PDB Short entry for 2HGF HEADER HEPATOCYTE GROWTH FACTOR 18-DEC-97 2HGF TITLE HAIRPIN LOOP CONTAINING DOMAIN OF HEPATOCYTE GROWTH FACTOR, NMR, TITLE 2 MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AMINO TERMINAL DOMAIN; COMPND 5 SYNONYM: HGF/N; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEPATOCYTE GROWTH FACTOR, SCATTER FACTOR, HAIRPIN LOOP, HEPARIN KEYWDS 2 BINDING, PLASMINOGEN RELATED, NK1 EXPDTA SOLUTION NMR AUTHOR H.ZHOU,M.J.MAZZULLA,J.D.KAUFMAN,S.J.STAHL,P.T.WINGFIELD,J.S.RUBIN, AUTHOR 2 D.P.BOTTARO,R.A.BYRD REVDAT 3 09-MAR-22 2HGF 1 REMARK REVDAT 2 24-FEB-09 2HGF 1 VERSN REVDAT 1 24-JUN-98 2HGF 0 JRNL AUTH H.ZHOU,M.J.MAZZULLA,J.D.KAUFMAN,S.J.STAHL,P.T.WINGFIELD, JRNL AUTH 2 J.S.RUBIN,D.P.BOTTARO,R.A.BYRD JRNL TITL THE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF JRNL TITL 2 HEPATOCYTE GROWTH FACTOR REVEALS A POTENTIAL HEPARIN-BINDING JRNL TITL 3 SITE. JRNL REF STRUCTURE V. 6 109 1998 JRNL REFN ISSN 0969-2126 JRNL PMID 9493272 JRNL DOI 10.1016/S0969-2126(98)00012-4 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.J.STAHL,P.T.WINGFIELD,J.D.KAUFMAN,L.K.PANNELL,V.CIOCE, REMARK 1 AUTH 2 H.SAKATA,W.G.TAYLOR,J.S.RUBIN,D.P.BOTTARO REMARK 1 TITL FUNCTIONAL AND BIOPHYSICAL CHARACTERIZATION OF RECOMBINANT REMARK 1 TITL 2 HUMAN HEPATOCYTE GROWTH FACTOR ISOFORMS PRODUCED IN REMARK 1 TITL 3 ESCHERICHIA COLI REMARK 1 REF BIOCHEM.J. V. 326 763 1997 REMARK 1 REFN ISSN 0264-6021 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178188. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SEE REFERENCE. REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR3.8 REMARK 210 METHOD USED : DISTANCE-GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : RESTRAINED, MINIMIZED MEAN REMARK 210 STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 87 H TYR A 119 1.50 REMARK 500 O ARG A 33 H ARG A 36 1.51 REMARK 500 O ALA A 86 H PHE A 99 1.51 REMARK 500 H PHE A 87 O TYR A 119 1.52 REMARK 500 H LYS A 43 O GLU A 120 1.54 REMARK 500 O GLY A 113 H GLU A 115 1.54 REMARK 500 H ILE A 53 O GLY A 107 1.57 REMARK 500 H VAL A 64 O LYS A 94 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 32 77.86 -177.54 REMARK 500 LYS A 34 -92.01 38.86 REMARK 500 ILE A 51 -145.81 -122.26 REMARK 500 ALA A 56 40.25 -100.05 REMARK 500 LYS A 58 -154.76 -125.56 REMARK 500 ARG A 76 94.40 -42.73 REMARK 500 ASN A 77 -152.03 -61.42 REMARK 500 LYS A 78 26.55 42.91 REMARK 500 THR A 83 18.35 56.72 REMARK 500 CYS A 84 81.49 56.30 REMARK 500 SER A 105 177.55 -56.25 REMARK 500 GLU A 111 -154.82 -123.35 REMARK 500 PHE A 112 -115.22 -136.71 REMARK 500 HIS A 114 -57.42 64.58 REMARK 500 PHE A 116 -160.87 -79.59 REMARK 500 ILE A 125 104.89 -43.59 REMARK 500 ARG A 126 157.24 -39.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 33 0.31 SIDE CHAIN REMARK 500 ARG A 35 0.32 SIDE CHAIN REMARK 500 ARG A 36 0.31 SIDE CHAIN REMARK 500 ARG A 73 0.25 SIDE CHAIN REMARK 500 ARG A 76 0.22 SIDE CHAIN REMARK 500 ARG A 93 0.31 SIDE CHAIN REMARK 500 ARG A 126 0.31 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2HGF A 31 127 UNP P14210 HGF_HUMAN 31 127 SEQRES 1 A 97 GLY GLN ARG LYS ARG ARG ASN THR ILE HIS GLU PHE LYS SEQRES 2 A 97 LYS SER ALA LYS THR THR LEU ILE LYS ILE ASP PRO ALA SEQRES 3 A 97 LEU LYS ILE LYS THR LYS LYS VAL ASN THR ALA ASP GLN SEQRES 4 A 97 CYS ALA ASN ARG CYS THR ARG ASN LYS GLY LEU PRO PHE SEQRES 5 A 97 THR CYS LYS ALA PHE VAL PHE ASP LYS ALA ARG LYS GLN SEQRES 6 A 97 CYS LEU TRP PHE PRO PHE ASN SER MET SER SER GLY VAL SEQRES 7 A 97 LYS LYS GLU PHE GLY HIS GLU PHE ASP LEU TYR GLU ASN SEQRES 8 A 97 LYS ASP TYR ILE ARG ASN HELIX 1 B ILE A 39 GLU A 41 5 3 HELIX 2 A ALA A 67 THR A 75 1 9 SHEET 1 CEN 5 PHE A 42 ALA A 46 0 SHEET 2 CEN 5 LYS A 60 LYS A 63 1 SHEET 3 CEN 5 ALA A 86 ASP A 90 1 SHEET 4 CEN 5 GLN A 95 PHE A 99 -1 SHEET 5 CEN 5 ASP A 117 ASN A 121 1 SHEET 1 MIN 2 THR A 49 ILE A 51 0 SHEET 2 MIN 2 LYS A 109 GLU A 111 -1 SSBOND 1 CYS A 70 CYS A 96 1555 1555 2.02 SSBOND 2 CYS A 74 CYS A 84 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000