PDB Short entry for 2H25 HEADER SUGAR BINDING PROTEIN 18-MAY-06 2H25 TITLE SOLUTION STRUCTURE OF MALTOSE BINDING PROTEIN COMPLEXED WITH BETA- TITLE 2 CYCLODEXTRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MALTODEXTRIN-BINDING PROTEIN, MMBP, BETA-CYCLODEXTRIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA PROTEIN, SUGAR BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.XU,Z.LIN,Y.ZHENG,D.YANG REVDAT 4 09-MAR-22 2H25 1 REMARK SEQADV REVDAT 3 24-FEB-09 2H25 1 VERSN REVDAT 2 14-NOV-06 2H25 1 JRNL AUTHOR REVDAT 1 31-OCT-06 2H25 0 JRNL AUTH Y.XU,Y.ZHENG,J.S.FAN,D.YANG JRNL TITL A NEW STRATEGY FOR STRUCTURE DETERMINATION OF LARGE PROTEINS JRNL TITL 2 IN SOLUTION WITHOUT DEUTERATION JRNL REF NAT.METHODS V. 3 931 2006 JRNL REFN ISSN 1548-7091 JRNL PMID 17060917 JRNL DOI 10.1038/NMETH938 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON, REMARK 3 WARREN (CNS), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H25 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037834. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 20MM SODIUM PHOSPHATES REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM MBP, PH 7; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D_13C/15N-SEPARATED_NOESY; REMARK 210 4D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 12 31.71 -93.49 REMARK 500 1 ASP A 14 53.83 -178.64 REMARK 500 1 LYS A 15 78.78 -179.75 REMARK 500 1 THR A 31 -44.14 -136.65 REMARK 500 1 PRO A 57 -167.78 -68.09 REMARK 500 1 ASP A 58 -51.90 -123.75 REMARK 500 1 GLU A 78 -165.37 -77.06 REMARK 500 1 THR A 80 77.42 -158.10 REMARK 500 1 VAL A 97 56.24 -104.05 REMARK 500 1 TYR A 99 -64.74 -96.23 REMARK 500 1 ILE A 108 -59.30 -128.31 REMARK 500 1 LYS A 119 33.39 -98.50 REMARK 500 1 PHE A 149 -172.78 -177.25 REMARK 500 1 LEU A 151 30.80 -98.57 REMARK 500 1 GLU A 153 111.42 -168.49 REMARK 500 1 VAL A 183 -60.52 -103.13 REMARK 500 1 GLU A 221 -74.49 -100.30 REMARK 500 1 TRP A 230 39.25 -94.36 REMARK 500 1 ASP A 236 -40.62 -176.26 REMARK 500 1 LYS A 239 74.65 60.06 REMARK 500 1 PRO A 248 -172.20 -54.00 REMARK 500 1 ALA A 269 -82.46 -53.66 REMARK 500 1 SER A 270 65.56 179.58 REMARK 500 1 PRO A 271 -71.44 -76.67 REMARK 500 1 ASN A 272 68.57 174.88 REMARK 500 1 TYR A 283 32.75 -164.39 REMARK 500 1 LEU A 284 -42.30 -168.66 REMARK 500 1 LEU A 285 30.38 -98.16 REMARK 500 1 PRO A 331 175.55 -54.44 REMARK 500 1 THR A 369 43.59 -95.44 REMARK 500 2 ASP A 14 46.45 -93.24 REMARK 500 2 ASP A 55 -81.25 -137.32 REMARK 500 2 PRO A 57 -179.57 -69.59 REMARK 500 2 THR A 80 77.48 -156.54 REMARK 500 2 LYS A 88 39.83 -95.94 REMARK 500 2 VAL A 97 50.82 -100.46 REMARK 500 2 ASN A 100 58.71 -151.48 REMARK 500 2 ILE A 104 30.37 -146.68 REMARK 500 2 LEU A 113 -178.28 -67.71 REMARK 500 2 LEU A 121 -80.15 -88.06 REMARK 500 2 ALA A 146 -68.42 -101.96 REMARK 500 2 GLU A 172 147.32 -170.41 REMARK 500 2 LYS A 175 -166.92 -128.70 REMARK 500 2 LYS A 202 79.22 57.03 REMARK 500 2 HIS A 203 25.44 -149.82 REMARK 500 2 ASP A 207 46.75 -93.89 REMARK 500 2 GLU A 221 -46.89 -150.46 REMARK 500 2 ALA A 231 -44.79 -143.00 REMARK 500 2 PRO A 257 -173.72 -57.94 REMARK 500 2 ASN A 272 46.86 -162.33 REMARK 500 REMARK 500 THIS ENTRY HAS 243 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2H25 A 1 370 UNP P0AEX9 MALE_ECOLI 27 396 SEQADV 2H25 THR A 2 UNP P0AEX9 ILE 28 CONFLICT SEQRES 1 A 370 LYS THR GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN GLY SEQRES 2 A 370 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 3 A 370 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 4 A 370 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 5 A 370 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 6 A 370 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 7 A 370 ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 8 A 370 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 9 A 370 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 10 A 370 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 11 A 370 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 12 A 370 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 13 A 370 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 14 A 370 LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 15 A 370 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 16 A 370 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 17 A 370 ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU SEQRES 18 A 370 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 19 A 370 ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL LEU SEQRES 20 A 370 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 21 A 370 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 22 A 370 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 23 A 370 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 24 A 370 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU ALA SEQRES 25 A 370 LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA GLN SEQRES 26 A 370 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 27 A 370 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 28 A 370 SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP ALA SEQRES 29 A 370 GLN THR ARG ILE THR LYS HELIX 1 1 GLY A 16 THR A 31 1 16 HELIX 2 2 LYS A 42 ALA A 52 1 11 HELIX 3 3 HIS A 64 GLY A 74 1 11 HELIX 4 4 ASP A 82 LEU A 89 1 8 HELIX 5 5 TYR A 90 VAL A 97 1 8 HELIX 6 6 GLU A 130 GLY A 143 1 14 HELIX 7 7 GLU A 153 PHE A 156 5 4 HELIX 8 8 THR A 157 GLY A 166 1 10 HELIX 9 9 GLY A 187 ASN A 201 1 15 HELIX 10 10 ASP A 209 GLY A 220 1 12 HELIX 11 11 ASN A 272 ASN A 282 1 11 HELIX 12 12 THR A 286 LYS A 297 1 12 HELIX 13 13 LEU A 304 LYS A 313 1 10 HELIX 14 14 ASP A 314 GLY A 327 1 14 HELIX 15 15 PRO A 334 SER A 352 1 19 HELIX 16 16 THR A 356 THR A 369 1 14 SHEET 1 A 2 LYS A 6 TRP A 10 0 SHEET 2 A 2 LYS A 34 GLU A 38 1 O THR A 36 N ILE A 9 SHEET 1 B 4 ILE A 59 ALA A 63 0 SHEET 2 B 4 GLY A 260 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 3 B 4 TYR A 106 GLU A 111 -1 N ALA A 109 O LEU A 262 SHEET 4 B 4 ALA A 301 VAL A 302 -1 O ALA A 301 N VAL A 110 SHEET 1 C 4 LEU A 147 MET A 148 0 SHEET 2 C 4 MET A 224 ASN A 227 1 O ILE A 226 N MET A 148 SHEET 3 C 4 SER A 114 ASN A 118 -1 N ILE A 116 O THR A 225 SHEET 4 C 4 TYR A 242 THR A 245 -1 O THR A 245 N LEU A 115 SHEET 1 D 2 LYS A 170 GLU A 172 0 SHEET 2 D 2 LYS A 175 ASP A 177 -1 O ASP A 177 N LYS A 170 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000