PDB Short entry for 2H8W HEADER RNA BINDING PROTEIN 08-JUN-06 2H8W TITLE SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN L11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L11; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: RPLK, RPL11; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS L11, ANTIBIOTICS, RIBOSOME, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.LEE,J.D.WALSH,P.YU,T.CHOLI-PAPADOPOULOU,S.KRUEGER,D.DRAPER,Y.- AUTHOR 2 X.WANG REVDAT 4 09-MAR-22 2H8W 1 REMARK REVDAT 3 24-FEB-09 2H8W 1 VERSN REVDAT 2 03-APR-07 2H8W 1 JRNL REVDAT 1 06-FEB-07 2H8W 0 JRNL AUTH D.LEE,J.D.WALSH,P.YU,M.A.MARKUS,T.CHOLI-PAPADOPOULOU, JRNL AUTH 2 C.D.SCHWIETERS,S.KRUEGER,D.E.DRAPER,Y.-X.WANG JRNL TITL THE STRUCTURE OF FREE L11 AND FUNCTIONAL DYNAMICS OF L11 IN JRNL TITL 2 FREE, L11-RRNA(58 NT) BINARY AND L11-RRNA(58 JRNL TITL 3 NT)-THIOSTREPTON TERNARY COMPLEXES. JRNL REF J.MOL.BIOL. V. 367 1007 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17292917 JRNL DOI 10.1016/J.JMB.2007.01.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1.4 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H8W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038076. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 MM KPI, 70 MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 MM KPI, 70 MM KCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1.4 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SUPERIMPOSED IN N-TERMINAL DOMAIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 86.03 57.46 REMARK 500 1 LYS A 16 20.85 -153.09 REMARK 500 1 HIS A 30 -65.72 -128.84 REMARK 500 1 MET A 48 -74.72 -149.94 REMARK 500 1 ASP A 50 93.96 56.96 REMARK 500 1 ILE A 57 92.07 -63.95 REMARK 500 1 TYR A 60 -175.31 -58.01 REMARK 500 1 ASP A 62 40.71 -179.25 REMARK 500 1 PHE A 67 135.35 -179.74 REMARK 500 1 ALA A 81 -70.75 -49.60 REMARK 500 1 ARG A 93 -66.95 -94.81 REMARK 500 1 GLU A 94 67.69 -162.02 REMARK 500 1 ARG A 98 129.32 74.34 REMARK 500 1 LYS A 111 42.12 -92.15 REMARK 500 1 SER A 130 -65.81 -93.20 REMARK 500 1 ALA A 141 73.55 -115.00 REMARK 500 1 PRO A 142 -172.96 -69.74 REMARK 500 1 GLU A 143 99.60 -57.64 REMARK 500 1 VAL A 144 -179.63 -58.35 REMARK 500 2 LYS A 2 102.02 -56.91 REMARK 500 2 LYS A 16 81.25 69.55 REMARK 500 2 HIS A 30 -65.22 -106.34 REMARK 500 2 ASP A 50 65.98 -175.41 REMARK 500 2 ILE A 57 92.86 -63.32 REMARK 500 2 ALA A 61 -76.28 -80.29 REMARK 500 2 SER A 64 -169.72 75.18 REMARK 500 2 PRO A 73 76.24 -69.74 REMARK 500 2 ALA A 74 -63.93 -120.29 REMARK 500 2 LYS A 86 93.16 56.09 REMARK 500 2 ALA A 88 -175.64 61.82 REMARK 500 2 HIS A 89 -165.25 44.74 REMARK 500 2 PRO A 91 98.96 -69.71 REMARK 500 2 ARG A 93 53.00 -171.01 REMARK 500 2 GLU A 94 109.35 -160.05 REMARK 500 2 LYS A 111 44.02 -90.53 REMARK 500 2 ALA A 141 160.38 62.89 REMARK 500 2 PRO A 142 -175.48 -69.72 REMARK 500 2 GLU A 143 80.80 -159.45 REMARK 500 2 VAL A 144 85.85 50.84 REMARK 500 2 ASP A 146 96.01 58.53 REMARK 500 3 LYS A 2 96.12 -66.13 REMARK 500 3 LYS A 16 83.26 179.34 REMARK 500 3 ASN A 33 109.78 60.98 REMARK 500 3 ALA A 44 -60.50 -106.96 REMARK 500 3 ASN A 47 49.17 -89.37 REMARK 500 3 MET A 48 -63.94 -138.12 REMARK 500 3 GLU A 56 67.19 -112.79 REMARK 500 3 ILE A 57 101.05 -54.48 REMARK 500 3 TYR A 60 -173.23 -59.12 REMARK 500 3 ALA A 61 -76.13 -52.19 REMARK 500 REMARK 500 THIS ENTRY HAS 402 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2H8W A 1 147 UNP P36238 RL11_THETH 1 147 SEQRES 1 A 147 MET LYS LYS VAL VAL ALA VAL VAL LYS LEU GLN LEU PRO SEQRES 2 A 147 ALA GLY LYS ALA THR PRO ALA PRO PRO VAL GLY PRO ALA SEQRES 3 A 147 LEU GLY GLN HIS GLY ALA ASN ILE MET GLU PHE VAL LYS SEQRES 4 A 147 ALA PHE ASN ALA ALA THR ALA ASN MET GLY ASP ALA ILE SEQRES 5 A 147 VAL PRO VAL GLU ILE THR ILE TYR ALA ASP ARG SER PHE SEQRES 6 A 147 THR PHE VAL THR LYS THR PRO PRO ALA SER TYR LEU ILE SEQRES 7 A 147 ARG LYS ALA ALA GLY LEU GLU LYS GLY ALA HIS LYS PRO SEQRES 8 A 147 GLY ARG GLU LYS VAL GLY ARG ILE THR TRP GLU GLN VAL SEQRES 9 A 147 LEU GLU ILE ALA LYS GLN LYS MET PRO ASP LEU ASN THR SEQRES 10 A 147 THR ASP LEU GLU ALA ALA ALA ARG MET ILE ALA GLY SER SEQRES 11 A 147 ALA ARG SER MET GLY VAL GLU VAL VAL GLY ALA PRO GLU SEQRES 12 A 147 VAL LYS ASP ALA HELIX 1 1 VAL A 23 GLY A 28 1 6 HELIX 2 2 ILE A 34 ALA A 43 1 10 HELIX 3 3 ALA A 74 GLY A 83 1 10 HELIX 4 4 THR A 100 LYS A 109 1 10 HELIX 5 5 ASP A 119 ARG A 125 1 7 HELIX 6 6 SER A 130 MET A 134 5 5 SHEET 1 A 2 ALA A 6 VAL A 7 0 SHEET 2 A 2 THR A 58 ILE A 59 -1 O ILE A 59 N ALA A 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000