PDB Short entry for 2H03 HEADER HYDROLASE 13-MAY-06 2H03 TITLE STRUCTURAL STUDIES OF PROTEIN TYROSINE PHOSPHATASE BETA CATALYTIC TITLE 2 DOMAIN IN COMPLEX WITH INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TYROSINE PHOSPHATASE, RECEPTOR TYPE, B,; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, 1676-1970; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST-HISMBP KEYWDS PROTEIN TYROSINE PHOSPHATASE, WPD-LOOP, SULFAMIC ACID, PHOSPHATASE, KEYWDS 2 INHIBITOR, DRUG DESIGN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.G.EVDOKIMOV,M.E.POKROSS,R.L.WALTER,M.MEKEL,J.L.GRAY,K.G.PETERS, AUTHOR 2 M.B.MAIER,K.D.AMARASINGHE,C.M.CLARK,R.NICHOLS REVDAT 8 30-AUG-23 2H03 1 REMARK REVDAT 7 20-OCT-21 2H03 1 REMARK SEQADV LINK REVDAT 6 18-OCT-17 2H03 1 REMARK REVDAT 5 13-JUL-11 2H03 1 VERSN REVDAT 4 24-FEB-09 2H03 1 VERSN REVDAT 3 12-SEP-06 2H03 1 JRNL REVDAT 2 08-AUG-06 2H03 1 JRNL REVDAT 1 13-JUN-06 2H03 0 JRNL AUTH K.K.AMARASINGHE,A.G.EVDOKIMOV,K.XU,C.M.CLARK,M.B.MAIER, JRNL AUTH 2 A.SRIVASTAVA,A.O.COLSON,G.S.GERWE,G.E.STAKE,B.W.HOWARD, JRNL AUTH 3 M.E.POKROSS,J.L.GRAY,K.G.PETERS JRNL TITL DESIGN AND SYNTHESIS OF POTENT, NON-PEPTIDIC INHIBITORS OF JRNL TITL 2 HPTPBETA. JRNL REF BIOORG.MED.CHEM.LETT. V. 16 4252 2006 JRNL REFN ISSN 0960-894X JRNL PMID 16759857 JRNL DOI 10.1016/J.BMCL.2006.05.074 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 32933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1681 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2019 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.79000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.801 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2483 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3378 ; 1.717 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 7.031 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;33.720 ;23.488 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 428 ;13.313 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.480 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 360 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1925 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1097 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1669 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 172 ; 0.226 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.022 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.258 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1489 ; 1.684 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2376 ; 2.591 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1121 ; 4.051 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 995 ; 6.012 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037761. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32934 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 27.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.25400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1RPM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 8000, 220 MM MGCL2, 1% BME, REMARK 280 0.1% BOG, 5MM DTT, PH 8.0, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.15800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.46700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.15800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.46700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 96.43486 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.12470 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 57 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 74 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1675 REMARK 465 ASN A 1676 REMARK 465 ARG A 1677 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 104 O HOH A 222 1.65 REMARK 500 O HOH A 3 O HOH A 204 1.84 REMARK 500 NZ LYS A 1927 O HOH A 204 2.01 REMARK 500 O HOH A 106 O HOH A 221 2.03 REMARK 500 O HOH A 33 O HOH A 204 2.06 REMARK 500 O HOH A 14 O HOH A 205 2.07 REMARK 500 CB CYS A 1951 O HOH A 187 2.09 REMARK 500 O HOH A 14 O HOH A 228 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A1918 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1716 33.64 -90.01 REMARK 500 ASP A1819 -152.55 -129.95 REMARK 500 GLN A1853 79.62 -157.95 REMARK 500 PRO A1895 103.67 -42.60 REMARK 500 CYS A1904 -125.56 -131.55 REMARK 500 VAL A1908 -49.09 -132.34 REMARK 500 VAL A1947 86.16 66.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 1894 PRO A 1895 -146.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 56 O REMARK 620 2 HOH A 56 O 175.2 REMARK 620 3 HOH A 57 O 93.7 90.3 REMARK 620 4 HOH A 57 O 93.7 90.2 0.0 REMARK 620 5 HOH A 74 O 89.7 86.2 175.8 175.8 REMARK 620 6 HOH A 74 O 89.4 86.5 175.7 175.6 0.7 REMARK 620 7 HOH A 76 O 98.7 83.8 92.9 92.9 89.0 89.6 REMARK 620 8 HOH A 76 O 84.6 92.6 90.5 90.5 87.4 86.7 175.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 59 O REMARK 620 2 HOH A 203 O 175.9 REMARK 620 3 HOH A 213 O 80.3 97.5 REMARK 620 4 HOH A 227 O 85.8 90.9 91.9 REMARK 620 5 ASP A1827 OD1 90.3 92.9 84.9 175.3 REMARK 620 6 GLU A1851 OE2 92.1 90.3 171.7 91.0 91.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3UN A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HO2 RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF PROTEIN TYROSINE PHOSPHATASE BETA CATALYTIC REMARK 900 DOMAIN IN COMPLEX WITH INHIBITORS REMARK 900 RELATED ID: 2HO4 RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF PROTEIN TYROSINE PHOSPHATASE BETA CATALYTIC REMARK 900 DOMAIN IN COMPLEX WITH INHIBITORS DBREF 2H03 A 1676 1970 UNP Q3MIV7 Q3MIV7_HUMAN 1676 1970 SEQADV 2H03 SER A 1675 UNP Q3MIV7 CLONING ARTIFACT SEQADV 2H03 A UNP Q3MIV7 ASN 1748 DELETION SEQADV 2H03 A UNP Q3MIV7 VAL 1749 DELETION SEQADV 2H03 A UNP Q3MIV7 ASP 1750 DELETION SEQADV 2H03 A UNP Q3MIV7 ASP 1751 DELETION SEQADV 2H03 A UNP Q3MIV7 ASP 1752 DELETION SEQADV 2H03 GLY A 1748 UNP Q3MIV7 PRO 1753 ENGINEERED MUTATION SEQADV 2H03 GLY A 1749 UNP Q3MIV7 CYS 1754 ENGINEERED MUTATION SEQRES 1 A 291 SER ASN ARG LYS THR SER CYS PRO ILE LYS ILE ASN GLN SEQRES 2 A 291 PHE GLU GLY HIS PHE MET LYS LEU GLN ALA ASP SER ASN SEQRES 3 A 291 TYR LEU LEU SER LYS GLU TYR GLU GLU LEU LYS ASP VAL SEQRES 4 A 291 GLY ARG ASN GLN SER CYS ASP ILE ALA LEU LEU PRO GLU SEQRES 5 A 291 ASN ARG GLY LYS ASN ARG TYR ASN ASN ILE LEU PRO TYR SEQRES 6 A 291 ASP ALA THR ARG VAL LYS LEU SER GLY GLY SER ASP TYR SEQRES 7 A 291 ILE ASN ALA SER TYR ILE PRO GLY ASN ASN PHE ARG ARG SEQRES 8 A 291 GLU TYR ILE VAL THR GLN GLY PRO LEU PRO GLY THR LYS SEQRES 9 A 291 ASP ASP PHE TRP LYS MET VAL TRP GLU GLN ASN VAL HIS SEQRES 10 A 291 ASN ILE VAL MET VAL THR GLN CYS VAL GLU LYS GLY ARG SEQRES 11 A 291 VAL LYS CYS ASP HIS TYR TRP PRO ALA ASP GLN ASP SER SEQRES 12 A 291 LEU TYR TYR GLY ASP LEU ILE LEU GLN MET LEU SER GLU SEQRES 13 A 291 SER VAL LEU PRO GLU TRP THR ILE ARG GLU PHE LYS ILE SEQRES 14 A 291 CYS GLY GLU GLU GLN LEU ASP ALA HIS ARG LEU ILE ARG SEQRES 15 A 291 HIS PHE HIS TYR THR VAL TRP PRO ASP HIS GLY VAL PRO SEQRES 16 A 291 GLU THR THR GLN SER LEU ILE GLN PHE VAL ARG THR VAL SEQRES 17 A 291 ARG ASP TYR ILE ASN ARG SER PRO GLY ALA GLY PRO THR SEQRES 18 A 291 VAL VAL HIS CYS SER ALA GLY VAL GLY ARG THR GLY THR SEQRES 19 A 291 PHE ILE ALA LEU ASP ARG ILE LEU GLN GLN LEU ASP SER SEQRES 20 A 291 LYS ASP SER VAL ASP ILE TYR GLY ALA VAL HIS ASP LEU SEQRES 21 A 291 ARG LEU HIS ARG VAL HIS MET VAL GLN THR GLU CYS GLN SEQRES 22 A 291 TYR VAL TYR LEU HIS GLN CYS VAL ARG ASP VAL LEU ARG SEQRES 23 A 291 ALA ARG LYS LEU ARG HET CL A 302 1 HET MG A 303 1 HET MG A 304 1 HET CL A 305 1 HET 3UN A 401 33 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM 3UN (4-{4-[(TERT-BUTOXYCARBONYL)AMINO]-2,2- HETNAM 2 3UN BIS(ETHOXYCARBONYL)BUTYL}PHENYL)SULFAMIC ACID FORMUL 2 CL 2(CL 1-) FORMUL 3 MG 2(MG 2+) FORMUL 6 3UN C21 H32 N2 O9 S FORMUL 7 HOH *202(H2 O) HELIX 1 1 GLN A 1687 LEU A 1710 1 24 HELIX 2 2 CYS A 1719 LEU A 1724 1 6 HELIX 3 3 PRO A 1725 ASN A 1731 5 7 HELIX 4 4 LEU A 1779 GLY A 1781 5 3 HELIX 5 5 THR A 1782 GLN A 1793 1 12 HELIX 6 6 THR A 1876 ARG A 1893 1 18 HELIX 7 7 VAL A 1908 LYS A 1927 1 20 HELIX 8 8 ASP A 1931 LEU A 1941 1 11 HELIX 9 9 THR A 1949 LEU A 1969 1 21 SHEET 1 A 2 ILE A1683 LYS A1684 0 SHEET 2 A 2 SER A1929 VAL A1930 -1 O VAL A1930 N ILE A1683 SHEET 1 B 9 ARG A1743 LYS A1745 0 SHEET 2 B 9 TYR A1757 ILE A1763 -1 O ALA A1760 N VAL A1744 SHEET 3 B 9 TYR A1772 THR A1775 -1 O TYR A1772 N ILE A1763 SHEET 4 B 9 THR A1900 HIS A1903 1 O VAL A1902 N ILE A1773 SHEET 5 B 9 ASN A1797 MET A1800 1 N VAL A1799 O VAL A1901 SHEET 6 B 9 GLN A1853 TYR A1865 1 O PHE A1863 N ILE A1798 SHEET 7 B 9 TRP A1841 GLY A1850 -1 N ARG A1844 O HIS A1862 SHEET 8 B 9 LEU A1828 VAL A1837 -1 N LEU A1833 O GLU A1845 SHEET 9 B 9 LEU A1823 TYR A1825 -1 N TYR A1825 O LEU A1828 SHEET 1 C 2 VAL A1805 GLU A1806 0 SHEET 2 C 2 ARG A1809 VAL A1810 -1 O ARG A1809 N GLU A1806 LINK O HOH A 56 MG MG A 303 1555 1555 1.97 LINK O HOH A 56 MG MG A 303 2656 1555 2.09 LINK O HOH A 57 MG MG A 303 1555 1555 2.06 LINK O HOH A 57 MG MG A 303 2656 1555 2.06 LINK O HOH A 59 MG MG A 304 1555 1555 2.26 LINK O HOH A 74 MG MG A 303 1555 1555 2.06 LINK O HOH A 74 MG MG A 303 2656 1555 2.06 LINK O HOH A 76 MG MG A 303 1555 1555 2.09 LINK O HOH A 76 MG MG A 303 2656 1555 2.17 LINK O HOH A 203 MG MG A 304 1555 1555 2.06 LINK O HOH A 213 MG MG A 304 1555 1555 2.22 LINK O HOH A 227 MG MG A 304 1555 1555 2.04 LINK MG MG A 304 OD1 ASP A1827 1555 2656 1.99 LINK MG MG A 304 OE2 GLU A1851 1555 2656 2.07 SITE 1 AC1 5 GLY A1765 ASN A1766 ASN A1767 PHE A1768 SITE 2 AC1 5 ARG A1970 SITE 1 AC2 4 HOH A 56 HOH A 57 HOH A 74 HOH A 76 SITE 1 AC3 6 HOH A 59 HOH A 203 HOH A 213 HOH A 227 SITE 2 AC3 6 ASP A1827 GLU A1851 SITE 1 AC4 4 TYR A1762 PRO A1764 ARG A1769 ARG A1770 SITE 1 AC5 18 HOH A 22 ASP A1720 LEU A1723 TYR A1733 SITE 2 AC5 18 ASN A1734 ASN A1735 LYS A1811 ASP A1870 SITE 3 AC5 18 HIS A1871 CYS A1904 SER A1905 ALA A1906 SITE 4 AC5 18 GLY A1907 VAL A1908 GLY A1909 ARG A1910 SITE 5 AC5 18 HIS A1945 GLN A1948 CRYST1 112.316 38.934 66.062 90.00 103.91 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008903 0.000000 0.002205 0.00000 SCALE2 0.000000 0.025684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015595 0.00000