PDB Short entry for 2HEI HEADER TRANSPORT PROTEIN 21-JUN-06 2HEI TITLE CRYSTAL STRUCTURE OF HUMAN RAB5B IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-5B; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAB5B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE-3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P28A-LIC KEYWDS G-PROTEIN, RAB, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.HONG,L.SHEN,J.WANG,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 30-AUG-23 2HEI 1 REMARK SEQADV REVDAT 3 18-OCT-17 2HEI 1 REMARK REVDAT 2 24-FEB-09 2HEI 1 VERSN REVDAT 1 04-JUL-06 2HEI 0 JRNL AUTH B.HONG,L.SHEN,J.WANG,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF HUMAN RAB5B IN COMPLEX WITH GDP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 45443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.327 REMARK 3 FREE R VALUE TEST SET COUNT : 2875 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3331 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2559 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37500 REMARK 3 B22 (A**2) : 0.51700 REMARK 3 B33 (A**2) : -0.14300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.000 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2690 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1770 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3649 ; 1.488 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4336 ; 1.139 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 6.085 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;34.633 ;24.821 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 463 ;12.151 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.429 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2910 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 536 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 498 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1876 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1282 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1307 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 128 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 62 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.106 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1809 ; 2.432 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 664 ; 0.687 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2615 ; 2.907 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1205 ; 2.466 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1032 ; 3.232 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HEI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50161 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.67900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1N6I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% P3350, 0.1M NAOAC, PH 4.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.65100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.75050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.18500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.75050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.65100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.18500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). ACCORDING TO AUTHORS, THE REMARK 300 BIOLOGICAL UNIT OF THE PROTEIN IS NOT KNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 ALA A 15 REMARK 465 SER A 16 REMARK 465 LYS A 17 REMARK 465 ASP A 65 REMARK 465 ASP A 66 REMARK 465 THR A 67 REMARK 465 SER A 184 REMARK 465 GLU A 185 REMARK 465 PRO A 186 REMARK 465 GLN A 187 REMARK 465 ASN A 188 REMARK 465 LEU A 189 REMARK 465 GLY A 190 REMARK 465 GLY A 191 REMARK 465 GLY B 13 REMARK 465 SER B 14 REMARK 465 ALA B 15 REMARK 465 SER B 16 REMARK 465 ASP B 65 REMARK 465 ASP B 66 REMARK 465 SER B 184 REMARK 465 GLU B 185 REMARK 465 PRO B 186 REMARK 465 GLN B 187 REMARK 465 ASN B 188 REMARK 465 LEU B 189 REMARK 465 GLY B 190 REMARK 465 GLY B 191 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 91 CZ NH1 NH2 REMARK 470 GLN A 105 CD OE1 NE2 REMARK 470 LYS A 180 CE NZ REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 GLN B 105 CD OE1 NE2 REMARK 470 ARG B 120 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 30 7.58 83.25 REMARK 500 ALA A 167 -3.83 82.36 REMARK 500 ALA B 30 8.90 80.00 REMARK 500 LEU B 137 47.99 -98.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D1D A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D1D B 302 DBREF 2HEI A 15 191 UNP P61020 RAB5B_HUMAN 15 191 DBREF 2HEI B 15 191 UNP P61020 RAB5B_HUMAN 15 191 SEQADV 2HEI GLY A 13 UNP P61020 CLONING ARTIFACT SEQADV 2HEI SER A 14 UNP P61020 CLONING ARTIFACT SEQADV 2HEI GLY B 13 UNP P61020 CLONING ARTIFACT SEQADV 2HEI SER B 14 UNP P61020 CLONING ARTIFACT SEQRES 1 A 179 GLY SER ALA SER LYS ILE CYS GLN PHE LYS LEU VAL LEU SEQRES 2 A 179 LEU GLY GLU SER ALA VAL GLY LYS SER SER LEU VAL LEU SEQRES 3 A 179 ARG PHE VAL LYS GLY GLN PHE HIS GLU TYR GLN GLU SER SEQRES 4 A 179 THR ILE GLY ALA ALA PHE LEU THR GLN SER VAL CYS LEU SEQRES 5 A 179 ASP ASP THR THR VAL LYS PHE GLU ILE TRP ASP THR ALA SEQRES 6 A 179 GLY GLN GLU ARG TYR HIS SER LEU ALA PRO MET TYR TYR SEQRES 7 A 179 ARG GLY ALA GLN ALA ALA ILE VAL VAL TYR ASP ILE THR SEQRES 8 A 179 ASN GLN GLU THR PHE ALA ARG ALA LYS THR TRP VAL LYS SEQRES 9 A 179 GLU LEU GLN ARG GLN ALA SER PRO SER ILE VAL ILE ALA SEQRES 10 A 179 LEU ALA GLY ASN LYS ALA ASP LEU ALA ASN LYS ARG MET SEQRES 11 A 179 VAL GLU TYR GLU GLU ALA GLN ALA TYR ALA ASP ASP ASN SEQRES 12 A 179 SER LEU LEU PHE MET GLU THR SER ALA LYS THR ALA MET SEQRES 13 A 179 ASN VAL ASN ASP LEU PHE LEU ALA ILE ALA LYS LYS LEU SEQRES 14 A 179 PRO LYS SER GLU PRO GLN ASN LEU GLY GLY SEQRES 1 B 179 GLY SER ALA SER LYS ILE CYS GLN PHE LYS LEU VAL LEU SEQRES 2 B 179 LEU GLY GLU SER ALA VAL GLY LYS SER SER LEU VAL LEU SEQRES 3 B 179 ARG PHE VAL LYS GLY GLN PHE HIS GLU TYR GLN GLU SER SEQRES 4 B 179 THR ILE GLY ALA ALA PHE LEU THR GLN SER VAL CYS LEU SEQRES 5 B 179 ASP ASP THR THR VAL LYS PHE GLU ILE TRP ASP THR ALA SEQRES 6 B 179 GLY GLN GLU ARG TYR HIS SER LEU ALA PRO MET TYR TYR SEQRES 7 B 179 ARG GLY ALA GLN ALA ALA ILE VAL VAL TYR ASP ILE THR SEQRES 8 B 179 ASN GLN GLU THR PHE ALA ARG ALA LYS THR TRP VAL LYS SEQRES 9 B 179 GLU LEU GLN ARG GLN ALA SER PRO SER ILE VAL ILE ALA SEQRES 10 B 179 LEU ALA GLY ASN LYS ALA ASP LEU ALA ASN LYS ARG MET SEQRES 11 B 179 VAL GLU TYR GLU GLU ALA GLN ALA TYR ALA ASP ASP ASN SEQRES 12 B 179 SER LEU LEU PHE MET GLU THR SER ALA LYS THR ALA MET SEQRES 13 B 179 ASN VAL ASN ASP LEU PHE LEU ALA ILE ALA LYS LYS LEU SEQRES 14 B 179 PRO LYS SER GLU PRO GLN ASN LEU GLY GLY HET GDP A 201 28 HET D1D A 202 8 HET GDP B 301 28 HET D1D B 302 8 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM D1D (4S,5S)-1,2-DITHIANE-4,5-DIOL FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 D1D 2(C4 H8 O2 S2) FORMUL 7 HOH *124(H2 O) HELIX 1 1 GLY A 32 GLY A 43 1 12 HELIX 2 2 TYR A 82 SER A 84 5 3 HELIX 3 3 LEU A 85 ARG A 91 1 7 HELIX 4 4 ASN A 104 ALA A 122 1 19 HELIX 5 5 LYS A 134 ARG A 141 5 8 HELIX 6 6 GLU A 144 ASN A 155 1 12 HELIX 7 7 ASN A 169 LEU A 181 1 13 HELIX 8 8 GLY B 32 GLY B 43 1 12 HELIX 9 9 TYR B 82 SER B 84 5 3 HELIX 10 10 LEU B 85 ARG B 91 1 7 HELIX 11 11 ASN B 104 ALA B 122 1 19 HELIX 12 12 LYS B 134 ARG B 141 5 8 HELIX 13 13 GLU B 144 ASN B 155 1 12 HELIX 14 14 ASN B 169 LEU B 181 1 13 SHEET 1 A 6 LEU A 58 VAL A 62 0 SHEET 2 A 6 VAL A 69 TRP A 74 -1 O ILE A 73 N LEU A 58 SHEET 3 A 6 CYS A 19 LEU A 26 1 N CYS A 19 O LYS A 70 SHEET 4 A 6 ALA A 95 ASP A 101 1 O ILE A 97 N LEU A 26 SHEET 5 A 6 VAL A 127 ASN A 133 1 O ALA A 129 N VAL A 98 SHEET 6 A 6 LEU A 158 GLU A 161 1 O LEU A 158 N LEU A 130 SHEET 1 B 6 LEU B 58 VAL B 62 0 SHEET 2 B 6 THR B 68 ASP B 75 -1 O VAL B 69 N VAL B 62 SHEET 3 B 6 ILE B 18 LEU B 26 1 N PHE B 21 O LYS B 70 SHEET 4 B 6 ALA B 95 ASP B 101 1 O VAL B 99 N LEU B 26 SHEET 5 B 6 VAL B 127 ASN B 133 1 O ASN B 133 N TYR B 100 SHEET 6 B 6 LEU B 158 GLU B 161 1 O LEU B 158 N LEU B 130 SITE 1 AC1 22 ALA A 30 VAL A 31 GLY A 32 LYS A 33 SITE 2 AC1 22 SER A 34 SER A 35 PHE A 45 GLU A 47 SITE 3 AC1 22 TYR A 48 SER A 51 ALA A 77 ASN A 133 SITE 4 AC1 22 LYS A 134 ASP A 136 LEU A 137 SER A 163 SITE 5 AC1 22 ALA A 164 LYS A 165 HOH A 221 HOH A 223 SITE 6 AC1 22 HOH A 244 HOH A 266 SITE 1 AC2 9 THR A 76 GLN A 79 GLU A 80 HIS A 83 SITE 2 AC2 9 ALA A 86 TYR A 89 TYR A 90 TRP A 114 SITE 3 AC2 9 GLU A 117 SITE 1 AC3 23 ALA B 30 VAL B 31 GLY B 32 LYS B 33 SITE 2 AC3 23 SER B 34 SER B 35 PHE B 45 GLU B 47 SITE 3 AC3 23 TYR B 48 SER B 51 ALA B 77 ASN B 133 SITE 4 AC3 23 LYS B 134 ASP B 136 LEU B 137 SER B 163 SITE 5 AC3 23 ALA B 164 LYS B 165 HOH B 310 HOH B 315 SITE 6 AC3 23 HOH B 338 HOH B 360 HOH B 361 SITE 1 AC4 8 THR B 76 GLN B 79 GLU B 80 HIS B 83 SITE 2 AC4 8 ALA B 86 TYR B 89 TRP B 114 GLU B 117 CRYST1 41.302 78.370 95.501 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024212 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010471 0.00000