PDB Short entry for 2GTR HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-APR-06 2GTR TITLE HUMAN CHROMODOMAIN Y-LIKE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMODOMAIN Y-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CDY-LIKE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDYL, CDYL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHROMODOMAIN Y-LIKE PROTEIN, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.MIN,H.WU,T.ANTOSHENKO,P.LOPPNAU,J.WEIGELT,M.SUNDSTROM, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,A.N.PLOTNIKOV,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 3 30-AUG-23 2GTR 1 REMARK REVDAT 2 24-FEB-09 2GTR 1 VERSN REVDAT 1 09-MAY-06 2GTR 0 JRNL AUTH T.ANTOSHENKO,J.MIN,H.WU,P.LOPPNAU,J.WEIGELT,M.SUNDSTROM, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,A.N.PLOTNIKOV JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN CHROMODOMAIN Y-LIKE PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 69775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3674 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3565 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 532 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.862 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6067 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8185 ; 1.668 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 769 ; 6.314 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 253 ;35.943 ;24.348 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1124 ;16.533 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;18.857 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 932 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4469 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2929 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4229 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 470 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.261 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.287 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3948 ; 1.209 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6169 ; 1.909 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2412 ; 3.149 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2016 ; 4.866 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GTR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU), DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73681 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 39.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2FBM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% ISOPROPANOL, 0.2M NACITRATE, 0.1M REMARK 280 NACACODYLATE PH 5.0., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.10350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.36950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.10350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 66.36950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 TYR A 2 REMARK 465 PHE A 261 REMARK 465 ALA B 1 REMARK 465 TYR B 2 REMARK 465 ARG B 3 REMARK 465 ALA C 1 REMARK 465 TYR C 2 REMARK 465 TYR C 253 REMARK 465 LEU C 254 REMARK 465 GLN C 255 REMARK 465 ARG C 256 REMARK 465 LYS C 257 REMARK 465 ILE C 258 REMARK 465 ASP C 259 REMARK 465 GLU C 260 REMARK 465 PHE C 261 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 MET C 250 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 356 O HOH A 497 2.10 REMARK 500 OD1 ASN C 109 ND2 ASN C 129 2.12 REMARK 500 O HOH A 343 O HOH A 487 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 26 NH2 ARG B 74 4444 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 64 CB CYS A 64 SG -0.148 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 21 67.61 -155.58 REMARK 500 ASP A 48 -166.40 -100.16 REMARK 500 CYS A 63 116.96 -168.33 REMARK 500 PRO A 137 47.02 -80.87 REMARK 500 SER B 21 72.99 -158.73 REMARK 500 CYS B 63 115.99 -163.85 REMARK 500 ASP B 77 -78.40 -64.04 REMARK 500 PRO B 137 49.63 -89.02 REMARK 500 LYS B 252 -51.34 -17.59 REMARK 500 SER C 21 65.58 -158.81 REMARK 500 CYS C 63 118.88 -171.34 REMARK 500 THR C 76 35.10 -95.34 REMARK 500 ASP C 78 86.48 168.42 REMARK 500 ARG C 79 -71.29 -43.15 REMARK 500 GLN C 245 40.94 -96.99 REMARK 500 MET C 250 104.03 -56.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 251 LYS B 252 149.99 REMARK 500 MET C 250 LEU C 251 -146.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 2GTR A 1 261 UNP Q9Y232 CDYL1_HUMAN 338 598 DBREF 2GTR B 1 261 UNP Q9Y232 CDYL1_HUMAN 338 598 DBREF 2GTR C 1 261 UNP Q9Y232 CDYL1_HUMAN 338 598 SEQRES 1 A 261 ALA TYR ARG TYR ARG ASP ILE VAL VAL ARG LYS GLN ASP SEQRES 2 A 261 GLY PHE THR HIS ILE LEU LEU SER THR LYS SER SER GLU SEQRES 3 A 261 ASN ASN SER LEU ASN PRO GLU VAL MET ARG GLU VAL GLN SEQRES 4 A 261 SER ALA LEU SER THR ALA ALA ALA ASP ASP SER LYS LEU SEQRES 5 A 261 VAL LEU LEU SER ALA VAL GLY SER VAL PHE CYS CYS GLY SEQRES 6 A 261 LEU ASP PHE ILE TYR PHE ILE ARG ARG LEU THR ASP ASP SEQRES 7 A 261 ARG LYS ARG GLU SER THR LYS MET ALA GLU ALA ILE ARG SEQRES 8 A 261 ASN PHE VAL ASN THR PHE ILE GLN PHE LYS LYS PRO ILE SEQRES 9 A 261 ILE VAL ALA VAL ASN GLY PRO ALA ILE GLY LEU GLY ALA SEQRES 10 A 261 SER ILE LEU PRO LEU CYS ASP VAL VAL TRP ALA ASN GLU SEQRES 11 A 261 LYS ALA TRP PHE GLN THR PRO TYR THR THR PHE GLY GLN SEQRES 12 A 261 SER PRO ASP GLY CYS SER THR VAL MET PHE PRO LYS ILE SEQRES 13 A 261 MET GLY GLY ALA SER ALA ASN GLU MET LEU LEU SER GLY SEQRES 14 A 261 ARG LYS LEU THR ALA GLN GLU ALA CYS GLY LYS GLY LEU SEQRES 15 A 261 VAL SER GLN VAL PHE TRP PRO GLY THR PHE THR GLN GLU SEQRES 16 A 261 VAL MET VAL ARG ILE LYS GLU LEU ALA SER CYS ASN PRO SEQRES 17 A 261 VAL VAL LEU GLU GLU SER LYS ALA LEU VAL ARG CYS ASN SEQRES 18 A 261 MET LYS MET GLU LEU GLU GLN ALA ASN GLU ARG GLU CYS SEQRES 19 A 261 GLU VAL LEU LYS LYS ILE TRP GLY SER ALA GLN GLY MET SEQRES 20 A 261 ASP SER MET LEU LYS TYR LEU GLN ARG LYS ILE ASP GLU SEQRES 21 A 261 PHE SEQRES 1 B 261 ALA TYR ARG TYR ARG ASP ILE VAL VAL ARG LYS GLN ASP SEQRES 2 B 261 GLY PHE THR HIS ILE LEU LEU SER THR LYS SER SER GLU SEQRES 3 B 261 ASN ASN SER LEU ASN PRO GLU VAL MET ARG GLU VAL GLN SEQRES 4 B 261 SER ALA LEU SER THR ALA ALA ALA ASP ASP SER LYS LEU SEQRES 5 B 261 VAL LEU LEU SER ALA VAL GLY SER VAL PHE CYS CYS GLY SEQRES 6 B 261 LEU ASP PHE ILE TYR PHE ILE ARG ARG LEU THR ASP ASP SEQRES 7 B 261 ARG LYS ARG GLU SER THR LYS MET ALA GLU ALA ILE ARG SEQRES 8 B 261 ASN PHE VAL ASN THR PHE ILE GLN PHE LYS LYS PRO ILE SEQRES 9 B 261 ILE VAL ALA VAL ASN GLY PRO ALA ILE GLY LEU GLY ALA SEQRES 10 B 261 SER ILE LEU PRO LEU CYS ASP VAL VAL TRP ALA ASN GLU SEQRES 11 B 261 LYS ALA TRP PHE GLN THR PRO TYR THR THR PHE GLY GLN SEQRES 12 B 261 SER PRO ASP GLY CYS SER THR VAL MET PHE PRO LYS ILE SEQRES 13 B 261 MET GLY GLY ALA SER ALA ASN GLU MET LEU LEU SER GLY SEQRES 14 B 261 ARG LYS LEU THR ALA GLN GLU ALA CYS GLY LYS GLY LEU SEQRES 15 B 261 VAL SER GLN VAL PHE TRP PRO GLY THR PHE THR GLN GLU SEQRES 16 B 261 VAL MET VAL ARG ILE LYS GLU LEU ALA SER CYS ASN PRO SEQRES 17 B 261 VAL VAL LEU GLU GLU SER LYS ALA LEU VAL ARG CYS ASN SEQRES 18 B 261 MET LYS MET GLU LEU GLU GLN ALA ASN GLU ARG GLU CYS SEQRES 19 B 261 GLU VAL LEU LYS LYS ILE TRP GLY SER ALA GLN GLY MET SEQRES 20 B 261 ASP SER MET LEU LYS TYR LEU GLN ARG LYS ILE ASP GLU SEQRES 21 B 261 PHE SEQRES 1 C 261 ALA TYR ARG TYR ARG ASP ILE VAL VAL ARG LYS GLN ASP SEQRES 2 C 261 GLY PHE THR HIS ILE LEU LEU SER THR LYS SER SER GLU SEQRES 3 C 261 ASN ASN SER LEU ASN PRO GLU VAL MET ARG GLU VAL GLN SEQRES 4 C 261 SER ALA LEU SER THR ALA ALA ALA ASP ASP SER LYS LEU SEQRES 5 C 261 VAL LEU LEU SER ALA VAL GLY SER VAL PHE CYS CYS GLY SEQRES 6 C 261 LEU ASP PHE ILE TYR PHE ILE ARG ARG LEU THR ASP ASP SEQRES 7 C 261 ARG LYS ARG GLU SER THR LYS MET ALA GLU ALA ILE ARG SEQRES 8 C 261 ASN PHE VAL ASN THR PHE ILE GLN PHE LYS LYS PRO ILE SEQRES 9 C 261 ILE VAL ALA VAL ASN GLY PRO ALA ILE GLY LEU GLY ALA SEQRES 10 C 261 SER ILE LEU PRO LEU CYS ASP VAL VAL TRP ALA ASN GLU SEQRES 11 C 261 LYS ALA TRP PHE GLN THR PRO TYR THR THR PHE GLY GLN SEQRES 12 C 261 SER PRO ASP GLY CYS SER THR VAL MET PHE PRO LYS ILE SEQRES 13 C 261 MET GLY GLY ALA SER ALA ASN GLU MET LEU LEU SER GLY SEQRES 14 C 261 ARG LYS LEU THR ALA GLN GLU ALA CYS GLY LYS GLY LEU SEQRES 15 C 261 VAL SER GLN VAL PHE TRP PRO GLY THR PHE THR GLN GLU SEQRES 16 C 261 VAL MET VAL ARG ILE LYS GLU LEU ALA SER CYS ASN PRO SEQRES 17 C 261 VAL VAL LEU GLU GLU SER LYS ALA LEU VAL ARG CYS ASN SEQRES 18 C 261 MET LYS MET GLU LEU GLU GLN ALA ASN GLU ARG GLU CYS SEQRES 19 C 261 GLU VAL LEU LYS LYS ILE TRP GLY SER ALA GLN GLY MET SEQRES 20 C 261 ASP SER MET LEU LYS TYR LEU GLN ARG LYS ILE ASP GLU SEQRES 21 C 261 PHE FORMUL 4 HOH *532(H2 O) HELIX 1 1 ASN A 31 ASP A 48 1 18 HELIX 2 2 ASP A 67 ASP A 78 1 12 HELIX 3 3 ASP A 78 PHE A 100 1 23 HELIX 4 4 GLY A 114 ILE A 119 1 6 HELIX 5 5 LEU A 120 CYS A 123 5 4 HELIX 6 6 CYS A 148 GLY A 158 1 11 HELIX 7 7 GLY A 158 GLY A 169 1 12 HELIX 8 8 ALA A 174 LYS A 180 1 7 HELIX 9 9 TRP A 188 GLY A 190 5 3 HELIX 10 10 THR A 191 SER A 205 1 15 HELIX 11 11 ASN A 207 CYS A 220 1 14 HELIX 12 12 MET A 222 SER A 243 1 22 HELIX 13 13 MET A 247 GLU A 260 1 14 HELIX 14 14 ASN B 31 ASP B 48 1 18 HELIX 15 15 ASP B 67 PHE B 100 1 34 HELIX 16 16 GLY B 114 ILE B 119 1 6 HELIX 17 17 LEU B 120 CYS B 123 5 4 HELIX 18 18 TYR B 138 GLY B 142 5 5 HELIX 19 19 CYS B 148 GLY B 158 1 11 HELIX 20 20 GLY B 158 GLY B 169 1 12 HELIX 21 21 ALA B 174 LYS B 180 1 7 HELIX 22 22 TRP B 188 SER B 205 1 18 HELIX 23 23 ASN B 207 CYS B 220 1 14 HELIX 24 24 MET B 222 GLY B 242 1 21 HELIX 25 25 MET B 250 ARG B 256 5 7 HELIX 26 26 LYS B 257 PHE B 261 5 5 HELIX 27 27 ASN C 31 ASP C 48 1 18 HELIX 28 28 ASP C 67 THR C 76 1 10 HELIX 29 29 ASP C 78 PHE C 100 1 23 HELIX 30 30 GLY C 114 ILE C 119 1 6 HELIX 31 31 LEU C 120 CYS C 123 5 4 HELIX 32 32 PRO C 137 GLY C 142 1 6 HELIX 33 33 CYS C 148 GLY C 158 1 11 HELIX 34 34 GLY C 158 GLY C 169 1 12 HELIX 35 35 ALA C 174 LYS C 180 1 7 HELIX 36 36 THR C 191 SER C 205 1 15 HELIX 37 37 ASN C 207 CYS C 220 1 14 HELIX 38 38 MET C 222 SER C 243 1 22 HELIX 39 39 ALA C 244 MET C 247 5 4 SHEET 1 A 6 ILE A 7 GLN A 12 0 SHEET 2 A 6 PHE A 15 LEU A 20 -1 O HIS A 17 N ARG A 10 SHEET 3 A 6 VAL A 53 ALA A 57 1 O LEU A 54 N THR A 16 SHEET 4 A 6 ILE A 104 VAL A 108 1 O ILE A 105 N VAL A 53 SHEET 5 A 6 VAL A 125 ASN A 129 1 O TRP A 127 N VAL A 106 SHEET 6 A 6 GLN A 185 PHE A 187 1 O PHE A 187 N ALA A 128 SHEET 1 B 2 SER A 29 LEU A 30 0 SHEET 2 B 2 GLY A 65 LEU A 66 1 O GLY A 65 N LEU A 30 SHEET 1 C 3 ALA A 112 ILE A 113 0 SHEET 2 C 3 TRP A 133 GLN A 135 1 O TRP A 133 N ALA A 112 SHEET 3 C 3 LEU A 172 THR A 173 -1 O LEU A 172 N PHE A 134 SHEET 1 D 6 ILE B 7 GLN B 12 0 SHEET 2 D 6 PHE B 15 LEU B 20 -1 O HIS B 17 N ARG B 10 SHEET 3 D 6 VAL B 53 ALA B 57 1 O LEU B 54 N ILE B 18 SHEET 4 D 6 ILE B 104 VAL B 108 1 O ILE B 105 N LEU B 55 SHEET 5 D 6 VAL B 125 ASN B 129 1 O TRP B 127 N VAL B 108 SHEET 6 D 6 GLN B 185 PHE B 187 1 O PHE B 187 N ALA B 128 SHEET 1 E 3 ALA B 112 ILE B 113 0 SHEET 2 E 3 TRP B 133 GLN B 135 1 O TRP B 133 N ALA B 112 SHEET 3 E 3 LYS B 171 THR B 173 -1 O LEU B 172 N PHE B 134 SHEET 1 F 6 ILE C 7 GLN C 12 0 SHEET 2 F 6 PHE C 15 LEU C 20 -1 O HIS C 17 N ARG C 10 SHEET 3 F 6 VAL C 53 ALA C 57 1 O LEU C 54 N ILE C 18 SHEET 4 F 6 ILE C 104 VAL C 108 1 O ILE C 105 N LEU C 55 SHEET 5 F 6 VAL C 125 ASN C 129 1 O TRP C 127 N VAL C 106 SHEET 6 F 6 GLN C 185 PHE C 187 1 O PHE C 187 N ALA C 128 SHEET 1 G 3 ALA C 112 ILE C 113 0 SHEET 2 G 3 TRP C 133 GLN C 135 1 O GLN C 135 N ALA C 112 SHEET 3 G 3 LEU C 172 THR C 173 -1 O LEU C 172 N PHE C 134 CRYST1 76.207 132.739 100.361 90.00 102.92 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013122 0.000000 0.003010 0.00000 SCALE2 0.000000 0.007534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010223 0.00000