PDB Short entry for 2HKF HEADER IMMUNE SYSTEM 04-JUL-06 2HKF TITLE CRYSTAL STRUCTURE OF THE COMPLEX FAB M75- PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN LIGHT CHAIN FAB FRAGMENT; COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: IMMUNOGLOBULIN HEAVY CHAIN FAB FRAGMENT; COMPND 6 CHAIN: H; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: CARBONIC ANHYDRASE 9; COMPND 9 CHAIN: P; COMPND 10 SYNONYM: CARBONIC ANHYDRASE IX, CARBONATE DEHYDRATASE IX, CA-IX, COMPND 11 CAIX, MEMBRANE ANTIGEN MN, P54/58N, RENAL CELL CARCINOMA-ASSOCIATED COMPND 12 ANTIGEN G250, RCC-ASSOCIATED ANTIGEN G250, PMW1; COMPND 13 EC: 4.2.1.1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL: HYBRIDOMA CELLS; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 CELL: HYBRIDOMA CELLS; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 14 OF THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN). KEYWDS IMMUNOGLOBULIN, FAB FRAGMENT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.KRAL,P.MADER,R.STOURACOVA,M.FABRY,M.HOREJSI,J.BRYNDA REVDAT 5 13-JUL-11 2HKF 1 VERSN REVDAT 4 09-JUN-09 2HKF 1 REVDAT REVDAT 3 24-FEB-09 2HKF 1 VERSN REVDAT 2 02-DEC-08 2HKF 1 JRNL REVDAT 1 13-NOV-07 2HKF 0 JRNL AUTH V.KRAL,P.MADER,R.COLLARD,M.FABRY,M.HOREJSI,P.REZACOVA, JRNL AUTH 2 M.KOZISEK,J.ZAVADA,J.SEDLACEK,L.RULISEK,J.BRYNDA JRNL TITL STABILIZATION OF ANTIBODY STRUCTURE UPON ASSOCIATION TO A JRNL TITL 2 HUMAN CARBONIC ANHYDRASE IX EPITOPE STUDIED BY X-RAY JRNL TITL 3 CRYSTALLOGRAPHY, MICROCALORIMETRY, AND MOLECULAR DYNAMICS JRNL TITL 4 SIMULATIONS. JRNL REF PROTEINS V. 71 1275 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18041760 JRNL DOI 10.1002/PROT.21821 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 23175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1243 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1562 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3351 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.83000 REMARK 3 B13 (A**2) : 0.44000 REMARK 3 B23 (A**2) : 0.22000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.240 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.134 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3447 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4703 ; 1.380 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 6.347 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;38.297 ;24.493 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;16.751 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.765 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 533 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2599 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1456 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2291 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 281 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2233 ; 0.650 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3556 ; 1.058 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1397 ; 1.699 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1143 ; 2.592 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 112 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0981 8.2051 -13.2830 REMARK 3 T TENSOR REMARK 3 T11: -0.1138 T22: -0.1110 REMARK 3 T33: -0.1194 T12: -0.0331 REMARK 3 T13: 0.0115 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.9882 L22: 1.6316 REMARK 3 L33: 1.1299 L12: -1.1598 REMARK 3 L13: 0.4357 L23: -0.3351 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: 0.0111 S13: -0.1075 REMARK 3 S21: -0.0153 S22: -0.0042 S23: -0.0689 REMARK 3 S31: 0.0210 S32: 0.0590 S33: -0.0075 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 113 L 219 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0019 -13.1406 16.0383 REMARK 3 T TENSOR REMARK 3 T11: -0.0611 T22: -0.0874 REMARK 3 T33: -0.0834 T12: 0.0000 REMARK 3 T13: -0.0050 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.5898 L22: 0.8807 REMARK 3 L33: 3.4497 L12: 0.3713 REMARK 3 L13: -1.8755 L23: -0.8662 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.0675 S13: 0.0153 REMARK 3 S21: 0.1496 S22: 0.0484 S23: 0.0578 REMARK 3 S31: -0.0034 S32: -0.1113 S33: -0.0561 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 2 H 118 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1916 21.5456 0.6657 REMARK 3 T TENSOR REMARK 3 T11: -0.1013 T22: -0.0771 REMARK 3 T33: -0.0718 T12: 0.0066 REMARK 3 T13: -0.0186 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.3608 L22: 1.1313 REMARK 3 L33: 3.0710 L12: -0.8463 REMARK 3 L13: -0.0387 L23: -0.0977 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: -0.1198 S13: 0.0971 REMARK 3 S21: 0.0860 S22: 0.0058 S23: -0.0471 REMARK 3 S31: -0.1207 S32: -0.0674 S33: 0.0583 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 119 H 218 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2460 -0.0361 23.5292 REMARK 3 T TENSOR REMARK 3 T11: 0.0092 T22: -0.0650 REMARK 3 T33: -0.0090 T12: -0.0260 REMARK 3 T13: -0.0322 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 4.6016 L22: 4.1544 REMARK 3 L33: 3.3234 L12: -2.8505 REMARK 3 L13: -0.4537 L23: 0.5270 REMARK 3 S TENSOR REMARK 3 S11: -0.2538 S12: -0.1652 S13: 0.1806 REMARK 3 S21: 0.2697 S22: 0.2441 S23: -0.3879 REMARK 3 S31: -0.0886 S32: 0.2228 S33: 0.0097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-06. REMARK 100 THE RCSB ID CODE IS RCSB038447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 150 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24418 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.868 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.04900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.19100 REMARK 200 R SYM FOR SHELL (I) : 0.19100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, PEG 2000, PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 135 REMARK 465 ASP H 136 REMARK 465 THR H 137 REMARK 465 SER H 162 REMARK 465 GLY H 163 REMARK 465 SER H 164 REMARK 465 LEU H 165 REMARK 465 SER H 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU P 1 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 361 O HOH L 373 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS L 199 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 56 -53.84 74.44 REMARK 500 LYS H 15 -3.01 77.49 REMARK 500 LEU H 29 -154.97 57.65 REMARK 500 ASN H 31 48.59 -87.58 REMARK 500 SER H 155 99.98 91.52 REMARK 500 SER H 168 49.54 -99.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 334 DISTANCE = 5.15 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 AT THE TIME OF PROCESSING, A UNP REFERENCE SEQUENCE REMARK 999 WAS NOT AVAILABLE FOR IMMUNOGLOBULIN LIGHT CHAIN FAB REMARK 999 FRAGMENT OR IMMUNOGLOBULIN HEAVY CHAIN FAB FRAGMENT. DBREF 2HKF P 1 9 UNP Q16790 CAH9_HUMAN 83 91 DBREF 2HKF L 1 219 PDB 2HKF 2HKF 1 219 DBREF 2HKF H 1 218 PDB 2HKF 2HKF 1 218 SEQRES 1 L 219 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU HIS SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO ASN LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 PHE CYS SER GLN SER THR HIS VAL PRO PHE THR PHE GLY SEQRES 9 L 219 SER GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 218 GLU VAL GLN VAL VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 218 PRO LYS GLY SER LEU LYS LEU SER CYS VAL VAL SER GLY SEQRES 3 H 218 SER THR LEU ASN ASN TYR ALA MET ASN TRP VAL ARG GLN SEQRES 4 H 218 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE ARG SEQRES 5 H 218 SER LYS SER ASN ASN TYR ALA THR TYR TYR ALA ASP SER SEQRES 6 H 218 VAL LYS ASP ARG PHE THR ILE SER ARG ASP ASP SER GLN SEQRES 7 H 218 SER MET ILE TYR LEU GLN MET ASN ASN LEU LYS THR GLU SEQRES 8 H 218 ASP THR ALA MET TYR TYR CYS VAL THR TYR GLY ASN HIS SEQRES 9 H 218 PRO PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 218 SER ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 218 ALA PRO GLY CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 H 218 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SER VAL SEQRES 13 H 218 THR VAL THR TRP ASN SER GLY SER LEU SER SER SER VAL SEQRES 14 H 218 HIS THR PHE PRO ALA LEU LEU GLN SER GLY LEU TYR THR SEQRES 15 H 218 MET SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 H 218 SER GLN THR VAL THR CYS SER VAL ALA HIS PRO ALA SER SEQRES 17 H 218 SER THR THR VAL ASP LYS LYS LEU GLU PRO SEQRES 1 P 9 LEU PRO GLY GLU GLU ASP LEU PRO GLY FORMUL 4 HOH *303(H2 O) HELIX 1 1 GLU L 84 LEU L 88 5 5 HELIX 2 2 SER L 126 SER L 132 1 7 HELIX 3 3 LYS L 188 HIS L 194 1 7 HELIX 4 4 ASN L 217 CYS L 219 5 3 HELIX 5 5 SER H 53 ASN H 57 5 5 HELIX 6 6 ASP H 76 GLN H 78 5 3 HELIX 7 7 LYS H 89 THR H 93 5 5 HELIX 8 8 PRO H 206 SER H 209 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 75 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 A 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 B 6 SER L 10 VAL L 13 0 SHEET 2 B 6 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 B 6 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 B 6 LEU L 38 GLN L 43 -1 N GLN L 43 O VAL L 90 SHEET 5 B 6 ASN L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 B 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 C 4 SER L 10 VAL L 13 0 SHEET 2 C 4 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 C 4 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 C 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 D 4 THR L 119 PHE L 123 0 SHEET 2 D 4 GLY L 134 PHE L 144 -1 O ASN L 142 N THR L 119 SHEET 3 D 4 TYR L 178 THR L 187 -1 O LEU L 184 N VAL L 137 SHEET 4 D 4 VAL L 164 TRP L 168 -1 N SER L 167 O SER L 181 SHEET 1 E 4 SER L 158 ARG L 160 0 SHEET 2 E 4 ASN L 150 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 E 4 SER L 196 HIS L 203 -1 O GLU L 200 N LYS L 152 SHEET 4 E 4 SER L 206 ASN L 215 -1 O ILE L 210 N ALA L 201 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 F 4 MET H 80 MET H 85 -1 O LEU H 83 N LEU H 20 SHEET 4 F 4 PHE H 70 ASP H 75 -1 N THR H 71 O GLN H 84 SHEET 1 G 6 GLY H 10 VAL H 12 0 SHEET 2 G 6 THR H 113 VAL H 117 1 O THR H 116 N GLY H 10 SHEET 3 G 6 ALA H 94 TYR H 101 -1 N TYR H 96 O THR H 113 SHEET 4 G 6 ALA H 33 GLN H 39 -1 N VAL H 37 O TYR H 97 SHEET 5 G 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 THR H 60 TYR H 62 -1 O TYR H 61 N ARG H 50 SHEET 1 H 4 SER H 126 LEU H 130 0 SHEET 2 H 4 SER H 141 TYR H 151 -1 O LEU H 147 N TYR H 128 SHEET 3 H 4 LEU H 180 PRO H 190 -1 O VAL H 189 N VAL H 142 SHEET 4 H 4 VAL H 169 GLN H 177 -1 N GLN H 177 O LEU H 180 SHEET 1 I 3 THR H 157 TRP H 160 0 SHEET 2 I 3 THR H 200 HIS H 205 -1 O SER H 202 N THR H 159 SHEET 3 I 3 THR H 210 LYS H 215 -1 O LYS H 214 N CYS H 201 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.05 SSBOND 2 CYS L 139 CYS L 199 1555 1555 2.05 SSBOND 3 CYS L 219 CYS H 134 1555 1555 2.04 SSBOND 4 CYS H 22 CYS H 98 1555 1555 2.02 SSBOND 5 CYS H 146 CYS H 201 1555 1555 2.02 CISPEP 1 THR L 7 PRO L 8 0 -9.92 CISPEP 2 VAL L 99 PRO L 100 0 3.13 CISPEP 3 TYR L 145 PRO L 146 0 -1.06 CISPEP 4 PHE H 152 PRO H 153 0 -4.68 CISPEP 5 TRP H 194 PRO H 195 0 4.01 CISPEP 6 LEU P 1 PRO P 2 0 -2.03 CRYST1 40.388 43.145 58.023 85.03 88.47 85.67 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024760 -0.001875 -0.000504 0.00000 SCALE2 0.000000 0.023244 -0.001980 0.00000 SCALE3 0.000000 0.000000 0.017303 0.00000