE MET TYR LEU ILE GLY PRO ASP GLY          
SEQRES  12 A  173  GLU PHE LEU ASP TYR PHE GLY GLN ASN LYS ARG LYS GLY          
SEQRES  13 A  173  GLU ILE ALA ALA SER ILE ALA THR HIS MET ARG PRO TYR          
SEQRES  14 A  173  ARG LYS LYS SER                                              
HET    CU1  A 302       1                                                       
HETNAM     CU1 COPPER (I) ION                                                   
FORMUL   2  CU1    CU 1+                                                        
HELIX    1   1 ASP A  152  LEU A  156  5                                   5    
HELIX    2   2 ASP A  171  ILE A  190  1                                  20    
HELIX    3   3 THR A  209  SER A  221  1                                  13    
HELIX    4   4 THR A  230  TYR A  241  1                                  12    
HELIX    5   5 ARG A  282  MET A  294  1                                  13    
SHEET    1   A 7 ARG A 149  LYS A 150  0                                        
SHEET    2   A 7 LEU A 142  THR A 144 -1  N  LEU A 142   O  LYS A 150           
SHEET    3   A 7 VAL A 225  THR A 228 -1  O  THR A 228   N  THR A 143           
SHEET    4   A 7 LEU A 196  SER A 202  1  N  PHE A 200   O  LEU A 227           
SHEET    5   A 7 TRP A 159  GLY A 165  1  N  TYR A 163   O  ILE A 201           
SHEET    6   A 7 ILE A 263  ILE A 267 -1  O  TYR A 265   N  ILE A 162           
SHEET    7   A 7 PHE A 273  GLY A 278 -1  O  PHE A 277   N  MET A 264           
SHEET    1   B 2 TYR A 245  PRO A 247  0                                        
SHEET    2   B 2 VAL A 258  HIS A 260 -1  O  ASP A 259   N  SER A 246           
LINK         SG  CYS A 169                CU   CU1 A 302     1555   1555  2.40  
LINK         SG  CYS A 173                CU   CU1 A 302     1555   1555  2.41  
LINK         NE2 HIS A 260                CU   CU1 A 302     1555   1555  2.08  
SITE     1 AC1  4 PHE A 166  CYS A 169  CYS A 173  HIS A 260                    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000