PDB Short entry for 2I6B HEADER TRANSFERASE 28-AUG-06 2I6B TITLE HUMAN ADENOSINE KINASE IN COMPLEX WITH AN ACETYLINIC INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADENYLATE KINASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-LIGAND COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.W.MUCHMORE REVDAT 4 30-AUG-23 2I6B 1 REMARK REVDAT 3 18-OCT-17 2I6B 1 REMARK REVDAT 2 24-FEB-09 2I6B 1 VERSN REVDAT 1 02-JAN-07 2I6B 0 JRNL AUTH S.W.MUCHMORE,R.A.SMITH,A.O.STEWART,M.D.COWART,A.GOMTSYAN, JRNL AUTH 2 M.A.MATULENKO,H.YU,J.M.SEVERIN,S.S.BHAGWAT,C.H.LEE, JRNL AUTH 3 E.A.KOWALUK,M.F.JARVIS,C.L.JAKOB JRNL TITL CRYSTAL STRUCTURES OF HUMAN ADENOSINE KINASE INHIBITOR JRNL TITL 2 COMPLEXES REVEAL TWO DISTINCT BINDING MODES. JRNL REF J.MED.CHEM. V. 49 6726 2006 JRNL REFN ISSN 0022-2623 JRNL PMID 17154503 JRNL DOI 10.1021/JM060189A REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 3 NUMBER OF REFLECTIONS : 25799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1378 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5151 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2I6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SILICON 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25799 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2I6A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, 0.1 M MGCL2, PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.10000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 331 REMARK 465 ARG A 332 REMARK 465 ARG A 333 REMARK 465 THR A 334 REMARK 465 GLY A 335 REMARK 465 CYS A 336 REMARK 465 THR A 337 REMARK 465 PHE A 338 REMARK 465 PRO A 339 REMARK 465 GLU A 340 REMARK 465 LYS A 341 REMARK 465 PRO A 342 REMARK 465 ASP A 343 REMARK 465 PHE A 344 REMARK 465 HIS A 345 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ILE B 329 REMARK 465 ILE B 330 REMARK 465 ILE B 331 REMARK 465 ARG B 332 REMARK 465 ARG B 333 REMARK 465 THR B 334 REMARK 465 GLY B 335 REMARK 465 CYS B 336 REMARK 465 THR B 337 REMARK 465 PHE B 338 REMARK 465 PRO B 339 REMARK 465 GLU B 340 REMARK 465 LYS B 341 REMARK 465 PRO B 342 REMARK 465 ASP B 343 REMARK 465 PHE B 344 REMARK 465 HIS B 345 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 73 CG1 ILE A 77 1.95 REMARK 500 O ASN B 116 N GLN B 118 2.18 REMARK 500 N52 89I B 500 O HOH B 585 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 117 O GLU B 233 1445 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 40 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ILE A 77 C - N - CA ANGL. DEV. = 21.3 DEGREES REMARK 500 ASP A 294 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 ILE A 329 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 PHE B 56 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 THR B 120 O - C - N ANGL. DEV. = -11.9 DEGREES REMARK 500 LEU B 172 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 PRO B 215 C - N - CD ANGL. DEV. = -14.1 DEGREES REMARK 500 LEU B 220 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 21 -159.80 -171.00 REMARK 500 VAL A 23 -150.39 -107.78 REMARK 500 ASP A 24 -81.36 -135.99 REMARK 500 LYS A 25 -32.13 -178.88 REMARK 500 SER A 32 102.22 42.23 REMARK 500 PRO A 35 -39.25 -27.64 REMARK 500 ASP A 43 -3.55 -59.47 REMARK 500 LEU A 48 -32.43 -37.16 REMARK 500 LYS A 54 -82.49 -99.15 REMARK 500 ILE A 77 49.32 -89.60 REMARK 500 PRO A 80 -163.10 -73.62 REMARK 500 ILE A 92 78.35 -100.92 REMARK 500 GLU A 105 32.66 -75.92 REMARK 500 HIS A 107 16.34 59.47 REMARK 500 THR A 122 144.48 -171.81 REMARK 500 ASP A 130 43.85 -103.20 REMARK 500 ARG A 132 78.35 -154.16 REMARK 500 ALA A 139 -115.23 46.60 REMARK 500 HIS A 149 -57.76 -145.45 REMARK 500 ASN A 190 59.16 34.09 REMARK 500 SER A 198 -49.15 64.14 REMARK 500 TYR A 206 30.33 -143.94 REMARK 500 GLU A 224 -77.48 -40.76 REMARK 500 GLU A 237 -46.39 68.82 REMARK 500 GLN A 249 -6.83 -57.04 REMARK 500 PRO A 252 102.26 -49.46 REMARK 500 MET A 254 -73.74 -43.67 REMARK 500 ASP A 269 92.43 172.85 REMARK 500 ASP A 270 179.37 62.70 REMARK 500 SER A 277 -97.13 -75.36 REMARK 500 GLN A 287 39.08 -145.21 REMARK 500 ASP A 288 149.90 -16.11 REMARK 500 GLN A 289 25.95 49.03 REMARK 500 LYS A 290 85.13 -60.73 REMARK 500 ILE A 293 99.31 -49.50 REMARK 500 ASP A 294 -32.42 -35.09 REMARK 500 THR A 295 -98.07 43.28 REMARK 500 ASP A 313 78.61 48.74 REMARK 500 ALA B 21 -141.96 -149.98 REMARK 500 VAL B 22 86.47 -156.59 REMARK 500 SER B 32 86.18 47.35 REMARK 500 GLU B 51 35.20 -92.38 REMARK 500 LYS B 54 -110.31 -103.67 REMARK 500 LYS B 55 -1.64 -46.59 REMARK 500 PHE B 56 -98.03 -95.76 REMARK 500 LYS B 57 -79.60 -173.95 REMARK 500 VAL B 58 116.77 72.89 REMARK 500 ALA B 62 105.34 -51.77 REMARK 500 ILE B 77 59.41 -96.32 REMARK 500 GLN B 78 -61.49 -22.55 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN B 196 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 89I A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 89I B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I6A RELATED DB: PDB REMARK 900 2I6A IS THE STRUCTURE OF HUMAN ADENOSINE KINASE IN COMPLEX WITH 5- REMARK 900 IODO-TUBERCIDIN DBREF 2I6B A 1 345 UNP Q5VXR3 Q5VXR3_HUMAN 1 345 DBREF 2I6B B 1 345 UNP Q5VXR3 Q5VXR3_HUMAN 1 345 SEQRES 1 A 345 MET THR SER VAL ARG GLU ASN ILE LEU PHE GLY MET GLY SEQRES 2 A 345 ASN PRO LEU LEU ASP ILE SER ALA VAL VAL ASP LYS ASP SEQRES 3 A 345 PHE LEU ASP LYS TYR SER LEU LYS PRO ASN ASP GLN ILE SEQRES 4 A 345 LEU ALA GLU ASP LYS HIS LYS GLU LEU PHE ASP GLU LEU SEQRES 5 A 345 VAL LYS LYS PHE LYS VAL GLU TYR HIS ALA GLY GLY SER SEQRES 6 A 345 THR GLN ASN SER ILE LYS VAL ALA GLN TRP MET ILE GLN SEQRES 7 A 345 GLN PRO HIS LYS ALA ALA THR PHE PHE GLY CYS ILE GLY SEQRES 8 A 345 ILE ASP LYS PHE GLY GLU ILE LEU LYS ARG LYS ALA ALA SEQRES 9 A 345 GLU ALA HIS VAL ASP ALA HIS TYR TYR GLU GLN ASN GLU SEQRES 10 A 345 GLN PRO THR GLY THR CYS ALA ALA CYS ILE THR GLY ASP SEQRES 11 A 345 ASN ARG SER LEU ILE ALA ASN LEU ALA ALA ALA ASN CYS SEQRES 12 A 345 TYR LYS LYS GLU LYS HIS LEU ASP LEU GLU LYS ASN TRP SEQRES 13 A 345 MET LEU VAL GLU LYS ALA ARG VAL CYS TYR ILE ALA GLY SEQRES 14 A 345 PHE PHE LEU THR VAL SER PRO GLU SER VAL LEU LYS VAL SEQRES 15 A 345 ALA HIS HIS ALA SER GLU ASN ASN ARG ILE PHE THR LEU SEQRES 16 A 345 ASN LEU SER ALA PRO PHE ILE SER GLN PHE TYR LYS GLU SEQRES 17 A 345 SER LEU MET LYS VAL MET PRO TYR VAL ASP ILE LEU PHE SEQRES 18 A 345 GLY ASN GLU THR GLU ALA ALA THR PHE ALA ARG GLU GLN SEQRES 19 A 345 GLY PHE GLU THR LYS ASP ILE LYS GLU ILE ALA LYS LYS SEQRES 20 A 345 THR GLN ALA LEU PRO LYS MET ASN SER LYS ARG GLN ARG SEQRES 21 A 345 ILE VAL ILE PHE THR GLN GLY ARG ASP ASP THR ILE MET SEQRES 22 A 345 ALA THR GLU SER GLU VAL THR ALA PHE ALA VAL LEU ASP SEQRES 23 A 345 GLN ASP GLN LYS GLU ILE ILE ASP THR ASN GLY ALA GLY SEQRES 24 A 345 ASP ALA PHE VAL GLY GLY PHE LEU SER GLN LEU VAL SER SEQRES 25 A 345 ASP LYS PRO LEU THR GLU CYS ILE ARG ALA GLY HIS TYR SEQRES 26 A 345 ALA ALA SER ILE ILE ILE ARG ARG THR GLY CYS THR PHE SEQRES 27 A 345 PRO GLU LYS PRO ASP PHE HIS SEQRES 1 B 345 MET THR SER VAL ARG GLU ASN ILE LEU PHE GLY MET GLY SEQRES 2 B 345 ASN PRO LEU LEU ASP ILE SER ALA VAL VAL ASP LYS ASP SEQRES 3 B 345 PHE LEU ASP LYS TYR SER LEU LYS PRO ASN ASP GLN ILE SEQRES 4 B 345 LEU ALA GLU ASP LYS HIS LYS GLU LEU PHE ASP GLU LEU SEQRES 5 B 345 VAL LYS LYS PHE LYS VAL GLU TYR HIS ALA GLY GLY SER SEQRES 6 B 345 THR GLN ASN SER ILE LYS VAL ALA GLN TRP MET ILE GLN SEQRES 7 B 345 GLN PRO HIS LYS ALA ALA THR PHE PHE GLY CYS ILE GLY SEQRES 8 B 345 ILE ASP LYS PHE GLY GLU ILE LEU LYS ARG LYS ALA ALA SEQRES 9 B 345 GLU ALA HIS VAL ASP ALA HIS TYR TYR GLU GLN ASN GLU SEQRES 10 B 345 GLN PRO THR GLY THR CYS ALA ALA CYS ILE THR GLY ASP SEQRES 11 B 345 ASN ARG SER LEU ILE ALA ASN LEU ALA ALA ALA ASN CYS SEQRES 12 B 345 TYR LYS LYS GLU LYS HIS LEU ASP LEU GLU LYS ASN TRP SEQRES 13 B 345 MET LEU VAL GLU LYS ALA ARG VAL CYS TYR ILE ALA GLY SEQRES 14 B 345 PHE PHE LEU THR VAL SER PRO GLU SER VAL LEU LYS VAL SEQRES 15 B 345 ALA HIS HIS ALA SER GLU ASN ASN ARG ILE PHE THR LEU SEQRES 16 B 345 ASN LEU SER ALA PRO PHE ILE SER GLN PHE TYR LYS GLU SEQRES 17 B 345 SER LEU MET LYS VAL MET PRO TYR VAL ASP ILE LEU PHE SEQRES 18 B 345 GLY ASN GLU THR GLU ALA ALA THR PHE ALA ARG GLU GLN SEQRES 19 B 345 GLY PHE GLU THR LYS ASP ILE LYS GLU ILE ALA LYS LYS SEQRES 20 B 345 THR GLN ALA LEU PRO LYS MET ASN SER LYS ARG GLN ARG SEQRES 21 B 345 ILE VAL ILE PHE THR GLN GLY ARG ASP ASP THR ILE MET SEQRES 22 B 345 ALA THR GLU SER GLU VAL THR ALA PHE ALA VAL LEU ASP SEQRES 23 B 345 GLN ASP GLN LYS GLU ILE ILE ASP THR ASN GLY ALA GLY SEQRES 24 B 345 ASP ALA PHE VAL GLY GLY PHE LEU SER GLN LEU VAL SER SEQRES 25 B 345 ASP LYS PRO LEU THR GLU CYS ILE ARG ALA GLY HIS TYR SEQRES 26 B 345 ALA ALA SER ILE ILE ILE ARG ARG THR GLY CYS THR PHE SEQRES 27 B 345 PRO GLU LYS PRO ASP PHE HIS HET 89I A 500 30 HET 89I B 500 30 HETNAM 89I 5-[4-(DIMETHYLAMINO)PHENYL]-6-[(6-MORPHOLIN-4- HETNAM 2 89I YLPYRIDIN-3-YL)ETHYNYL]PYRIMIDIN-4-AMINE FORMUL 3 89I 2(C23 H24 N6 O) FORMUL 5 HOH *236(H2 O) HELIX 1 1 HIS A 45 VAL A 53 5 9 HELIX 2 2 GLY A 64 MET A 76 1 13 HELIX 3 3 ASP A 93 GLU A 105 1 13 HELIX 4 4 ALA A 141 TYR A 144 5 4 HELIX 5 5 LEU A 152 ALA A 162 1 11 HELIX 6 6 PHE A 170 VAL A 174 5 5 HELIX 7 7 SER A 175 ASN A 189 1 15 HELIX 8 8 ALA A 199 TYR A 206 1 8 HELIX 9 9 TYR A 206 MET A 214 1 9 HELIX 10 10 PRO A 215 VAL A 217 5 3 HELIX 11 11 ASN A 223 GLY A 235 1 13 HELIX 12 12 ASP A 240 ALA A 250 1 11 HELIX 13 13 ALA A 298 VAL A 311 1 14 HELIX 14 14 PRO A 315 ALA A 327 1 13 HELIX 15 15 ASP B 24 SER B 32 1 9 HELIX 16 16 GLU B 42 LYS B 46 5 5 HELIX 17 17 GLY B 64 ILE B 77 1 14 HELIX 18 18 ASP B 93 GLU B 105 1 13 HELIX 19 19 LEU B 138 CYS B 143 5 6 HELIX 20 20 LEU B 152 ALA B 162 1 11 HELIX 21 21 PHE B 170 VAL B 174 5 5 HELIX 22 22 SER B 175 ASN B 189 1 15 HELIX 23 23 ALA B 199 TYR B 206 1 8 HELIX 24 24 TYR B 206 MET B 214 1 9 HELIX 25 25 PRO B 215 VAL B 217 5 3 HELIX 26 26 ASN B 223 GLY B 235 1 13 HELIX 27 27 ASP B 240 ALA B 250 1 11 HELIX 28 28 ALA B 298 VAL B 311 1 14 HELIX 29 29 PRO B 315 GLY B 323 1 9 SHEET 1 A 9 ASP A 109 GLN A 115 0 SHEET 2 A 9 ALA A 84 GLY A 91 1 N GLY A 88 O TYR A 113 SHEET 3 A 9 LEU A 9 MET A 12 1 N LEU A 9 O THR A 85 SHEET 4 A 9 VAL A 164 ALA A 168 1 O VAL A 164 N PHE A 10 SHEET 5 A 9 ILE A 192 ASN A 196 1 O THR A 194 N CYS A 165 SHEET 6 A 9 ILE A 219 GLY A 222 1 O PHE A 221 N LEU A 195 SHEET 7 A 9 ILE A 261 THR A 265 1 O THR A 265 N GLY A 222 SHEET 8 A 9 THR A 271 ALA A 274 -1 O ILE A 272 N PHE A 264 SHEET 9 A 9 THR A 280 ALA A 281 -1 O THR A 280 N MET A 273 SHEET 1 B 5 GLN A 38 LEU A 40 0 SHEET 2 B 5 SER A 133 ALA A 139 1 O ALA A 136 N ILE A 39 SHEET 3 B 5 THR A 120 ILE A 127 -1 N THR A 122 O ASN A 137 SHEET 4 B 5 LEU A 16 VAL A 22 1 N ILE A 19 O CYS A 123 SHEET 5 B 5 GLU A 59 GLY A 63 -1 O GLY A 63 N LEU A 16 SHEET 1 C 7 LEU B 9 GLY B 11 0 SHEET 2 C 7 VAL B 164 ALA B 168 1 O VAL B 164 N PHE B 10 SHEET 3 C 7 ILE B 192 ASN B 196 1 O ILE B 192 N CYS B 165 SHEET 4 C 7 ILE B 219 GLY B 222 1 O PHE B 221 N LEU B 195 SHEET 5 C 7 ILE B 261 PHE B 264 1 O ILE B 261 N LEU B 220 SHEET 6 C 7 ILE B 272 ALA B 274 -1 O ILE B 272 N PHE B 264 SHEET 7 C 7 VAL B 279 ALA B 281 -1 O THR B 280 N MET B 273 SHEET 1 D 5 ASP B 37 LEU B 40 0 SHEET 2 D 5 ARG B 132 ALA B 136 1 O LEU B 134 N ASP B 37 SHEET 3 D 5 THR B 122 ILE B 127 -1 N CYS B 126 O SER B 133 SHEET 4 D 5 LEU B 16 SER B 20 1 N ILE B 19 O ALA B 125 SHEET 5 D 5 GLU B 59 GLY B 63 -1 O GLY B 63 N LEU B 16 SHEET 1 E 2 THR B 85 PHE B 86 0 SHEET 2 E 2 ASP B 109 ALA B 110 1 O ASP B 109 N PHE B 86 SHEET 1 F 2 CYS B 89 GLY B 91 0 SHEET 2 F 2 TYR B 113 GLN B 115 1 O TYR B 113 N ILE B 90 CISPEP 1 GLN A 79 PRO A 80 0 -0.77 CISPEP 2 ALA A 327 SER A 328 0 6.20 CISPEP 3 GLN B 79 PRO B 80 0 5.97 SITE 1 AC1 13 ASN A 14 GLN A 38 ILE A 39 GLY A 64 SITE 2 AC1 13 SER A 65 ALA A 136 LEU A 138 PHE A 170 SITE 3 AC1 13 THR A 173 PHE A 201 TYR A 206 PHE B 205 SITE 4 AC1 13 89I B 500 SITE 1 AC2 10 PHE A 205 89I A 500 GLN B 38 ILE B 39 SITE 2 AC2 10 LEU B 40 SER B 65 LEU B 138 PHE B 170 SITE 3 AC2 10 TYR B 206 HOH B 585 CRYST1 71.180 58.200 89.210 90.00 107.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014049 0.000000 0.004440 0.00000 SCALE2 0.000000 0.017182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011756 0.00000