PDB Short entry for 2H4U HEADER HYDROLASE 25-MAY-06 2H4U TITLE CRYSTAL STRUCTURE OF HUMAN THIOESTERASE SUPERFAMILY MEMBER 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOESTERASE SUPERFAMILY MEMBER 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 19-140; COMPND 5 EC: 3.1.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS THIOESTERASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.OGG,J.UPPENBERG,C.ARROWSMITH,H.BERGLUND,A.EDWARDS,M.EHN, AUTHOR 2 S.GRASSLUND,S.FLODIN,M.HAMMERSTROM,M.HOGBOM,L.HOLMBERG-SCHIAVONE, AUTHOR 3 T.KOTENYOVA,P.NILSSON-EHLE,P.NORDLUND,T.NYMAN,C.PERSSON,J.SAGEMARK, AUTHOR 4 M.SUNDSTROM,A.-G.THORSELL,J.WEIGELT,M.HALLBERG,STRUCTURAL GENOMICS AUTHOR 5 CONSORTIUM (SGC) REVDAT 3 30-AUG-23 2H4U 1 TITLE SEQADV REVDAT 2 24-FEB-09 2H4U 1 VERSN REVDAT 1 20-JUN-06 2H4U 0 JRNL AUTH D.J.OGG,J.UPPENBERG,C.ARROWSMITH,H.BERGLUND,A.EDWARDS,M.EHN, JRNL AUTH 2 S.GRASSLUND,S.FLODIN,M.HAMMERSTROM,M.HOGBOM, JRNL AUTH 3 L.HOLMBERG-SCHIAVONE,T.KOTENYOVA,P.NILSSON-EHLE,P.NORDLUND, JRNL AUTH 4 T.NYMAN,C.PERSSON,J.SAGEMARK,M.SUNDSTROM,A.-G.THORSELL, JRNL AUTH 5 J.WEIGELT,M.HALLBERG JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN THIOESTERASE SUPERFAMILY JRNL TITL 2 MEMBER 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 29216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1538 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2100 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3662 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.259 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.062 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3708 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5012 ; 1.591 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 489 ; 6.489 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;44.820 ;24.720 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 686 ;18.149 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.952 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2623 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1753 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2494 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 264 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.226 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.300 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2486 ; 0.742 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3917 ; 1.141 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1307 ; 1.777 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1095 ; 2.867 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 20 A 139 6 REMARK 3 1 B 20 B 139 6 REMARK 3 1 C 20 C 139 6 REMARK 3 1 D 20 D 139 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 886 ; 0.42 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 886 ; 0.37 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 886 ; 0.43 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 886 ; 0.50 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 886 ; 2.50 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 886 ; 2.45 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 886 ; 3.10 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 886 ; 2.54 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30821 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1WN3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 3350, 0.2M NA/K PHOSPHATE, PH REMARK 280 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.52500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.52500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 VAL A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 THR A 10 REMARK 465 GLU A 11 REMARK 465 ASN A 12 REMARK 465 LEU A 13 REMARK 465 TYR A 14 REMARK 465 PHE A 15 REMARK 465 GLN A 16 REMARK 465 SER A 17 REMARK 465 MET A 18 REMARK 465 ASN A 140 REMARK 465 MET B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 GLY B 5 REMARK 465 VAL B 6 REMARK 465 ASP B 7 REMARK 465 LEU B 8 REMARK 465 GLY B 9 REMARK 465 THR B 10 REMARK 465 GLU B 11 REMARK 465 ASN B 12 REMARK 465 LEU B 13 REMARK 465 TYR B 14 REMARK 465 PHE B 15 REMARK 465 GLN B 16 REMARK 465 SER B 17 REMARK 465 MET B 18 REMARK 465 ASN B 140 REMARK 465 MET C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 HIS C 1 REMARK 465 HIS C 2 REMARK 465 SER C 3 REMARK 465 SER C 4 REMARK 465 GLY C 5 REMARK 465 VAL C 6 REMARK 465 ASP C 7 REMARK 465 LEU C 8 REMARK 465 GLY C 9 REMARK 465 THR C 10 REMARK 465 GLU C 11 REMARK 465 ASN C 12 REMARK 465 LEU C 13 REMARK 465 TYR C 14 REMARK 465 PHE C 15 REMARK 465 GLN C 16 REMARK 465 SER C 17 REMARK 465 MET C 18 REMARK 465 ASN C 140 REMARK 465 MET D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 HIS D 1 REMARK 465 HIS D 2 REMARK 465 SER D 3 REMARK 465 SER D 4 REMARK 465 GLY D 5 REMARK 465 VAL D 6 REMARK 465 ASP D 7 REMARK 465 LEU D 8 REMARK 465 GLY D 9 REMARK 465 ASN D 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ARG B 19 O HOH B 184 2.00 REMARK 500 O SER A 92 O HOH A 182 2.12 REMARK 500 O ALA D 79 O HOH D 199 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 141 O HOH B 187 3554 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 133 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 74 -5.01 -52.10 REMARK 500 ARG A 77 89.46 -69.76 REMARK 500 CYS B 74 52.93 -102.09 REMARK 500 GLU C 22 -6.46 -58.28 REMARK 500 CYS C 74 28.03 -76.95 REMARK 500 VAL D 84 -52.26 -122.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 2H4U A 19 140 UNP Q9NPJ3 THEM2_HUMAN 19 140 DBREF 2H4U B 19 140 UNP Q9NPJ3 THEM2_HUMAN 19 140 DBREF 2H4U C 19 140 UNP Q9NPJ3 THEM2_HUMAN 19 140 DBREF 2H4U D 19 140 UNP Q9NPJ3 THEM2_HUMAN 19 140 SEQADV 2H4U MET A -4 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS A -3 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS A -2 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS A -1 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS A 0 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS A 1 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS A 2 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U SER A 3 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U SER A 4 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLY A 5 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U VAL A 6 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U ASP A 7 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U LEU A 8 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLY A 9 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U THR A 10 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLU A 11 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U ASN A 12 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U LEU A 13 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U TYR A 14 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U PHE A 15 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLN A 16 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U SER A 17 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U MET A 18 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U MET B -4 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS B -3 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS B -2 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS B -1 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS B 0 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS B 1 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS B 2 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U SER B 3 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U SER B 4 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLY B 5 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U VAL B 6 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U ASP B 7 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U LEU B 8 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLY B 9 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U THR B 10 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLU B 11 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U ASN B 12 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U LEU B 13 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U TYR B 14 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U PHE B 15 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLN B 16 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U SER B 17 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U MET B 18 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U MET C -4 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS C -3 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS C -2 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS C -1 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS C 0 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS C 1 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS C 2 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U SER C 3 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U SER C 4 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLY C 5 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U VAL C 6 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U ASP C 7 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U LEU C 8 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLY C 9 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U THR C 10 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLU C 11 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U ASN C 12 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U LEU C 13 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U TYR C 14 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U PHE C 15 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLN C 16 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U SER C 17 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U MET C 18 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U MET D -4 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS D -3 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS D -2 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS D -1 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS D 0 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS D 1 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U HIS D 2 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U SER D 3 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U SER D 4 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLY D 5 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U VAL D 6 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U ASP D 7 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U LEU D 8 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLY D 9 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U THR D 10 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLU D 11 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U ASN D 12 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U LEU D 13 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U TYR D 14 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U PHE D 15 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U GLN D 16 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U SER D 17 UNP Q9NPJ3 CLONING ARTIFACT SEQADV 2H4U MET D 18 UNP Q9NPJ3 CLONING ARTIFACT SEQRES 1 A 145 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 145 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG ASN PHE SEQRES 3 A 145 GLU ARG VAL LEU GLY LYS ILE THR LEU VAL SER ALA ALA SEQRES 4 A 145 PRO GLY LYS VAL ILE CYS GLU MET LYS VAL GLU GLU GLU SEQRES 5 A 145 HIS THR ASN ALA ILE GLY THR LEU HIS GLY GLY LEU THR SEQRES 6 A 145 ALA THR LEU VAL ASP ASN ILE SER THR MET ALA LEU LEU SEQRES 7 A 145 CYS THR GLU ARG GLY ALA PRO GLY VAL SER VAL ASP MET SEQRES 8 A 145 ASN ILE THR TYR MET SER PRO ALA LYS LEU GLY GLU ASP SEQRES 9 A 145 ILE VAL ILE THR ALA HIS VAL LEU LYS GLN GLY LYS THR SEQRES 10 A 145 LEU ALA PHE THR SER VAL ASP LEU THR ASN LYS ALA THR SEQRES 11 A 145 GLY LYS LEU ILE ALA GLN GLY ARG HIS THR LYS HIS LEU SEQRES 12 A 145 GLY ASN SEQRES 1 B 145 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 145 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG ASN PHE SEQRES 3 B 145 GLU ARG VAL LEU GLY LYS ILE THR LEU VAL SER ALA ALA SEQRES 4 B 145 PRO GLY LYS VAL ILE CYS GLU MET LYS VAL GLU GLU GLU SEQRES 5 B 145 HIS THR ASN ALA ILE GLY THR LEU HIS GLY GLY LEU THR SEQRES 6 B 145 ALA THR LEU VAL ASP ASN ILE SER THR MET ALA LEU LEU SEQRES 7 B 145 CYS THR GLU ARG GLY ALA PRO GLY VAL SER VAL ASP MET SEQRES 8 B 145 ASN ILE THR TYR MET SER PRO ALA LYS LEU GLY GLU ASP SEQRES 9 B 145 ILE VAL ILE THR ALA HIS VAL LEU LYS GLN GLY LYS THR SEQRES 10 B 145 LEU ALA PHE THR SER VAL ASP LEU THR ASN LYS ALA THR SEQRES 11 B 145 GLY LYS LEU ILE ALA GLN GLY ARG HIS THR LYS HIS LEU SEQRES 12 B 145 GLY ASN SEQRES 1 C 145 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 C 145 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG ASN PHE SEQRES 3 C 145 GLU ARG VAL LEU GLY LYS ILE THR LEU VAL SER ALA ALA SEQRES 4 C 145 PRO GLY LYS VAL ILE CYS GLU MET LYS VAL GLU GLU GLU SEQRES 5 C 145 HIS THR ASN ALA ILE GLY THR LEU HIS GLY GLY LEU THR SEQRES 6 C 145 ALA THR LEU VAL ASP ASN ILE SER THR MET ALA LEU LEU SEQRES 7 C 145 CYS THR GLU ARG GLY ALA PRO GLY VAL SER VAL ASP MET SEQRES 8 C 145 ASN ILE THR TYR MET SER PRO ALA LYS LEU GLY GLU ASP SEQRES 9 C 145 ILE VAL ILE THR ALA HIS VAL LEU LYS GLN GLY LYS THR SEQRES 10 C 145 LEU ALA PHE THR SER VAL ASP LEU THR ASN LYS ALA THR SEQRES 11 C 145 GLY LYS LEU ILE ALA GLN GLY ARG HIS THR LYS HIS LEU SEQRES 12 C 145 GLY ASN SEQRES 1 D 145 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 D 145 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG ASN PHE SEQRES 3 D 145 GLU ARG VAL LEU GLY LYS ILE THR LEU VAL SER ALA ALA SEQRES 4 D 145 PRO GLY LYS VAL ILE CYS GLU MET LYS VAL GLU GLU GLU SEQRES 5 D 145 HIS THR ASN ALA ILE GLY THR LEU HIS GLY GLY LEU THR SEQRES 6 D 145 ALA THR LEU VAL ASP ASN ILE SER THR MET ALA LEU LEU SEQRES 7 D 145 CYS THR GLU ARG GLY ALA PRO GLY VAL SER VAL ASP MET SEQRES 8 D 145 ASN ILE THR TYR MET SER PRO ALA LYS LEU GLY GLU ASP SEQRES 9 D 145 ILE VAL ILE THR ALA HIS VAL LEU LYS GLN GLY LYS THR SEQRES 10 D 145 LEU ALA PHE THR SER VAL ASP LEU THR ASN LYS ALA THR SEQRES 11 D 145 GLY LYS LEU ILE ALA GLN GLY ARG HIS THR LYS HIS LEU SEQRES 12 D 145 GLY ASN FORMUL 5 HOH *211(H2 O) HELIX 1 1 ASN A 20 GLY A 26 5 7 HELIX 2 2 GLU A 45 THR A 49 5 5 HELIX 3 3 HIS A 56 CYS A 74 1 19 HELIX 4 4 ASN B 20 GLY B 26 5 7 HELIX 5 5 GLU B 45 THR B 49 5 5 HELIX 6 6 HIS B 56 CYS B 74 1 19 HELIX 7 7 ASN C 20 GLY C 26 5 7 HELIX 8 8 GLU C 45 THR C 49 5 5 HELIX 9 9 HIS C 56 CYS C 74 1 19 HELIX 10 10 GLN D 16 MET D 18 5 3 HELIX 11 11 ASN D 20 LEU D 25 5 6 HELIX 12 12 GLU D 45 THR D 49 5 5 HELIX 13 13 HIS D 56 CYS D 74 1 19 SHEET 1 A12 THR A 29 ALA A 34 0 SHEET 2 A12 LYS A 37 LYS A 43 -1 O ILE A 39 N SER A 32 SHEET 3 A12 ASP A 99 GLN A 109 -1 O ILE A 100 N MET A 42 SHEET 4 A12 LEU A 113 ASN A 122 -1 O SER A 117 N HIS A 105 SHEET 5 A12 LEU A 128 HIS A 137 -1 O GLY A 132 N VAL A 118 SHEET 6 A12 VAL A 82 TYR A 90 -1 N VAL A 82 O HIS A 137 SHEET 7 A12 VAL B 82 TYR B 90 -1 O TYR B 90 N VAL A 84 SHEET 8 A12 LEU B 128 HIS B 137 -1 O THR B 135 N ASP B 85 SHEET 9 A12 LEU B 113 ASN B 122 -1 N LEU B 120 O ILE B 129 SHEET 10 A12 ASP B 99 GLN B 109 -1 N LYS B 108 O PHE B 115 SHEET 11 A12 LYS B 37 LYS B 43 -1 N MET B 42 O ILE B 100 SHEET 12 A12 THR B 29 ALA B 34 -1 N THR B 29 O GLU B 41 SHEET 1 B13 THR C 29 ALA C 34 0 SHEET 2 B13 LYS C 37 LYS C 43 -1 O ILE C 39 N SER C 32 SHEET 3 B13 ASP C 99 GLN C 109 -1 O ILE C 102 N CYS C 40 SHEET 4 B13 LEU C 113 ASN C 122 -1 O SER C 117 N HIS C 105 SHEET 5 B13 LEU C 128 HIS C 137 -1 O ILE C 129 N LEU C 120 SHEET 6 B13 VAL C 82 TYR C 90 -1 N VAL C 82 O HIS C 137 SHEET 7 B13 VAL D 82 TYR D 90 -1 O VAL D 84 N TYR C 90 SHEET 8 B13 LEU D 128 HIS D 137 -1 O THR D 135 N ASP D 85 SHEET 9 B13 LEU D 113 ASN D 122 -1 N LEU D 120 O ILE D 129 SHEET 10 B13 ASP D 99 GLN D 109 -1 N THR D 103 O ASP D 119 SHEET 11 B13 LYS D 37 LYS D 43 -1 N CYS D 40 O ILE D 102 SHEET 12 B13 LYS D 27 ALA D 34 -1 N ALA D 34 O LYS D 37 SHEET 13 B13 GLU D 11 TYR D 14 -1 N GLU D 11 O LEU D 30 CRYST1 57.050 90.970 114.400 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017528 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008741 0.00000