PDB Short entry for 2HVL HEADER HYDROLASE 29-JUL-06 2HVL TITLE CRYSTAL STRUCTURE OF THE HEPTP CATALYTIC DOMAIN C270S MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE LC-PTP, HEMATOPOIETIC PROTEIN- COMPND 5 TYROSINE PHOSPHATASE, HEPTP; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MH1 KEYWDS HEPTP, HUMAN TYROSINE PHOSPHATASE CATALYTIC DOMAIN, LC-PTP, PTPN7, KEYWDS 2 SUBSTRATE-TRAPPING MUTANT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.PAGE,D.CRITTON,M.RAGUSA REVDAT 6 14-FEB-24 2HVL 1 REMARK REVDAT 5 20-OCT-21 2HVL 1 REMARK SEQADV REVDAT 4 13-JUL-11 2HVL 1 VERSN REVDAT 3 17-MAR-09 2HVL 1 JRNL REVDAT 2 24-FEB-09 2HVL 1 VERSN REVDAT 1 07-AUG-07 2HVL 0 JRNL AUTH D.A.CRITTON,A.TORTAJADA,G.STETSON,W.PETI,R.PAGE JRNL TITL STRUCTURAL BASIS OF SUBSTRATE RECOGNITION BY HEMATOPOIETIC JRNL TITL 2 TYROSINE PHOSPHATASE JRNL REF BIOCHEMISTRY V. 47 13336 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 19053285 JRNL DOI 10.1021/BI801724N REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 20499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1464 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2247 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : -0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2372 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3237 ; 1.310 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 6.365 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;34.718 ;23.540 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 388 ;13.198 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;13.946 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1835 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1086 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1586 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 200 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.087 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1486 ; 1.584 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2352 ; 2.013 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 980 ; 2.936 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 879 ; 4.258 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 MOLPROBITY INDICATES THAT THE GLN220 IS IN FACT NOT AN REMARK 3 OUTLIER, BUT THAT ILE313 IS AN OUTLIER. REMARK 4 REMARK 4 2HVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21632 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC (FS) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM/POTASSIUM PHOSPHATE, ACETATE, REMARK 280 PH 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.99967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.99933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.99950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.99917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 9.99983 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 ASP A -10 REMARK 465 LYS A -9 REMARK 465 ILE A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ARG A 177 REMARK 465 GLU A 178 REMARK 465 GLY A 179 REMARK 465 LYS A 180 REMARK 465 GLU A 181 REMARK 465 LYS A 182 REMARK 465 GLU A 335 REMARK 465 GLU A 336 REMARK 465 PRO A 337 REMARK 465 SER A 338 REMARK 465 PRO A 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 48 CD OE1 OE2 REMARK 470 GLU A 91 CD OE1 OE2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 CYS A 183 SG REMARK 470 GLU A 190 CD OE1 OE2 REMARK 470 GLN A 202 CD OE1 NE2 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 THR A 259 OG1 CG2 REMARK 470 HIS A 262 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 69 56.19 -147.62 REMARK 500 ASP A 94 66.99 -105.67 REMARK 500 GLU A 190 -62.65 -135.71 REMARK 500 GLN A 220 -113.11 54.44 REMARK 500 ILE A 274 -36.77 -136.18 REMARK 500 ILE A 313 108.42 70.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 124 ASP A 125 -145.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZC0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HEPTP CATALYTIC DOMAIN, WT REMARK 900 RELATED ID: 2GPO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HEPTP CATALYTIC DOMAIN, S225D DBREF 2HVL A 44 339 UNP P35236 PTN7_HUMAN 65 360 SEQADV 2HVL MET A -13 UNP P35236 CLONING ARTIFACT SEQADV 2HVL GLY A -12 UNP P35236 CLONING ARTIFACT SEQADV 2HVL SER A -11 UNP P35236 CLONING ARTIFACT SEQADV 2HVL ASP A -10 UNP P35236 CLONING ARTIFACT SEQADV 2HVL LYS A -9 UNP P35236 CLONING ARTIFACT SEQADV 2HVL ILE A -8 UNP P35236 CLONING ARTIFACT SEQADV 2HVL HIS A -7 UNP P35236 EXPRESSION TAG SEQADV 2HVL HIS A -6 UNP P35236 EXPRESSION TAG SEQADV 2HVL HIS A -5 UNP P35236 EXPRESSION TAG SEQADV 2HVL HIS A -4 UNP P35236 EXPRESSION TAG SEQADV 2HVL HIS A -3 UNP P35236 EXPRESSION TAG SEQADV 2HVL HIS A -2 UNP P35236 EXPRESSION TAG SEQADV 2HVL MET A -1 UNP P35236 CLONING ARTIFACT SEQADV 2HVL SER A 270 UNP P35236 CYS 291 ENGINEERED MUTATION SEQRES 1 A 309 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 309 ASN THR PRO ARG GLU VAL THR LEU HIS PHE LEU ARG THR SEQRES 3 A 309 ALA GLY HIS PRO LEU THR ARG TRP ALA LEU GLN ARG GLN SEQRES 4 A 309 PRO PRO SER PRO LYS GLN LEU GLU GLU GLU PHE LEU LYS SEQRES 5 A 309 ILE PRO SER ASN PHE VAL SER PRO GLU ASP LEU ASP ILE SEQRES 6 A 309 PRO GLY HIS ALA SER LYS ASP ARG TYR LYS THR ILE LEU SEQRES 7 A 309 PRO ASN PRO GLN SER ARG VAL CYS LEU GLY ARG ALA GLN SEQRES 8 A 309 SER GLN GLU ASP GLY ASP TYR ILE ASN ALA ASN TYR ILE SEQRES 9 A 309 ARG GLY TYR ASP GLY LYS GLU LYS VAL TYR ILE ALA THR SEQRES 10 A 309 GLN GLY PRO MET PRO ASN THR VAL SER ASP PHE TRP GLU SEQRES 11 A 309 MET VAL TRP GLN GLU GLU VAL SER LEU ILE VAL MET LEU SEQRES 12 A 309 THR GLN LEU ARG GLU GLY LYS GLU LYS CYS VAL HIS TYR SEQRES 13 A 309 TRP PRO THR GLU GLU GLU THR TYR GLY PRO PHE GLN ILE SEQRES 14 A 309 ARG ILE GLN ASP MET LYS GLU CYS PRO GLU TYR THR VAL SEQRES 15 A 309 ARG GLN LEU THR ILE GLN TYR GLN GLU GLU ARG ARG SER SEQRES 16 A 309 VAL LYS HIS ILE LEU PHE SER ALA TRP PRO ASP HIS GLN SEQRES 17 A 309 THR PRO GLU SER ALA GLY PRO LEU LEU ARG LEU VAL ALA SEQRES 18 A 309 GLU VAL GLU GLU SER PRO GLU THR ALA ALA HIS PRO GLY SEQRES 19 A 309 PRO ILE VAL VAL HIS SER SER ALA GLY ILE GLY ARG THR SEQRES 20 A 309 GLY CYS PHE ILE ALA THR ARG ILE GLY CYS GLN GLN LEU SEQRES 21 A 309 LYS ALA ARG GLY GLU VAL ASP ILE LEU GLY ILE VAL CYS SEQRES 22 A 309 GLN LEU ARG LEU ASP ARG GLY GLY MET ILE GLN THR ALA SEQRES 23 A 309 GLU GLN TYR GLN PHE LEU HIS HIS THR LEU ALA LEU TYR SEQRES 24 A 309 ALA GLY GLN LEU PRO GLU GLU PRO SER PRO HET PO4 A 340 5 HET PO4 A 341 5 HET GOL A 401 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *216(H2 O) HELIX 1 1 THR A 45 ALA A 57 1 13 HELIX 2 2 ARG A 63 GLN A 69 1 7 HELIX 3 3 SER A 72 ILE A 83 1 12 HELIX 4 4 SER A 89 LEU A 93 5 5 HELIX 5 5 GLY A 97 ASP A 102 5 6 HELIX 6 6 GLY A 136 LYS A 140 5 5 HELIX 7 7 THR A 154 GLU A 165 1 12 HELIX 8 8 SER A 242 GLU A 255 1 14 HELIX 9 9 ILE A 274 GLY A 294 1 21 HELIX 10 10 ILE A 298 ARG A 309 1 12 HELIX 11 11 THR A 315 GLN A 332 1 18 SHEET 1 A 2 PRO A 60 THR A 62 0 SHEET 2 A 2 GLU A 295 ASP A 297 -1 O VAL A 296 N LEU A 61 SHEET 1 B 9 ARG A 114 CYS A 116 0 SHEET 2 B 9 TYR A 128 ILE A 134 -1 O ALA A 131 N VAL A 115 SHEET 3 B 9 TYR A 144 GLN A 148 -1 O TYR A 144 N ILE A 134 SHEET 4 B 9 ILE A 266 SER A 270 1 O VAL A 268 N ILE A 145 SHEET 5 B 9 LEU A 169 LEU A 173 1 N VAL A 171 O VAL A 267 SHEET 6 B 9 GLU A 222 PHE A 231 1 O ILE A 229 N MET A 172 SHEET 7 B 9 TYR A 210 TYR A 219 -1 N ARG A 213 O HIS A 228 SHEET 8 B 9 PHE A 197 GLU A 206 -1 N GLN A 202 O GLN A 214 SHEET 9 B 9 GLU A 191 TYR A 194 -1 N GLU A 192 O ILE A 199 SITE 1 AC1 10 SER A 270 SER A 271 ALA A 272 GLY A 273 SITE 2 AC1 10 ILE A 274 GLY A 275 ARG A 276 GLN A 314 SITE 3 AC1 10 HOH A 403 HOH A 461 SITE 1 AC2 8 THR A 174 GLN A 175 SER A 271 ARG A 276 SITE 2 AC2 8 HOH A 434 HOH A 441 HOH A 603 HOH A 614 SITE 1 AC3 7 GLN A 112 SER A 113 TYR A 133 GLU A 141 SITE 2 AC3 7 HOH A 407 HOH A 511 HOH A 588 CRYST1 127.106 127.106 59.999 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007867 0.004542 0.000000 0.00000 SCALE2 0.000000 0.009085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016667 0.00000