PDB Short entry for 2IBD HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-SEP-06 2IBD TITLE CRYSTAL STRUCTURE OF PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN TITLE 2 RHA5900 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSSIBLE TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 101510; SOURCE 4 STRAIN: RHA1; SOURCE 5 GENE: RHA1_RO04598; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVES; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET DERIVATIVES KEYWDS PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN, RHODOCOCCUS SP. RHA1, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,E.EVDOKIMOVA,O.KAGAN,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 13-JUL-11 2IBD 1 VERSN REVDAT 3 24-FEB-09 2IBD 1 VERSN REVDAT 2 14-AUG-07 2IBD 1 AUTHOR JRNL REVDAT 1 10-OCT-06 2IBD 0 JRNL AUTH C.CHANG,E.EVDOKIMOVA,O.KAGAN,A.SAVCHENKO,A.M.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PROBABLE TRANSCRIPTIONAL REGULATORY JRNL TITL 2 PROTEIN RHA5900 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 60340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3200 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4254 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2975 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 485 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.550 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3173 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4327 ; 1.332 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 415 ; 4.696 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;31.140 ;22.885 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 536 ;13.031 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.304 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2442 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1583 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2260 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 392 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.062 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 51 ; 0.196 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1990 ; 1.240 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3136 ; 1.808 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1336 ; 2.611 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1177 ; 3.593 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3326 ; 1.484 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 486 ; 5.685 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3100 ; 2.785 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-06. REMARK 100 THE RCSB ID CODE IS RCSB039372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63568 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 44.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL, 0.1M TRIS PH8.5, 26% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.58650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.58650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.29400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.38900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.29400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.38900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.58650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.29400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.38900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.58650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.29400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.38900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 206 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 205 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 433 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 ASP A 7 REMARK 465 ASP A 8 REMARK 465 THR A 9 REMARK 465 SER A 10 REMARK 465 HIS A 203 REMARK 465 ASN A 204 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 465 ASP B 7 REMARK 465 ASP B 8 REMARK 465 THR B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 SER B 13 REMARK 465 GLY B 14 REMARK 465 HIS B 203 REMARK 465 ASN B 204 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 202 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 167 O HOH A 435 1.41 REMARK 500 NH2 ARG B 78 O HOH B 458 1.57 REMARK 500 OE1 GLU A 59 O HOH A 258 1.77 REMARK 500 NH2 ARG B 78 O HOH B 485 2.02 REMARK 500 O HOH A 378 O HOH A 443 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 258 O HOH A 258 4555 1.98 REMARK 500 NH2 ARG B 38 O HOH A 436 4555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 124 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 356 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH B 461 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B 506 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH B 533 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH B 538 DISTANCE = 5.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 228 O REMARK 620 2 HOH B 378 O 84.7 REMARK 620 3 HOH A 289 O 90.2 82.0 REMARK 620 4 HOH A 276 O 173.8 90.9 84.9 REMARK 620 5 HOH A 208 O 95.2 101.4 173.9 90.0 REMARK 620 6 HOH A 255 O 90.4 172.6 92.5 93.5 84.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5995 RELATED DB: TARGETDB DBREF 2IBD A 1 204 UNP Q0S7V2 Q0S7V2_RHOSR 1 204 DBREF 2IBD B 1 204 UNP Q0S7V2 Q0S7V2_RHOSR 1 204 SEQADV 2IBD MSE A 1 UNP Q0S7V2 MET 1 MODIFIED RESIDUE SEQADV 2IBD MSE A 61 UNP Q0S7V2 MET 61 MODIFIED RESIDUE SEQADV 2IBD MSE A 140 UNP Q0S7V2 MET 140 MODIFIED RESIDUE SEQADV 2IBD MSE B 1 UNP Q0S7V2 MET 1 MODIFIED RESIDUE SEQADV 2IBD MSE B 61 UNP Q0S7V2 MET 61 MODIFIED RESIDUE SEQADV 2IBD MSE B 140 UNP Q0S7V2 MET 140 MODIFIED RESIDUE SEQRES 1 A 204 MSE THR PRO PRO PRO ALA ASP ASP THR SER GLY LYS SER SEQRES 2 A 204 GLY ARG ARG THR GLU LEU LEU ASP ILE ALA ALA THR LEU SEQRES 3 A 204 PHE ALA GLU ARG GLY LEU ARG ALA THR THR VAL ARG ASP SEQRES 4 A 204 ILE ALA ASP ALA ALA GLY ILE LEU SER GLY SER LEU TYR SEQRES 5 A 204 HIS HIS PHE ASP SER LYS GLU SER MSE VAL ASP GLU ILE SEQRES 6 A 204 LEU ARG GLY PHE LEU ASP ASP LEU PHE GLY LYS TYR ARG SEQRES 7 A 204 GLU ILE VAL ALA SER GLY LEU ASP SER ARG ALA THR LEU SEQRES 8 A 204 GLU ALA LEU VAL THR THR SER TYR GLU ALA ILE ASP ALA SEQRES 9 A 204 SER HIS SER ALA VAL ALA ILE TYR GLN ASP GLU VAL LYS SEQRES 10 A 204 HIS LEU VAL ALA ASN GLU ARG PHE THR TYR LEU SER GLU SEQRES 11 A 204 LEU ASN THR GLU PHE ARG GLU LEU TRP MSE GLY VAL LEU SEQRES 12 A 204 GLU ALA GLY VAL LYS ASP GLY SER PHE ARG SER ASP ILE SEQRES 13 A 204 ASP VAL GLU LEU ALA PHE ARG PHE LEU ARG ASP THR ALA SEQRES 14 A 204 TRP VAL ALA VAL ARG TRP TYR ARG PRO GLY GLY SER VAL SEQRES 15 A 204 THR VAL ASP THR VAL ALA LYS GLN TYR LEU SER ILE VAL SEQRES 16 A 204 LEU ASP GLY LEU ALA SER PRO HIS ASN SEQRES 1 B 204 MSE THR PRO PRO PRO ALA ASP ASP THR SER GLY LYS SER SEQRES 2 B 204 GLY ARG ARG THR GLU LEU LEU ASP ILE ALA ALA THR LEU SEQRES 3 B 204 PHE ALA GLU ARG GLY LEU ARG ALA THR THR VAL ARG ASP SEQRES 4 B 204 ILE ALA ASP ALA ALA GLY ILE LEU SER GLY SER LEU TYR SEQRES 5 B 204 HIS HIS PHE ASP SER LYS GLU SER MSE VAL ASP GLU ILE SEQRES 6 B 204 LEU ARG GLY PHE LEU ASP ASP LEU PHE GLY LYS TYR ARG SEQRES 7 B 204 GLU ILE VAL ALA SER GLY LEU ASP SER ARG ALA THR LEU SEQRES 8 B 204 GLU ALA LEU VAL THR THR SER TYR GLU ALA ILE ASP ALA SEQRES 9 B 204 SER HIS SER ALA VAL ALA ILE TYR GLN ASP GLU VAL LYS SEQRES 10 B 204 HIS LEU VAL ALA ASN GLU ARG PHE THR TYR LEU SER GLU SEQRES 11 B 204 LEU ASN THR GLU PHE ARG GLU LEU TRP MSE GLY VAL LEU SEQRES 12 B 204 GLU ALA GLY VAL LYS ASP GLY SER PHE ARG SER ASP ILE SEQRES 13 B 204 ASP VAL GLU LEU ALA PHE ARG PHE LEU ARG ASP THR ALA SEQRES 14 B 204 TRP VAL ALA VAL ARG TRP TYR ARG PRO GLY GLY SER VAL SEQRES 15 B 204 THR VAL ASP THR VAL ALA LYS GLN TYR LEU SER ILE VAL SEQRES 16 B 204 LEU ASP GLY LEU ALA SER PRO HIS ASN MODRES 2IBD MSE A 61 MET SELENOMETHIONINE MODRES 2IBD MSE A 140 MET SELENOMETHIONINE MODRES 2IBD MSE B 61 MET SELENOMETHIONINE MODRES 2IBD MSE B 140 MET SELENOMETHIONINE HET MSE A 61 8 HET MSE A 140 8 HET MSE B 61 8 HET MSE B 140 8 HET MG B 301 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 MG MG 2+ FORMUL 4 HOH *485(H2 O) HELIX 1 1 GLY A 11 GLY A 31 1 21 HELIX 2 2 THR A 36 ALA A 44 1 9 HELIX 3 3 LEU A 47 PHE A 55 1 9 HELIX 4 4 SER A 57 SER A 83 1 27 HELIX 5 5 ASP A 86 SER A 105 1 20 HELIX 6 6 SER A 105 GLU A 115 1 11 HELIX 7 7 VAL A 116 VAL A 120 5 5 HELIX 8 8 ASN A 122 ARG A 124 5 3 HELIX 9 9 PHE A 125 ASP A 149 1 25 HELIX 10 10 ASP A 157 ALA A 169 1 13 HELIX 11 11 TRP A 170 TRP A 175 5 6 HELIX 12 12 THR A 183 GLY A 198 1 16 HELIX 13 13 ARG B 15 GLY B 31 1 17 HELIX 14 14 THR B 36 GLY B 45 1 10 HELIX 15 15 LEU B 47 HIS B 53 1 7 HELIX 16 16 SER B 57 SER B 83 1 27 HELIX 17 17 ASP B 86 SER B 105 1 20 HELIX 18 18 SER B 105 GLU B 115 1 11 HELIX 19 19 VAL B 116 VAL B 120 5 5 HELIX 20 20 ASN B 122 PHE B 125 5 4 HELIX 21 21 THR B 126 ASP B 149 1 24 HELIX 22 22 ASP B 157 ALA B 169 1 13 HELIX 23 23 TRP B 170 TRP B 175 5 6 HELIX 24 24 THR B 183 GLY B 198 1 16 LINK MG MG B 301 O HOH A 228 1555 1555 2.06 LINK MG MG B 301 O HOH B 378 1555 1555 2.07 LINK MG MG B 301 O HOH A 289 1555 1555 2.04 LINK MG MG B 301 O HOH A 276 1555 1555 2.15 LINK MG MG B 301 O HOH A 208 1555 1555 1.93 LINK C SER A 60 N MSE A 61 1555 1555 1.34 LINK C MSE A 61 N VAL A 62 1555 1555 1.33 LINK C TRP A 139 N MSE A 140 1555 1555 1.34 LINK C MSE A 140 N GLY A 141 1555 1555 1.34 LINK C SER B 60 N MSE B 61 1555 1555 1.33 LINK C MSE B 61 N VAL B 62 1555 1555 1.34 LINK C TRP B 139 N MSE B 140 1555 1555 1.34 LINK C MSE B 140 N GLY B 141 1555 1555 1.33 LINK MG MG B 301 O HOH A 255 1555 8555 2.13 SITE 1 AC1 6 HOH A 208 HOH A 228 HOH A 255 HOH A 276 SITE 2 AC1 6 HOH A 289 HOH B 378 CRYST1 70.588 118.778 97.173 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014167 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010291 0.00000