PDB Short entry for 2IBN HEADER OXIDOREDUCTASE 11-SEP-06 2IBN TITLE CRYSTAL STRUCTURE OF HUMAN MYO-INOSITOL OXYGENASE (MIOX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL OXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MYO-INOSITOL OXYGENASE, ALDEHYDE REDUCTASE-LIKE 6, RENAL- COMPND 5 SPECIFIC OXIDOREDUCTASE, KIDNEY-SPECIFIC PROTEIN 32; COMPND 6 EC: 1.13.99.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS REDUCTASE, INOSITOL, DIIRON, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.M.HALLBERG,R.D.BUSAM,C.ARROWSMITH,H.BERGLUND,R.COLLINS,A.EDWARDS, AUTHOR 2 M.EHN,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM,M.HOGBOM, AUTHOR 3 L.HOLMBERG-SCHIAVONE,I.JOHANSSON,T.KARLBERG,T.KOTENYOVA,P.NILSSON- AUTHOR 4 EHLE,P.NORDLUND,T.NYMAN,D.OGG,J.SAGEMARK,P.STENMARK,M.SUNDSTROM, AUTHOR 5 J.UPPENBERG,S.VAN DEN BERG,J.WEIGELT,A.G.THORSELL,C.PERSSON, AUTHOR 6 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 13-DEC-23 2IBN 1 REMARK SEQADV SSBOND LINK REVDAT 4 18-OCT-17 2IBN 1 REMARK REVDAT 3 17-JUN-08 2IBN 1 REMARK REVDAT 2 10-JUN-08 2IBN 1 JRNL VERSN REVDAT 1 17-OCT-06 2IBN 0 JRNL AUTH A.G.THORSELL,C.PERSSON,N.VOEVODSKAYA,R.D.BUSAM, JRNL AUTH 2 M.HAMMARSTROM,S.GRASLUND,A.GRASLUND,B.M.HALLBERG JRNL TITL STRUCTURAL AND BIOPHYSICAL CHARACTERIZATION OF HUMAN JRNL TITL 2 MYO-INOSITOL OXYGENASE JRNL REF J.BIOL.CHEM. V. 283 15209 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18364358 JRNL DOI 10.1074/JBC.M800348200 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.3 REMARK 3 NUMBER OF REFLECTIONS : 71962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3633 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 19.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.4650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 544 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.243 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4163 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5655 ; 1.522 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 483 ; 6.374 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;34.930 ;23.521 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 663 ;13.919 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.820 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 571 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3272 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2184 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2821 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 446 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.033 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2483 ; 1.178 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3914 ; 1.469 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1951 ; 2.579 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1741 ; 3.578 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IBN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9876 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(311) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140563 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 67.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 27.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 7.8, 1.8 M AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.85750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.93050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.85750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.93050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 89 REMARK 465 ASP A 90 REMARK 465 VAL A 91 REMARK 465 TYR A 255 REMARK 465 THR A 256 REMARK 465 LYS A 257 REMARK 465 CYS A 258 REMARK 465 PRO A 259 REMARK 465 ASP A 260 REMARK 465 ASP B 88 REMARK 465 PRO B 89 REMARK 465 ASP B 90 REMARK 465 VAL B 91 REMARK 465 ASP B 92 REMARK 465 PHE B 93 REMARK 465 TYR B 255 REMARK 465 THR B 256 REMARK 465 LYS B 257 REMARK 465 CYS B 258 REMARK 465 PRO B 259 REMARK 465 ASP B 260 REMARK 465 LEU B 261 REMARK 465 PRO B 262 REMARK 465 ASP B 263 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 212 O HOH A 919 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 194 C HIS B 194 O -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 113 77.62 -103.57 REMARK 500 VAL A 139 -53.26 -137.31 REMARK 500 SER A 208 56.92 -97.98 REMARK 500 CYS A 279 59.15 -157.49 REMARK 500 LYS B 113 73.97 -104.84 REMARK 500 VAL B 139 -52.46 -140.88 REMARK 500 SER B 208 58.73 -91.41 REMARK 500 CYS B 279 60.10 -161.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 703 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 98 NE2 REMARK 620 2 HIS A 123 NE2 98.3 REMARK 620 3 ASP A 124 OD2 93.1 87.5 REMARK 620 4 ASP A 253 OD1 89.8 91.0 176.9 REMARK 620 5 HOH A 737 O 88.0 170.7 85.4 95.8 REMARK 620 6 HOH A 812 O 172.2 89.5 87.1 90.2 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 704 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 HIS A 194 NE2 86.6 REMARK 620 3 HIS A 220 NE2 95.6 85.2 REMARK 620 4 I1N A 710 O1 97.8 100.9 165.6 REMARK 620 5 I1N A 710 O6 178.4 94.5 83.3 83.1 REMARK 620 6 HOH A 812 O 93.1 172.5 87.4 86.6 85.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 705 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 98 NE2 REMARK 620 2 HIS B 123 NE2 106.0 REMARK 620 3 ASP B 124 OD2 97.9 87.7 REMARK 620 4 ASP B 253 OD1 86.7 88.1 174.5 REMARK 620 5 HOH B 782 O 86.7 165.8 84.1 99.3 REMARK 620 6 HOH B 807 O 161.6 89.8 92.0 84.3 79.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 706 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD1 REMARK 620 2 HIS B 194 NE2 90.4 REMARK 620 3 HIS B 220 NE2 96.1 88.8 REMARK 620 4 I1N B 709 O1 95.2 96.6 167.5 REMARK 620 5 I1N B 709 O6 178.0 90.9 85.4 83.2 REMARK 620 6 HOH B 807 O 93.7 175.2 93.1 80.6 84.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I1N A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I1N B 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYS B 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYS A 708 DBREF 2IBN A 38 285 UNP Q9UGB7 MIOX_HUMAN 38 285 DBREF 2IBN B 38 285 UNP Q9UGB7 MIOX_HUMAN 38 285 SEQADV 2IBN SER A 36 UNP Q9UGB7 CLONING ARTIFACT SEQADV 2IBN MSE A 37 UNP Q9UGB7 CLONING ARTIFACT SEQADV 2IBN SER B 36 UNP Q9UGB7 CLONING ARTIFACT SEQADV 2IBN MSE B 37 UNP Q9UGB7 CLONING ARTIFACT SEQRES 1 A 250 SER MSE ASP ARG VAL PHE THR THR TYR LYS LEU MSE HIS SEQRES 2 A 250 THR HIS GLN THR VAL ASP PHE VAL ARG SER LYS HIS ALA SEQRES 3 A 250 GLN PHE GLY GLY PHE SER TYR LYS LYS MSE THR VAL MSE SEQRES 4 A 250 GLU ALA VAL ASP LEU LEU ASP GLY LEU VAL ASP GLU SER SEQRES 5 A 250 ASP PRO ASP VAL ASP PHE PRO ASN SER PHE HIS ALA PHE SEQRES 6 A 250 GLN THR ALA GLU GLY ILE ARG LYS ALA HIS PRO ASP LYS SEQRES 7 A 250 ASP TRP PHE HIS LEU VAL GLY LEU LEU HIS ASP LEU GLY SEQRES 8 A 250 LYS VAL LEU ALA LEU PHE GLY GLU PRO GLN TRP ALA VAL SEQRES 9 A 250 VAL GLY ASP THR PHE PRO VAL GLY CYS ARG PRO GLN ALA SEQRES 10 A 250 SER VAL VAL PHE CYS ASP SER THR PHE GLN ASP ASN PRO SEQRES 11 A 250 ASP LEU GLN ASP PRO ARG TYR SER THR GLU LEU GLY MSE SEQRES 12 A 250 TYR GLN PRO HIS CYS GLY LEU ASP ARG VAL LEU MSE SER SEQRES 13 A 250 TRP GLY HIS ASP GLU TYR MSE TYR GLN VAL MSE LYS PHE SEQRES 14 A 250 ASN LYS PHE SER LEU PRO PRO GLU ALA PHE TYR MSE ILE SEQRES 15 A 250 ARG PHE HIS SER PHE TYR PRO TRP HIS THR GLY ARG ASP SEQRES 16 A 250 TYR GLN GLN LEU CYS SER GLN GLN ASP LEU ALA MSE LEU SEQRES 17 A 250 PRO TRP VAL ARG GLU PHE ASN LYS PHE ASP LEU TYR THR SEQRES 18 A 250 LYS CYS PRO ASP LEU PRO ASP VAL ASP LYS LEU ARG PRO SEQRES 19 A 250 TYR TYR GLN GLY LEU ILE ASP LYS TYR CYS PRO GLY ILE SEQRES 20 A 250 LEU SER TRP SEQRES 1 B 250 SER MSE ASP ARG VAL PHE THR THR TYR LYS LEU MSE HIS SEQRES 2 B 250 THR HIS GLN THR VAL ASP PHE VAL ARG SER LYS HIS ALA SEQRES 3 B 250 GLN PHE GLY GLY PHE SER TYR LYS LYS MSE THR VAL MSE SEQRES 4 B 250 GLU ALA VAL ASP LEU LEU ASP GLY LEU VAL ASP GLU SER SEQRES 5 B 250 ASP PRO ASP VAL ASP PHE PRO ASN SER PHE HIS ALA PHE SEQRES 6 B 250 GLN THR ALA GLU GLY ILE ARG LYS ALA HIS PRO ASP LYS SEQRES 7 B 250 ASP TRP PHE HIS LEU VAL GLY LEU LEU HIS ASP LEU GLY SEQRES 8 B 250 LYS VAL LEU ALA LEU PHE GLY GLU PRO GLN TRP ALA VAL SEQRES 9 B 250 VAL GLY ASP THR PHE PRO VAL GLY CYS ARG PRO GLN ALA SEQRES 10 B 250 SER VAL VAL PHE CYS ASP SER THR PHE GLN ASP ASN PRO SEQRES 11 B 250 ASP LEU GLN ASP PRO ARG TYR SER THR GLU LEU GLY MSE SEQRES 12 B 250 TYR GLN PRO HIS CYS GLY LEU ASP ARG VAL LEU MSE SER SEQRES 13 B 250 TRP GLY HIS ASP GLU TYR MSE TYR GLN VAL MSE LYS PHE SEQRES 14 B 250 ASN LYS PHE SER LEU PRO PRO GLU ALA PHE TYR MSE ILE SEQRES 15 B 250 ARG PHE HIS SER PHE TYR PRO TRP HIS THR GLY ARG ASP SEQRES 16 B 250 TYR GLN GLN LEU CYS SER GLN GLN ASP LEU ALA MSE LEU SEQRES 17 B 250 PRO TRP VAL ARG GLU PHE ASN LYS PHE ASP LEU TYR THR SEQRES 18 B 250 LYS CYS PRO ASP LEU PRO ASP VAL ASP LYS LEU ARG PRO SEQRES 19 B 250 TYR TYR GLN GLY LEU ILE ASP LYS TYR CYS PRO GLY ILE SEQRES 20 B 250 LEU SER TRP MODRES 2IBN MSE A 37 MET SELENOMETHIONINE MODRES 2IBN MSE A 47 MET SELENOMETHIONINE MODRES 2IBN MSE A 71 MET SELENOMETHIONINE MODRES 2IBN MSE A 74 MET SELENOMETHIONINE MODRES 2IBN MSE A 178 MET SELENOMETHIONINE MODRES 2IBN MSE A 190 MET SELENOMETHIONINE MODRES 2IBN MSE A 198 MET SELENOMETHIONINE MODRES 2IBN MSE A 202 MET SELENOMETHIONINE MODRES 2IBN MSE A 216 MET SELENOMETHIONINE MODRES 2IBN MSE A 242 MET SELENOMETHIONINE MODRES 2IBN MSE B 37 MET SELENOMETHIONINE MODRES 2IBN MSE B 47 MET SELENOMETHIONINE MODRES 2IBN MSE B 71 MET SELENOMETHIONINE MODRES 2IBN MSE B 74 MET SELENOMETHIONINE MODRES 2IBN MSE B 178 MET SELENOMETHIONINE MODRES 2IBN MSE B 190 MET SELENOMETHIONINE MODRES 2IBN MSE B 198 MET SELENOMETHIONINE MODRES 2IBN MSE B 202 MET SELENOMETHIONINE MODRES 2IBN MSE B 216 MET SELENOMETHIONINE MODRES 2IBN MSE B 242 MET SELENOMETHIONINE HET MSE A 37 8 HET MSE A 47 8 HET MSE A 71 8 HET MSE A 74 8 HET MSE A 178 16 HET MSE A 190 8 HET MSE A 198 8 HET MSE A 202 8 HET MSE A 216 8 HET MSE A 242 8 HET MSE B 37 16 HET MSE B 47 8 HET MSE B 71 8 HET MSE B 74 8 HET MSE B 178 16 HET MSE B 190 8 HET MSE B 198 8 HET MSE B 202 8 HET MSE B 216 8 HET MSE B 242 8 HET FE A 703 1 HET FE A 704 1 HET SO4 A 701 5 HET I1N A 710 12 HET CYS A 708 7 HET FE B 705 1 HET FE B 706 1 HET SO4 B 702 5 HET I1N B 709 12 HET CYS B 707 7 HETNAM MSE SELENOMETHIONINE HETNAM FE FE (III) ION HETNAM SO4 SULFATE ION HETNAM I1N (2S,3R,4R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXANONE HETNAM CYS CYSTEINE FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 3 FE 4(FE 3+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 I1N 2(C6 H10 O6) FORMUL 7 CYS 2(C3 H7 N O2 S) FORMUL 13 HOH *544(H2 O) HELIX 1 1 MSE A 37 GLN A 51 1 15 HELIX 2 2 THR A 52 GLY A 64 1 13 HELIX 3 3 THR A 72 LEU A 80 1 9 HELIX 4 4 ASP A 81 LEU A 83 5 3 HELIX 5 5 PRO A 94 HIS A 110 1 17 HELIX 6 6 LYS A 113 HIS A 123 1 11 HELIX 7 7 ASP A 124 GLY A 126 5 3 HELIX 8 8 LYS A 127 PHE A 132 1 6 HELIX 9 9 PRO A 135 VAL A 139 5 5 HELIX 10 10 PHE A 156 PHE A 161 1 6 HELIX 11 11 ASN A 164 ASP A 169 5 6 HELIX 12 12 GLY A 184 VAL A 188 5 5 HELIX 13 13 GLY A 193 LYS A 206 1 14 HELIX 14 14 PRO A 210 HIS A 220 1 11 HELIX 15 15 PHE A 222 THR A 227 1 6 HELIX 16 16 SER A 236 LEU A 254 1 19 HELIX 17 17 ASP A 263 CYS A 279 1 17 HELIX 18 18 MSE B 37 GLN B 51 1 15 HELIX 19 19 THR B 52 GLY B 64 1 13 HELIX 20 20 THR B 72 LEU B 80 1 9 HELIX 21 21 ASP B 81 LEU B 83 5 3 HELIX 22 22 PRO B 94 HIS B 110 1 17 HELIX 23 23 LYS B 113 HIS B 123 1 11 HELIX 24 24 ASP B 124 GLY B 126 5 3 HELIX 25 25 LYS B 127 PHE B 132 1 6 HELIX 26 26 PRO B 135 VAL B 139 5 5 HELIX 27 27 PHE B 156 PHE B 161 1 6 HELIX 28 28 ASN B 164 GLN B 168 5 5 HELIX 29 29 GLY B 184 VAL B 188 5 5 HELIX 30 30 GLY B 193 ASN B 205 1 13 HELIX 31 31 PRO B 210 HIS B 220 1 11 HELIX 32 32 PHE B 222 THR B 227 1 6 HELIX 33 33 SER B 236 ASP B 253 1 18 HELIX 34 34 LEU B 267 CYS B 279 1 13 SHEET 1 A 2 LYS A 69 MSE A 71 0 SHEET 2 A 2 LEU A 283 TRP A 285 -1 O TRP A 285 N LYS A 69 SHEET 1 B 2 LYS B 69 MSE B 71 0 SHEET 2 B 2 LEU B 283 TRP B 285 -1 O TRP B 285 N LYS B 69 SSBOND 1 CYS A 235 CYS A 708 1555 1555 2.03 SSBOND 2 CYS B 235 CYS B 707 1555 1555 2.06 LINK C SER A 36 N MSE A 37 1555 1555 1.32 LINK C MSE A 37 N ASP A 38 1555 1555 1.31 LINK C LEU A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N HIS A 48 1555 1555 1.33 LINK C LYS A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N THR A 72 1555 1555 1.33 LINK C VAL A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N GLU A 75 1555 1555 1.33 LINK C GLY A 177 N AMSE A 178 1555 1555 1.33 LINK C GLY A 177 N BMSE A 178 1555 1555 1.33 LINK C AMSE A 178 N TYR A 179 1555 1555 1.33 LINK C BMSE A 178 N TYR A 179 1555 1555 1.33 LINK C LEU A 189 N MSE A 190 1555 1555 1.33 LINK C MSE A 190 N SER A 191 1555 1555 1.34 LINK C TYR A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N TYR A 199 1555 1555 1.33 LINK C VAL A 201 N MSE A 202 1555 1555 1.33 LINK C MSE A 202 N LYS A 203 1555 1555 1.33 LINK C TYR A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N ILE A 217 1555 1555 1.32 LINK C ALA A 241 N MSE A 242 1555 1555 1.34 LINK C MSE A 242 N LEU A 243 1555 1555 1.33 LINK C SER B 36 N AMSE B 37 1555 1555 1.33 LINK C SER B 36 N BMSE B 37 1555 1555 1.33 LINK C AMSE B 37 N ASP B 38 1555 1555 1.33 LINK C BMSE B 37 N ASP B 38 1555 1555 1.33 LINK C LEU B 46 N MSE B 47 1555 1555 1.33 LINK C MSE B 47 N HIS B 48 1555 1555 1.32 LINK C LYS B 70 N MSE B 71 1555 1555 1.32 LINK C MSE B 71 N THR B 72 1555 1555 1.32 LINK C VAL B 73 N MSE B 74 1555 1555 1.34 LINK C MSE B 74 N GLU B 75 1555 1555 1.33 LINK C GLY B 177 N BMSE B 178 1555 1555 1.32 LINK C GLY B 177 N AMSE B 178 1555 1555 1.32 LINK C BMSE B 178 N TYR B 179 1555 1555 1.33 LINK C AMSE B 178 N TYR B 179 1555 1555 1.33 LINK C LEU B 189 N MSE B 190 1555 1555 1.32 LINK C MSE B 190 N SER B 191 1555 1555 1.33 LINK C TYR B 197 N MSE B 198 1555 1555 1.33 LINK C MSE B 198 N TYR B 199 1555 1555 1.34 LINK C VAL B 201 N MSE B 202 1555 1555 1.33 LINK C MSE B 202 N LYS B 203 1555 1555 1.34 LINK C TYR B 215 N MSE B 216 1555 1555 1.33 LINK C MSE B 216 N ILE B 217 1555 1555 1.31 LINK C ALA B 241 N MSE B 242 1555 1555 1.33 LINK C MSE B 242 N LEU B 243 1555 1555 1.33 LINK NE2 HIS A 98 FE FE A 703 1555 1555 2.05 LINK NE2 HIS A 123 FE FE A 703 1555 1555 2.13 LINK OD2 ASP A 124 FE FE A 703 1555 1555 2.26 LINK OD1 ASP A 124 FE FE A 704 1555 1555 2.05 LINK NE2 HIS A 194 FE FE A 704 1555 1555 2.32 LINK NE2 HIS A 220 FE FE A 704 1555 1555 2.27 LINK OD1 ASP A 253 FE FE A 703 1555 1555 2.09 LINK FE FE A 703 O HOH A 737 1555 1555 2.29 LINK FE FE A 703 O HOH A 812 1555 1555 2.21 LINK FE FE A 704 O1 I1N A 710 1555 1555 1.93 LINK FE FE A 704 O6 I1N A 710 1555 1555 2.31 LINK FE FE A 704 O HOH A 812 1555 1555 1.99 LINK NE2 HIS B 98 FE FE B 705 1555 1555 2.08 LINK NE2 HIS B 123 FE FE B 705 1555 1555 2.06 LINK OD2 ASP B 124 FE FE B 705 1555 1555 2.33 LINK OD1 ASP B 124 FE FE B 706 1555 1555 2.11 LINK NE2 HIS B 194 FE FE B 706 1555 1555 2.18 LINK NE2 HIS B 220 FE FE B 706 1555 1555 2.31 LINK OD1 ASP B 253 FE FE B 705 1555 1555 2.08 LINK FE FE B 705 O HOH B 782 1555 1555 2.20 LINK FE FE B 705 O HOH B 807 1555 1555 2.19 LINK FE FE B 706 O1 I1N B 709 1555 1555 2.02 LINK FE FE B 706 O6 I1N B 709 1555 1555 2.29 LINK FE FE B 706 O HOH B 807 1555 1555 2.25 SITE 1 AC1 6 HIS A 98 HIS A 123 ASP A 124 ASP A 253 SITE 2 AC1 6 HOH A 737 HOH A 812 SITE 1 AC2 5 ASP A 124 HIS A 194 HIS A 220 I1N A 710 SITE 2 AC2 5 HOH A 812 SITE 1 AC3 6 HIS B 98 HIS B 123 ASP B 124 ASP B 253 SITE 2 AC3 6 HOH B 782 HOH B 807 SITE 1 AC4 5 ASP B 124 HIS B 194 HIS B 220 I1N B 709 SITE 2 AC4 5 HOH B 807 SITE 1 AC5 4 ARG A 229 ARG A 247 HOH A 929 HOH A 962 SITE 1 AC6 5 ARG B 229 HOH B 845 HOH B 889 HOH B 945 SITE 2 AC6 5 HOH B 971 SITE 1 AC7 15 ASP A 85 SER A 87 ASP A 124 LYS A 127 SITE 2 AC7 15 VAL A 140 GLY A 141 ASP A 142 HIS A 194 SITE 3 AC7 15 HIS A 220 SER A 221 TYR A 223 FE A 704 SITE 4 AC7 15 HOH A 737 HOH A 755 HOH A 812 SITE 1 AC8 14 ASP B 85 SER B 87 ASP B 124 LYS B 127 SITE 2 AC8 14 VAL B 140 GLY B 141 ASP B 142 HIS B 194 SITE 3 AC8 14 HIS B 220 SER B 221 FE B 706 HOH B 782 SITE 4 AC8 14 HOH B 807 HOH B 972 SITE 1 AC9 9 ASP B 112 LYS B 113 TRP B 225 ARG B 229 SITE 2 AC9 9 GLN B 232 CYS B 235 SER B 236 HOH B 744 SITE 3 AC9 9 HOH B 929 SITE 1 BC1 9 ASP A 112 LYS A 113 TRP A 225 ARG A 229 SITE 2 BC1 9 GLN A 232 CYS A 235 SER A 236 HOH A 715 SITE 3 BC1 9 HOH A 927 CRYST1 119.715 55.861 111.516 90.00 116.72 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008353 0.000000 0.004205 0.00000 SCALE2 0.000000 0.017902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010039 0.00000