PDB Short entry for 2I6U HEADER TRANSFERASE 29-AUG-06 2I6U TITLE CRYSTAL STRUCTURE OF ORNITHINE CARBAMOYLTRANSFERASE COMPLEXED WITH TITLE 2 CARBAMOYL PHOSPHATE AND L-NORVALINE FROM MYCOBACTERIUM TUBERCULOSIS TITLE 3 (RV1656) AT 2.2 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORNITHINE CARBAMOYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: OTCASE; COMPND 5 EC: 2.1.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: ARGF, RV1656, MT1694, MTCY06H11.21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS MYCOBACTERIUM TUBERCULOSIS, ORNITHINE CARBAMYOLTRANSFERASE, CARBAMOYL KEYWDS 2 PHOSPHATE, L-NORVALINE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SANKARANARAYANAN,F.MORADIAN,L.T.CHERNEY,C.GAREN,M.M.CHERNEY, AUTHOR 2 M.N.G.JAMES,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 4 30-AUG-23 2I6U 1 REMARK REVDAT 3 24-FEB-09 2I6U 1 VERSN REVDAT 2 29-APR-08 2I6U 1 JRNL REVDAT 1 26-JUN-07 2I6U 0 JRNL AUTH R.SANKARANARAYANAN,M.M.CHERNEY,L.T.CHERNEY,C.R.GAREN, JRNL AUTH 2 F.MORADIAN,M.N.JAMES JRNL TITL THE CRYSTAL STRUCTURES OF ORNITHINE CARBAMOYLTRANSFERASE JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS AND ITS TERNARY COMPLEX WITH JRNL TITL 3 CARBAMOYL PHOSPHATE AND L-NORVALINE REVEAL THE ENZYME'S JRNL TITL 4 CATALYTIC MECHANISM JRNL REF J.MOL.BIOL. V. 375 1052 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18062991 JRNL DOI 10.1016/J.JMB.2007.11.025 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 73.8 REMARK 3 NUMBER OF REFLECTIONS : 48946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2592 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2060 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6978 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 572 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : -1.14000 REMARK 3 B33 (A**2) : 1.72000 REMARK 3 B12 (A**2) : -0.57000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.280 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.930 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7163 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9747 ; 1.659 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 918 ; 6.265 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 327 ;33.212 ;23.486 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1128 ;16.276 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 69 ;18.548 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1125 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5481 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3547 ; 0.208 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4857 ; 0.312 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 937 ; 0.196 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.174 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.183 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4693 ; 0.883 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7350 ; 1.500 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2706 ; 2.503 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2397 ; 4.030 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2I6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000039210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979462 REMARK 200 MONOCHROMATOR : SIDE-SCATTERING CUBEROOT I-BEAM REMARK 200 BENT SINGLE CRYSTAL; ASYMETRIC REMARK 200 CUT 12.2 DEGS. REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; SINGLE REMARK 200 CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.568 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 73.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1FB5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M MAGNESIUM SULFATE, 0.1M BIS-TRIS, REMARK 280 8% PEG 400, 3% ETHANOL, 3MM L-NORVALINE, 3MM CARBAMOYL PHOSPHATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 308.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 154.33333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 231.50000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.16667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 385.83333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 308.66667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 154.33333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 77.16667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 231.50000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 385.83333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASSYMETRIC UNIT OF THE CRYSTAL CONTAINS TRIMER WHICH IS THE REMARK 300 BIOLOGICAL ENTITY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 125 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG C 101 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 101 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 2 124.94 67.31 REMARK 500 THR A 102 -157.34 -137.60 REMARK 500 PHE A 103 -113.83 -105.71 REMARK 500 LEU A 123 130.42 128.45 REMARK 500 PHE A 184 59.47 -119.50 REMARK 500 LEU A 265 147.18 84.54 REMARK 500 ASP A 271 -93.01 -99.50 REMARK 500 ASP B 81 31.74 71.59 REMARK 500 PHE B 103 -104.56 -92.51 REMARK 500 LEU B 123 127.86 144.66 REMARK 500 VAL B 239 -55.54 -121.22 REMARK 500 LEU B 265 151.42 72.01 REMARK 500 ASP B 271 -97.07 -100.09 REMARK 500 ILE C 2 109.27 57.22 REMARK 500 PHE C 103 -109.55 -91.81 REMARK 500 LEU C 123 130.07 130.29 REMARK 500 PHE C 184 50.13 -148.11 REMARK 500 THR C 225 152.33 -46.92 REMARK 500 LEU C 265 153.06 78.33 REMARK 500 ASP C 271 -90.03 -100.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NVA A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NVA B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CP C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NVA C 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV1656 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 VAL1 IS IN THE PROTEIN SEQUENCE LISTED AT THE REMARK 999 TB CONSORTIUM WEBSITE UNDER THE ACCESSION CODE RV1656. DBREF 2I6U A 2 307 UNP P0A5M8 OTC_MYCTU 2 307 DBREF 2I6U B 2 307 UNP P0A5M8 OTC_MYCTU 2 307 DBREF 2I6U C 2 307 UNP P0A5M8 OTC_MYCTU 2 307 SEQADV 2I6U VAL A 1 UNP P0A5M8 SEE REMARK 999 SEQADV 2I6U VAL B 1 UNP P0A5M8 SEE REMARK 999 SEQADV 2I6U VAL C 1 UNP P0A5M8 SEE REMARK 999 SEQRES 1 A 307 VAL ILE ARG HIS PHE LEU ARG ASP ASP ASP LEU SER PRO SEQRES 2 A 307 ALA GLU GLN ALA GLU VAL LEU GLU LEU ALA ALA GLU LEU SEQRES 3 A 307 LYS LYS ASP PRO VAL SER ARG ARG PRO LEU GLN GLY PRO SEQRES 4 A 307 ARG GLY VAL ALA VAL ILE PHE ASP LYS ASN SER THR ARG SEQRES 5 A 307 THR ARG PHE SER PHE GLU LEU GLY ILE ALA GLN LEU GLY SEQRES 6 A 307 GLY HIS ALA VAL VAL VAL ASP SER GLY SER THR GLN LEU SEQRES 7 A 307 GLY ARG ASP GLU THR LEU GLN ASP THR ALA LYS VAL LEU SEQRES 8 A 307 SER ARG TYR VAL ASP ALA ILE VAL TRP ARG THR PHE GLY SEQRES 9 A 307 GLN GLU ARG LEU ASP ALA MET ALA SER VAL ALA THR VAL SEQRES 10 A 307 PRO VAL ILE ASN ALA LEU SER ASP GLU PHE HIS PRO CYS SEQRES 11 A 307 GLN VAL LEU ALA ASP LEU GLN THR ILE ALA GLU ARG LYS SEQRES 12 A 307 GLY ALA LEU ARG GLY LEU ARG LEU SER TYR PHE GLY ASP SEQRES 13 A 307 GLY ALA ASN ASN MET ALA HIS SER LEU LEU LEU GLY GLY SEQRES 14 A 307 VAL THR ALA GLY ILE HIS VAL THR VAL ALA ALA PRO GLU SEQRES 15 A 307 GLY PHE LEU PRO ASP PRO SER VAL ARG ALA ALA ALA GLU SEQRES 16 A 307 ARG ARG ALA GLN ASP THR GLY ALA SER VAL THR VAL THR SEQRES 17 A 307 ALA ASP ALA HIS ALA ALA ALA ALA GLY ALA ASP VAL LEU SEQRES 18 A 307 VAL THR ASP THR TRP THR SER MET GLY GLN GLU ASN ASP SEQRES 19 A 307 GLY LEU ASP ARG VAL LYS PRO PHE ARG PRO PHE GLN LEU SEQRES 20 A 307 ASN SER ARG LEU LEU ALA LEU ALA ASP SER ASP ALA ILE SEQRES 21 A 307 VAL LEU HIS CYS LEU PRO ALA HIS ARG GLY ASP GLU ILE SEQRES 22 A 307 THR ASP ALA VAL MET ASP GLY PRO ALA SER ALA VAL TRP SEQRES 23 A 307 ASP GLU ALA GLU ASN ARG LEU HIS ALA GLN LYS ALA LEU SEQRES 24 A 307 LEU VAL TRP LEU LEU GLU ARG SER SEQRES 1 B 307 VAL ILE ARG HIS PHE LEU ARG ASP ASP ASP LEU SER PRO SEQRES 2 B 307 ALA GLU GLN ALA GLU VAL LEU GLU LEU ALA ALA GLU LEU SEQRES 3 B 307 LYS LYS ASP PRO VAL SER ARG ARG PRO LEU GLN GLY PRO SEQRES 4 B 307 ARG GLY VAL ALA VAL ILE PHE ASP LYS ASN SER THR ARG SEQRES 5 B 307 THR ARG PHE SER PHE GLU LEU GLY ILE ALA GLN LEU GLY SEQRES 6 B 307 GLY HIS ALA VAL VAL VAL ASP SER GLY SER THR GLN LEU SEQRES 7 B 307 GLY ARG ASP GLU THR LEU GLN ASP THR ALA LYS VAL LEU SEQRES 8 B 307 SER ARG TYR VAL ASP ALA ILE VAL TRP ARG THR PHE GLY SEQRES 9 B 307 GLN GLU ARG LEU ASP ALA MET ALA SER VAL ALA THR VAL SEQRES 10 B 307 PRO VAL ILE ASN ALA LEU SER ASP GLU PHE HIS PRO CYS SEQRES 11 B 307 GLN VAL LEU ALA ASP LEU GLN THR ILE ALA GLU ARG LYS SEQRES 12 B 307 GLY ALA LEU ARG GLY LEU ARG LEU SER TYR PHE GLY ASP SEQRES 13 B 307 GLY ALA ASN ASN MET ALA HIS SER LEU LEU LEU GLY GLY SEQRES 14 B 307 VAL THR ALA GLY ILE HIS VAL THR VAL ALA ALA PRO GLU SEQRES 15 B 307 GLY PHE LEU PRO ASP PRO SER VAL ARG ALA ALA ALA GLU SEQRES 16 B 307 ARG ARG ALA GLN ASP THR GLY ALA SER VAL THR VAL THR SEQRES 17 B 307 ALA ASP ALA HIS ALA ALA ALA ALA GLY ALA ASP VAL LEU SEQRES 18 B 307 VAL THR ASP THR TRP THR SER MET GLY GLN GLU ASN ASP SEQRES 19 B 307 GLY LEU ASP ARG VAL LYS PRO PHE ARG PRO PHE GLN LEU SEQRES 20 B 307 ASN SER ARG LEU LEU ALA LEU ALA ASP SER ASP ALA ILE SEQRES 21 B 307 VAL LEU HIS CYS LEU PRO ALA HIS ARG GLY ASP GLU ILE SEQRES 22 B 307 THR ASP ALA VAL MET ASP GLY PRO ALA SER ALA VAL TRP SEQRES 23 B 307 ASP GLU ALA GLU ASN ARG LEU HIS ALA GLN LYS ALA LEU SEQRES 24 B 307 LEU VAL TRP LEU LEU GLU ARG SER SEQRES 1 C 307 VAL ILE ARG HIS PHE LEU ARG ASP ASP ASP LEU SER PRO SEQRES 2 C 307 ALA GLU GLN ALA GLU VAL LEU GLU LEU ALA ALA GLU LEU SEQRES 3 C 307 LYS LYS ASP PRO VAL SER ARG ARG PRO LEU GLN GLY PRO SEQRES 4 C 307 ARG GLY VAL ALA VAL ILE PHE ASP LYS ASN SER THR ARG SEQRES 5 C 307 THR ARG PHE SER PHE GLU LEU GLY ILE ALA GLN LEU GLY SEQRES 6 C 307 GLY HIS ALA VAL VAL VAL ASP SER GLY SER THR GLN LEU SEQRES 7 C 307 GLY ARG ASP GLU THR LEU GLN ASP THR ALA LYS VAL LEU SEQRES 8 C 307 SER ARG TYR VAL ASP ALA ILE VAL TRP ARG THR PHE GLY SEQRES 9 C 307 GLN GLU ARG LEU ASP ALA MET ALA SER VAL ALA THR VAL SEQRES 10 C 307 PRO VAL ILE ASN ALA LEU SER ASP GLU PHE HIS PRO CYS SEQRES 11 C 307 GLN VAL LEU ALA ASP LEU GLN THR ILE ALA GLU ARG LYS SEQRES 12 C 307 GLY ALA LEU ARG GLY LEU ARG LEU SER TYR PHE GLY ASP SEQRES 13 C 307 GLY ALA ASN ASN MET ALA HIS SER LEU LEU LEU GLY GLY SEQRES 14 C 307 VAL THR ALA GLY ILE HIS VAL THR VAL ALA ALA PRO GLU SEQRES 15 C 307 GLY PHE LEU PRO ASP PRO SER VAL ARG ALA ALA ALA GLU SEQRES 16 C 307 ARG ARG ALA GLN ASP THR GLY ALA SER VAL THR VAL THR SEQRES 17 C 307 ALA ASP ALA HIS ALA ALA ALA ALA GLY ALA ASP VAL LEU SEQRES 18 C 307 VAL THR ASP THR TRP THR SER MET GLY GLN GLU ASN ASP SEQRES 19 C 307 GLY LEU ASP ARG VAL LYS PRO PHE ARG PRO PHE GLN LEU SEQRES 20 C 307 ASN SER ARG LEU LEU ALA LEU ALA ASP SER ASP ALA ILE SEQRES 21 C 307 VAL LEU HIS CYS LEU PRO ALA HIS ARG GLY ASP GLU ILE SEQRES 22 C 307 THR ASP ALA VAL MET ASP GLY PRO ALA SER ALA VAL TRP SEQRES 23 C 307 ASP GLU ALA GLU ASN ARG LEU HIS ALA GLN LYS ALA LEU SEQRES 24 C 307 LEU VAL TRP LEU LEU GLU ARG SER HET SO4 A 800 5 HET SO4 A 801 5 HET CP A 500 8 HET NVA A 600 8 HET SO4 B 801 5 HET CP B 501 8 HET NVA B 601 8 HET SO4 C 801 5 HET SO4 C 802 5 HET CP C 502 8 HET NVA C 602 8 HETNAM SO4 SULFATE ION HETNAM CP PHOSPHORIC ACID MONO(FORMAMIDE)ESTER HETNAM NVA NORVALINE FORMUL 4 SO4 5(O4 S 2-) FORMUL 6 CP 3(C H4 N O5 P) FORMUL 7 NVA 3(C5 H11 N O2) FORMUL 15 HOH *572(H2 O) HELIX 1 1 ARG A 7 LEU A 11 5 5 HELIX 2 2 SER A 12 ASP A 29 1 18 HELIX 3 3 THR A 51 LEU A 64 1 14 HELIX 4 4 GLY A 74 ASP A 81 5 8 HELIX 5 5 THR A 83 TYR A 94 1 12 HELIX 6 6 GLY A 104 ALA A 115 1 12 HELIX 7 7 HIS A 128 GLY A 144 1 17 HELIX 8 8 ASN A 159 ALA A 172 1 14 HELIX 9 9 ASP A 187 GLY A 202 1 16 HELIX 10 10 ASP A 210 ALA A 216 1 7 HELIX 11 11 VAL A 239 GLN A 246 5 8 HELIX 12 12 ASN A 248 ALA A 255 1 8 HELIX 13 13 THR A 274 ASP A 279 1 6 HELIX 14 14 ALA A 284 ARG A 306 1 23 HELIX 15 15 ARG B 7 LEU B 11 5 5 HELIX 16 16 SER B 12 ASP B 29 1 18 HELIX 17 17 THR B 51 LEU B 64 1 14 HELIX 18 18 GLY B 74 ASP B 81 5 8 HELIX 19 19 THR B 83 TYR B 94 1 12 HELIX 20 20 GLY B 104 SER B 113 1 10 HELIX 21 21 HIS B 128 GLY B 144 1 17 HELIX 22 22 ASN B 159 ALA B 172 1 14 HELIX 23 23 ASP B 187 GLY B 202 1 16 HELIX 24 24 ASP B 210 ALA B 216 1 7 HELIX 25 25 VAL B 239 GLN B 246 5 8 HELIX 26 26 ASN B 248 LEU B 254 1 7 HELIX 27 27 THR B 274 ASP B 279 1 6 HELIX 28 28 ALA B 284 ARG B 306 1 23 HELIX 29 29 ARG C 7 LEU C 11 5 5 HELIX 30 30 SER C 12 ASP C 29 1 18 HELIX 31 31 THR C 51 LEU C 64 1 14 HELIX 32 32 GLY C 74 ASP C 81 5 8 HELIX 33 33 THR C 83 SER C 92 1 10 HELIX 34 34 GLY C 104 ALA C 115 1 12 HELIX 35 35 HIS C 128 GLY C 144 1 17 HELIX 36 36 ASN C 159 ALA C 172 1 14 HELIX 37 37 ASP C 187 GLY C 202 1 16 HELIX 38 38 ASP C 210 ALA C 216 1 7 HELIX 39 39 VAL C 239 GLN C 246 5 8 HELIX 40 40 ASN C 248 ALA C 253 1 6 HELIX 41 41 THR C 274 ASP C 279 1 6 HELIX 42 42 ALA C 284 ARG C 306 1 23 SHEET 1 A 4 HIS A 67 ASP A 72 0 SHEET 2 A 4 GLY A 41 PHE A 46 1 N VAL A 44 O VAL A 69 SHEET 3 A 4 VAL A 95 ARG A 101 1 O ASP A 96 N GLY A 41 SHEET 4 A 4 VAL A 119 ASN A 121 1 O ILE A 120 N ILE A 98 SHEET 1 B 5 VAL A 205 THR A 208 0 SHEET 2 B 5 HIS A 175 ALA A 179 1 N VAL A 178 O THR A 206 SHEET 3 B 5 ARG A 150 PHE A 154 1 N TYR A 153 O ALA A 179 SHEET 4 B 5 VAL A 220 THR A 223 1 O VAL A 220 N SER A 152 SHEET 5 B 5 ILE A 260 HIS A 263 1 O ILE A 260 N LEU A 221 SHEET 1 C 4 HIS B 67 ASP B 72 0 SHEET 2 C 4 GLY B 41 PHE B 46 1 N VAL B 42 O VAL B 69 SHEET 3 C 4 VAL B 95 ARG B 101 1 O VAL B 99 N ALA B 43 SHEET 4 C 4 VAL B 119 ASN B 121 1 O ILE B 120 N TRP B 100 SHEET 1 D 5 SER B 204 THR B 208 0 SHEET 2 D 5 HIS B 175 ALA B 179 1 N VAL B 178 O THR B 206 SHEET 3 D 5 ARG B 150 PHE B 154 1 N TYR B 153 O ALA B 179 SHEET 4 D 5 VAL B 220 THR B 223 1 O VAL B 220 N SER B 152 SHEET 5 D 5 ILE B 260 HIS B 263 1 O ILE B 260 N LEU B 221 SHEET 1 E 4 HIS C 67 ASP C 72 0 SHEET 2 E 4 GLY C 41 PHE C 46 1 N VAL C 44 O VAL C 69 SHEET 3 E 4 VAL C 95 ARG C 101 1 O VAL C 99 N ALA C 43 SHEET 4 E 4 VAL C 119 ASN C 121 1 O ILE C 120 N TRP C 100 SHEET 1 F 5 VAL C 205 THR C 208 0 SHEET 2 F 5 HIS C 175 ALA C 179 1 N VAL C 178 O THR C 208 SHEET 3 F 5 ARG C 150 PHE C 154 1 N TYR C 153 O ALA C 179 SHEET 4 F 5 VAL C 220 THR C 223 1 O VAL C 222 N SER C 152 SHEET 5 F 5 ILE C 260 HIS C 263 1 O LEU C 262 N LEU C 221 CISPEP 1 GLY A 38 PRO A 39 0 0.54 CISPEP 2 LEU A 265 PRO A 266 0 6.30 CISPEP 3 GLY B 38 PRO B 39 0 -0.08 CISPEP 4 LEU B 265 PRO B 266 0 7.76 CISPEP 5 GLY C 38 PRO C 39 0 0.75 CISPEP 6 LEU C 265 PRO C 266 0 0.79 SITE 1 AC1 4 ARG A 34 GLN A 37 HOH A 805 ARG B 34 SITE 1 AC2 6 ASN A 248 SER A 249 THR A 274 HOH A 812 SITE 2 AC2 6 HOH A 862 HOH A 922 SITE 1 AC3 4 ASN B 248 SER B 249 THR B 274 HOH B 881 SITE 1 AC4 5 ASN C 248 SER C 249 THR C 274 ALA C 276 SITE 2 AC4 5 HOH C 867 SITE 1 AC5 4 ARG C 243 ASN C 248 HOH C 845 HOH C 974 SITE 1 AC6 12 SER A 50 THR A 51 ARG A 52 THR A 53 SITE 2 AC6 12 ARG A 101 HIS A 128 GLN A 131 CYS A 264 SITE 3 AC6 12 LEU A 265 ARG A 292 NVA A 600 GLN C 77 SITE 1 AC7 9 ASN A 159 ASN A 160 ASP A 224 SER A 228 SITE 2 AC7 9 MET A 229 LEU A 265 CP A 500 HOH A 830 SITE 3 AC7 9 HOH A 858 SITE 1 AC8 12 GLN A 77 SER B 50 THR B 51 ARG B 52 SITE 2 AC8 12 THR B 53 ARG B 101 HIS B 128 GLN B 131 SITE 3 AC8 12 CYS B 264 LEU B 265 ARG B 292 NVA B 601 SITE 1 AC9 9 HOH A 853 LEU B 123 ASN B 160 ASP B 224 SITE 2 AC9 9 SER B 228 MET B 229 LEU B 265 CP B 501 SITE 3 AC9 9 HOH B 858 SITE 1 BC1 12 GLN B 77 SER C 50 THR C 51 ARG C 52 SITE 2 BC1 12 THR C 53 ARG C 101 HIS C 128 GLN C 131 SITE 3 BC1 12 CYS C 264 LEU C 265 ARG C 292 NVA C 602 SITE 1 BC2 11 HOH B 815 LEU C 123 HIS C 128 ASN C 159 SITE 2 BC2 11 ASN C 160 ASP C 224 SER C 228 MET C 229 SITE 3 BC2 11 LEU C 265 CP C 502 HOH C 808 CRYST1 99.149 99.149 463.000 90.00 90.00 120.00 P 65 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010086 0.005823 0.000000 0.00000 SCALE2 0.000000 0.011646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002160 0.00000